MD09G1013000.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0015441
Physical Location & Seq
Reverse (-)
814463 .. 815741
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1013000.v1.1.491

Sequence Viewer

Length: 552 bp
ATGGGGCGTACGAACACAGTTTTGTTGGTGTTGGTTTTTGCAGCTTTGTTCACAAAGGAAACCTTGGCGGCACAACATGTTGTTGGGGGAAGCCAAGGCTGGGAGGAATCCACAGACTTGAACTCATGGGCGTCCGGCGAGAAATTTAAGGTTGGGGATCAACTTGTTTTTAAGTACACCTCGGGGCTGCATAGTGTGGTGGAGCTACCAAACGAGAGCGCCTACAAGAGCTGCAACACCGGCAGTGCCCTAGACTCCAAGTCTAGCGGCAATGATGTGGTGAAACTGACCAAGGCCGGCACACGATATTTTGCTTGTGGCACTTTAGGCCACTGCGGCCAAGGCATGAAGATGAAGATCACTACTGTCGCCGGAAACACACCTTCTTCACCGTCGTCGCCGTCGTCGCCGTCGTCGCCGTCGTCGCCGTCGTCGCCGTCGTCGCCGTCGTCTTCTGCAGCAGCTTCTTCTTCTTCTTCTTCCCTGCGTTCTGTCACTTCATTGTTTGGGATTGCTGCATTATCTGTCCCCCTTCTGCTTTCCATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

184

Amino Acids

18.75

Weight (kDa)

8.83

Isoelectric Point (pI)

58.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 116 6e-24 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27200
fragaria_vesca FvH4_6g53210
malus_domestica MD09G1013000.v1.1 MD17G1013700.v1.1
prunus_persica Prupe.3G304200_v2.0.a1
pyrus_communis pycom111g01080 pycom111g01100
rosa_chinensis RchiOBHm_Chr2g0175271
rosa_laevigata RLG00000022316
rosa_multiflora Rmu_co8149708.1_g000001
rosa_rugosa Rorug02G0582300
rosa_samantha Rh2AG662600 Rh2BG673800 Rh2CG637000 Rh2DG687800
rosa_wichuraiana Rw2G054350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 68, 267, 336
AclWI GGATC 1 cut(s) 165
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 1 cut(s) 143
AcyI GRCGYC 1 cut(s) 131
AfaI GTAC 2 cut(s) 10, 176
AfiI CCNNNNNNNGG 1 cut(s) 100
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 1 cut(s) 121
AhdI GACNNNNNGTC 1 cut(s) 259
AluBI AGCT 4 cut(s) 44, 205, 231, 464
AluI AGCT 4 cut(s) 44, 205, 231, 464
AlwI GGATC 1 cut(s) 165
Ama87I CYCGRG 1 cut(s) 181
AoxI GGCC 3 cut(s) 294, 328, 337
ApeKI GCWGC 6 cut(s) 41, 187, 231, 458, 461, 515
ApoI RAATTY 1 cut(s) 143
AspLEI GCGC 1 cut(s) 221
AsuHPI GGTGA 2 cut(s) 292, 381
AvaI CYCGRG 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 444
BbvI GCAGC 6 cut(s) 53, 174, 218, 470, 473, 502
BceAI ACGGC 6 cut(s) 385, 394, 403, 412, 421, 430
BfaI CTAG 2 cut(s) 251, 264
BfmI CTRYAG 1 cut(s) 456
BfoI RGCGCY 1 cut(s) 222
BglI GCCNNNNNGGC 1 cut(s) 336
BisI GCNGC 9 cut(s) 42, 69, 188, 232, 268, 337, 459, 462, 516
BlsI GCNGC 9 cut(s) 43, 70, 189, 233, 269, 338, 460, 463, 517
BmeRI GACNNNNNGTC 1 cut(s) 259
BmeT110I CYCGRG 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 444
BsaBI GATNNNNATC 1 cut(s) 356
BsaHI GRCGYC 1 cut(s) 131
BsaJI CCNNGG 5 cut(s) 63, 94, 180, 291, 340
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse118I RCCGGY 2 cut(s) 239, 296
Bse3DI GCAATG 1 cut(s) 277
Bse8I GATNNNNATC 1 cut(s) 356
BseDI CCNNGG 5 cut(s) 63, 94, 180, 291, 340
BseJI GATNNNNATC 1 cut(s) 356
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 277
BseSI GKGCMC 1 cut(s) 250
BseXI GCAGC 6 cut(s) 53, 174, 218, 470, 473, 502
BseYI CCCAGC 1 cut(s) 99
BshFI GGCC 3 cut(s) 296, 330, 339
BsiHKCI CYCGRG 1 cut(s) 181
BsiSI CCGG 4 cut(s) 135, 240, 297, 372
BsiWI CGTACG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 512
BslI CCNNNNNNNGG 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 512
BsnI GGCC 3 cut(s) 296, 330, 339
BsoBI CYCGRG 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 2 cut(s) 157, 357
BspACI CCGC 3 cut(s) 68, 267, 336
BspANI GGCC 3 cut(s) 296, 330, 339
BspMAI CTGCAG 1 cut(s) 460
BspPI GGATC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 277
BsrFI RCCGGY 2 cut(s) 239, 296
BssAI RCCGGY 2 cut(s) 239, 296
BssECI CCNNGG 5 cut(s) 63, 94, 180, 291, 340
BssMI GATC 2 cut(s) 157, 357
BssNI GRCGYC 1 cut(s) 131
BssT1I CCWWGG 4 cut(s) 63, 94, 291, 340
Bst4CI ACNGT 3 cut(s) 19, 367, 393
BstACI GRCGYC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 298
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 2 cut(s) 160, 360
BstMBI GATC 2 cut(s) 157, 357
BstMWI GCNNNNNNNGC 9 cut(s) 240, 327, 336, 342, 406, 415, 424, 433, 442
BstNSI RCATGY 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 456
BstSLI GKGCMC 1 cut(s) 250
BstV1I GCAGC 6 cut(s) 53, 174, 218, 470, 473, 502
BstV2I GAAGAC 1 cut(s) 444
BsuRI GGCC 3 cut(s) 296, 330, 339
BtsI GCAGTG 2 cut(s) 250, 331
BtsIMutI CAGTG 2 cut(s) 250, 331
Cac8I GCNNGC 1 cut(s) 298
CfoI GCGC 1 cut(s) 221
Cfr10I RCCGGY 2 cut(s) 239, 296
CseI GACGC 1 cut(s) 120
Csp6I GTAC 2 cut(s) 9, 175
CviAII CATG 4 cut(s) 77, 126, 346, 544
CviQI GTAC 2 cut(s) 9, 175
DpnI GATC 2 cut(s) 159, 359
DpnII GATC 2 cut(s) 157, 357
DriI GACNNNNNGTC 1 cut(s) 259
EaeI YGGCCR 1 cut(s) 337
Eam1105I GACNNNNNGTC 1 cut(s) 259
Eco130I CCWWGG 4 cut(s) 63, 94, 291, 340
Eco88I CYCGRG 1 cut(s) 181
EcoT14I CCWWGG 4 cut(s) 63, 94, 291, 340
ErhI CCWWGG 4 cut(s) 63, 94, 291, 340
FaeI CATG 4 cut(s) 80, 129, 349, 547
FaiI YATR 5 cut(s) 78, 127, 192, 347, 545
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FaqI GGGAC 1 cut(s) 512
FatI CATG 4 cut(s) 76, 125, 345, 543
Fnu4HI GCNGC 9 cut(s) 42, 69, 188, 232, 268, 337, 459, 462, 516
Fsp4HI GCNGC 9 cut(s) 42, 69, 188, 232, 268, 337, 459, 462, 516
FspBI CTAG 2 cut(s) 251, 264
GlaI GCGC 1 cut(s) 220
GluI GCNGC 9 cut(s) 42, 69, 188, 232, 268, 337, 459, 462, 516
GsaI CCCAGC 1 cut(s) 103
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 3 cut(s) 296, 330, 339
HapII CCGG 4 cut(s) 135, 240, 297, 372
HgaI GACGC 1 cut(s) 120
HhaI GCGC 1 cut(s) 221
Hin1I GRCGYC 1 cut(s) 131
Hin1II CATG 4 cut(s) 80, 129, 349, 547
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HinfI GANTC 2 cut(s) 107, 254
HpaII CCGG 4 cut(s) 135, 240, 297, 372
HphI GGTGA 2 cut(s) 292, 381
Hpy166II GTNNAC 2 cut(s) 51, 177
Hpy8I GTNNAC 2 cut(s) 51, 177
HpyAV CCTTC 2 cut(s) 393, 542
HpyCH4III ACNGT 3 cut(s) 19, 367, 393
HpyCH4V TGCA 5 cut(s) 41, 190, 234, 458, 518
HpyF10VI GCNNNNNNNGC 9 cut(s) 240, 327, 336, 342, 406, 415, 424, 433, 442
Hsp92I GRCGYC 1 cut(s) 131
Hsp92II CATG 4 cut(s) 80, 129, 349, 547
HspAI GCGC 1 cut(s) 219
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
Kzo9I GATC 2 cut(s) 157, 357
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 6 cut(s) 85, 148, 253, 310, 385, 497
Lsp1109I GCAGC 6 cut(s) 53, 174, 218, 470, 473, 502
MaeI CTAG 2 cut(s) 251, 264
MaeIII GTNAC 1 cut(s) 493
MalI GATC 2 cut(s) 159, 359
MboI GATC 2 cut(s) 157, 357
MboII GAAGA 9 cut(s) 361, 367, 378, 444, 459, 462, 465, 468, 471
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 1 cut(s) 143
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 2 cut(s) 97, 190
MroNI GCCGGC 1 cut(s) 296
MseI TTAA 3 cut(s) 147, 171, 550
MslI CAYNNNNRTG 1 cut(s) 350
MspI CCGG 4 cut(s) 135, 240, 297, 372
MwoI GCNNNNNNNGC 9 cut(s) 240, 327, 336, 342, 406, 415, 424, 433, 442
NaeI GCCGGC 1 cut(s) 298
NdeII GATC 2 cut(s) 157, 357
NgoMIV GCCGGC 1 cut(s) 296
NlaIII CATG 4 cut(s) 80, 129, 349, 547
NmuCI GTSAC 1 cut(s) 493
NspI RCATGY 1 cut(s) 80
PciI ACATGT 1 cut(s) 76
PcsI WCGNNNNNNNCGW 6 cut(s) 401, 410, 419, 428, 437, 446
PdiI GCCGGC 1 cut(s) 298
PfeI GAWTC 1 cut(s) 107
Pfl23II CGTACG 1 cut(s) 8
PkrI GCNGC 9 cut(s) 43, 70, 189, 233, 269, 338, 460, 463, 517
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
PscI ACATGT 1 cut(s) 76
PspFI CCCAGC 1 cut(s) 99
PspLI CGTACG 1 cut(s) 8
PstI CTGCAG 1 cut(s) 460
RsaI GTAC 2 cut(s) 10, 176
RsaNI GTAC 2 cut(s) 9, 175
RseI CAYNNNNRTG 1 cut(s) 350
SaqAI TTAA 3 cut(s) 147, 171, 550
SatI GCNGC 9 cut(s) 42, 69, 188, 232, 268, 337, 459, 462, 516
Sau3AI GATC 2 cut(s) 157, 357
SchI GAGTC 1 cut(s) 248
SduI GDGCHC 1 cut(s) 250
SetI ASST 8 cut(s) 46, 65, 153, 182, 207, 233, 385, 466
SfcI CTRYAG 1 cut(s) 456
SfiI GGCCNNNNNGGCC 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 350
Sse9I AATT 1 cut(s) 143
SsiI CCGC 3 cut(s) 68, 267, 336
SspMI CTAG 2 cut(s) 251, 264
StyI CCWWGG 4 cut(s) 63, 94, 291, 340
TaaI ACNGT 3 cut(s) 19, 367, 393
TasI AATT 1 cut(s) 143
TatI WGTACW 1 cut(s) 174
TauI GCSGC 3 cut(s) 71, 270, 339
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 3 cut(s) 147, 171, 550
Tru9I TTAA 3 cut(s) 147, 171, 550
TscAI CASTG 2 cut(s) 250, 338
TseFI GTSAC 1 cut(s) 493
TseI GCWGC 6 cut(s) 41, 187, 231, 458, 461, 515
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 3 cut(s) 362, 368, 489
TspRI CASTG 2 cut(s) 250, 338
XapI RAATTY 1 cut(s) 143
XceI RCATGY 1 cut(s) 80
XspI CTAG 2 cut(s) 251, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.