MD17G1013700.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0015441
Physical Location & Seq
Reverse (-)
1149831 .. 1151315
1485 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1013700.v1.1.491

Sequence Viewer

Length: 525 bp
ATGGGGCGTACGAACACAGTTTTGTTGGTGTTGGTTTTTGCAGCCTTGCTCACAAAGGAAACCTTGGCAGCACAACATGTTGTTGGGGGAAGCCAAGGCTGGGAGCAATCCACAGACTTGAACTCATGGGCGTCCGGCCAGAAATTCAAGGCCGGCGACCAACTTGTTTTTAAGTACTCCTCGGGGCTGCACAGTGTGGTGGAGCTACCAAACGAGAGTGCCTACAAGGGCTGCGACACCGGCAGTGCCCTGGACTCCAAGTCTAGCGGCAGTGATGTGGTGAAACTGACCAAGGCCGGCACACGATATTTTGCTTGCGGCACTTCAGGCCACTGCGACCAAGGCATGAAGATGAAGATCACTACTGTCGACGGAAACGCACCGTCATCACCATCGTCATCGTCTTCCGACGCTTCTCCTCCTGCTTCGACTTCTGCAACAGCTTCTTCTTCTTCCCTGCATTCTGCCCCTTCATTGTTTGTGATTGCTGCATTATCTGCCACCCTTCTGCTTTCCGTGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

175

Amino Acids

17.81

Weight (kDa)

6.89

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 116 7.8e-24 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27200
fragaria_vesca FvH4_6g53210
malus_domestica MD09G1013000.v1.1 MD17G1013700.v1.1
prunus_persica Prupe.3G304200_v2.0.a1
pyrus_communis pycom111g01080 pycom111g01100
rosa_chinensis RchiOBHm_Chr2g0175271
rosa_laevigata RLG00000022316
rosa_multiflora Rmu_co8149708.1_g000001
rosa_rugosa Rorug02G0582300
rosa_samantha Rh2AG662600 Rh2BG673800 Rh2CG637000 Rh2DG687800
rosa_wichuraiana Rw2G054350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 369
AciI CCGC 2 cut(s) 267, 318
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 309
AcyI GRCGYC 1 cut(s) 131
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 2 cut(s) 10, 176
AfiI CCNNNNNNNGG 1 cut(s) 100
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 2 cut(s) 121, 148
AhdI GACNNNNNGTC 1 cut(s) 259
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 2 cut(s) 205, 443
AluI AGCT 2 cut(s) 205, 443
Ama87I CYCGRG 1 cut(s) 181
AoxI GGCC 4 cut(s) 136, 150, 294, 328
ApeKI GCWGC 5 cut(s) 41, 68, 187, 231, 488
ApoI RAATTY 1 cut(s) 143
AsuHPI GGTGA 2 cut(s) 292, 381
AvaI CYCGRG 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 396
BbvI GCAGC 5 cut(s) 53, 80, 174, 218, 475
BccI CCATC 1 cut(s) 400
BciT130I CCWGG 1 cut(s) 251
BfaI CTAG 1 cut(s) 264
BisI GCNGC 7 cut(s) 42, 69, 188, 232, 268, 319, 489
BlsI GCNGC 7 cut(s) 43, 70, 189, 233, 269, 320, 490
BmcAI AGTACT 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 251
BmeRI GACNNNNNGTC 1 cut(s) 259
BmeT110I CYCGRG 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 251
BpiI GAAGAC 1 cut(s) 396
BsaBI GATNNNNATC 1 cut(s) 356
BsaHI GRCGYC 1 cut(s) 131
BsaJI CCNNGG 6 cut(s) 63, 94, 180, 249, 291, 340
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse118I RCCGGY 3 cut(s) 152, 239, 296
Bse8I GATNNNNATC 1 cut(s) 356
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 6 cut(s) 63, 94, 180, 249, 291, 340
BseJI GATNNNNATC 1 cut(s) 356
BseLI CCNNNNNNNGG 1 cut(s) 100
BseRI GAGGAG 2 cut(s) 169, 408
BseSI GKGCMC 1 cut(s) 250
BseXI GCAGC 5 cut(s) 53, 80, 174, 218, 475
BseYI CCCAGC 1 cut(s) 99
BsgI GTGCAG 1 cut(s) 173
BshFI GGCC 4 cut(s) 138, 152, 296, 330
BsiHKCI CYCGRG 1 cut(s) 181
BsiSI CCGG 4 cut(s) 135, 153, 240, 297
BsiWI CGTACG 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 100
BsmI GAATGC 1 cut(s) 460
BsnI GGCC 4 cut(s) 138, 152, 296, 330
BsoBI CYCGRG 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 1 cut(s) 357
BspACI CCGC 2 cut(s) 267, 318
BspANI GGCC 4 cut(s) 138, 152, 296, 330
BsrFI RCCGGY 3 cut(s) 152, 239, 296
BssAI RCCGGY 3 cut(s) 152, 239, 296
BssECI CCNNGG 6 cut(s) 63, 94, 180, 249, 291, 340
BssMI GATC 1 cut(s) 357
BssNI GRCGYC 1 cut(s) 131
BssT1I CCWWGG 4 cut(s) 63, 94, 291, 340
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 4 cut(s) 19, 194, 367, 384
BstACI GRCGYC 1 cut(s) 131
BstAPI GCANNNNNTGC 1 cut(s) 497
BstC8I GCNNGC 3 cut(s) 154, 298, 316
BstKTI GATC 1 cut(s) 360
BstMBI GATC 1 cut(s) 357
BstMWI GCNNNNNNNGC 4 cut(s) 240, 327, 342, 497
BstNI CCWGG 1 cut(s) 251
BstNSI RCATGY 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 249
BstSLI GKGCMC 1 cut(s) 250
BstV1I GCAGC 5 cut(s) 53, 80, 174, 218, 475
BstV2I GAAGAC 1 cut(s) 396
BsuRI GGCC 4 cut(s) 138, 152, 296, 330
BtsI GCAGTG 3 cut(s) 250, 277, 331
BtsIMutI CAGTG 4 cut(s) 199, 250, 277, 331
Cac8I GCNNGC 3 cut(s) 154, 298, 316
Cfr10I RCCGGY 3 cut(s) 152, 239, 296
CseI GACGC 2 cut(s) 120, 419
Csp6I GTAC 2 cut(s) 9, 175
CviAII CATG 3 cut(s) 77, 126, 346
CviQI GTAC 2 cut(s) 9, 175
DpnI GATC 1 cut(s) 359
DpnII GATC 1 cut(s) 357
DraIII CACNNNGTG 1 cut(s) 196
DriI GACNNNNNGTC 1 cut(s) 259
EaeI YGGCCR 1 cut(s) 136
Eam1105I GACNNNNNGTC 1 cut(s) 259
Eco130I CCWWGG 4 cut(s) 63, 94, 291, 340
Eco57I CTGAAG 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 4 cut(s) 63, 94, 291, 340
ErhI CCWWGG 4 cut(s) 63, 94, 291, 340
FaeI CATG 3 cut(s) 80, 129, 349
FaiI YATR 3 cut(s) 78, 127, 347
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FatI CATG 3 cut(s) 76, 125, 345
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 7 cut(s) 42, 69, 188, 232, 268, 319, 489
Fsp4HI GCNGC 7 cut(s) 42, 69, 188, 232, 268, 319, 489
FspBI CTAG 1 cut(s) 264
GluI GCNGC 7 cut(s) 42, 69, 188, 232, 268, 319, 489
GsaI CCCAGC 1 cut(s) 103
HaeIII GGCC 4 cut(s) 138, 152, 296, 330
HapII CCGG 4 cut(s) 135, 153, 240, 297
HgaI GACGC 2 cut(s) 120, 419
Hin1I GRCGYC 1 cut(s) 131
Hin1II CATG 3 cut(s) 80, 129, 349
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 1 cut(s) 254
HpaII CCGG 4 cut(s) 135, 153, 240, 297
HphI GGTGA 2 cut(s) 292, 381
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 1 cut(s) 409
Hpy8I GTNNAC 1 cut(s) 370
Hpy99I CGWCG 2 cut(s) 374, 413
HpyAV CCTTC 2 cut(s) 480, 515
HpyCH4III ACNGT 4 cut(s) 19, 194, 367, 384
HpyCH4V TGCA 5 cut(s) 41, 190, 437, 460, 491
HpyF10VI GCNNNNNNNGC 4 cut(s) 240, 327, 342, 497
Hsp92I GRCGYC 1 cut(s) 131
Hsp92II CATG 3 cut(s) 80, 129, 349
KroI GCCGGC 2 cut(s) 152, 296
KroNI GCCGGC 2 cut(s) 154, 298
Kzo9I GATC 1 cut(s) 357
LmnI GCTCC 2 cut(s) 103, 202
Lsp1109I GCAGC 5 cut(s) 53, 80, 174, 218, 475
MaeI CTAG 1 cut(s) 264
MalI GATC 1 cut(s) 359
MboI GATC 1 cut(s) 357
MboII GAAGA 6 cut(s) 361, 367, 396, 438, 441, 444
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 1 cut(s) 143
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 2 cut(s) 190, 429
MroNI GCCGGC 2 cut(s) 152, 296
MseI TTAA 2 cut(s) 171, 523
MslI CAYNNNNRTG 1 cut(s) 350
MspI CCGG 4 cut(s) 135, 153, 240, 297
MspR9I CCNGG 1 cut(s) 251
Mva1269I GAATGC 1 cut(s) 460
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 4 cut(s) 240, 327, 342, 497
NaeI GCCGGC 2 cut(s) 154, 298
NdeII GATC 1 cut(s) 357
NgoMIV GCCGGC 2 cut(s) 152, 296
NlaIII CATG 3 cut(s) 80, 129, 349
NspI RCATGY 1 cut(s) 80
PciI ACATGT 1 cut(s) 76
PctI GAATGC 1 cut(s) 460
PdiI GCCGGC 2 cut(s) 154, 298
Pfl23II CGTACG 1 cut(s) 8
PkrI GCNGC 7 cut(s) 43, 70, 189, 233, 269, 320, 490
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
PscI ACATGT 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 249
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 1 cut(s) 249
PspLI CGTACG 1 cut(s) 8
RsaI GTAC 2 cut(s) 10, 176
RsaNI GTAC 2 cut(s) 9, 175
RseI CAYNNNNRTG 1 cut(s) 350
SalI GTCGAC 1 cut(s) 368
SaqAI TTAA 2 cut(s) 171, 523
SatI GCNGC 7 cut(s) 42, 69, 188, 232, 268, 319, 489
Sau3AI GATC 1 cut(s) 357
ScaI AGTACT 1 cut(s) 176
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 251
SduI GDGCHC 1 cut(s) 250
SetI ASST 3 cut(s) 65, 207, 445
SmiMI CAYNNNNRTG 1 cut(s) 350
Sse9I AATT 1 cut(s) 143
SsiI CCGC 2 cut(s) 267, 318
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 249
StyI CCWWGG 4 cut(s) 63, 94, 291, 340
TaaI ACNGT 4 cut(s) 19, 194, 367, 384
TaqI TCGA 2 cut(s) 369, 428
TasI AATT 1 cut(s) 143
TatI WGTACW 1 cut(s) 174
TauI GCSGC 2 cut(s) 270, 321
Tru1I TTAA 2 cut(s) 171, 523
Tru9I TTAA 2 cut(s) 171, 523
TscAI CASTG 4 cut(s) 199, 250, 277, 338
TseI GCWGC 5 cut(s) 41, 68, 187, 231, 488
TspDTI ATGAA 3 cut(s) 362, 368, 462
TspGWI ACGGA 2 cut(s) 387, 505
TspRI CASTG 4 cut(s) 199, 250, 277, 338
XapI RAATTY 1 cut(s) 143
XceI RCATGY 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 369
XspI CTAG 1 cut(s) 264
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.