Rmu_co8149708.1_g000001

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8149708.1
OG0015441
Physical Location & Seq
Forward (+)
1 .. 591
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8149708.1_g000001.1.cds

Sequence Viewer

Length: 494 bp
ttgcaaagaaaggcttggcagcacaacatgtagttgggggcagccaaggttgggaagaatccacagacttcaactcctgggcatctgctcagaaattcaaggttggagatcaacttgttttcaagtacacttcgggtttgcacagtgtcgttgaactacctaacgagagtgccttcaagaactgtgaccttgggagtgcactggactcgaagaagggaggaaacgatgtggtgaagttgaacaaggccggtacaagatattttgcttgtggtactttaggccactgtgaccaaggcatgaaggtgaagatcactactgcaggcagcactgcagcttcttctccggcatcatcatcctcgaacgatgatggttcttcttcagatgcttctaccactacttcaactacttctgcagcttctgccaacttcaattctttcgctttgttctttgcgatgactgcagtatgggcactcgttctggtttatgtgttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

163

Amino Acids

16.91

Weight (kDa)

7.03

Isoelectric Point (pI)

23.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27200
fragaria_vesca FvH4_6g53210
malus_domestica MD09G1013000.v1.1 MD17G1013700.v1.1
prunus_persica Prupe.3G304200_v2.0.a1
pyrus_communis pycom111g01080 pycom111g01100
rosa_chinensis RchiOBHm_Chr2g0175271
rosa_laevigata RLG00000022316
rosa_multiflora Rmu_co8149708.1_g000001
rosa_rugosa Rorug02G0582300
rosa_samantha Rh2AG662600 Rh2BG673800 Rh2CG637000 Rh2DG687800
rosa_wichuraiana Rw2G054350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 362
AfaI GTAC 3 cut(s) 127, 252, 273
AfiI CCNNNNNNNGG 1 cut(s) 51
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 8 cut(s) 72, 99, 123, 154, 177, 240, 401, 429
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 2 cut(s) 334, 415
AluI AGCT 2 cut(s) 334, 415
Alw21I GWGCWC 1 cut(s) 201
Alw44I GTGCAC 1 cut(s) 197
AlwNI CAGNNNCTG 1 cut(s) 418
AoxI GGCC 2 cut(s) 245, 279
ApaLI GTGCAC 1 cut(s) 197
ApeKI GCWGC 5 cut(s) 19, 41, 323, 331, 412
ApoI RAATTY 1 cut(s) 94
AsuHPI GGTGA 2 cut(s) 243, 315
BaeGI GKGCMC 2 cut(s) 201, 471
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 5 cut(s) 31, 53, 335, 343, 424
BccI CCATC 1 cut(s) 361
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 1 cut(s) 78
BfmI CTRYAG 4 cut(s) 317, 329, 410, 458
BisI GCNGC 5 cut(s) 20, 42, 324, 332, 413
BlsI GCNGC 5 cut(s) 21, 43, 325, 333, 414
Bme1390I CCNGG 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 3 cut(s) 91, 355, 372
BsaJI CCNNGG 4 cut(s) 45, 77, 189, 291
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse118I RCCGGY 1 cut(s) 247
Bse1I ACTGG 1 cut(s) 206
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 4 cut(s) 45, 77, 189, 291
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 103
BseNI ACTGG 1 cut(s) 206
BseSI GKGCMC 2 cut(s) 201, 471
BseXI GCAGC 5 cut(s) 31, 53, 335, 343, 424
BshFI GGCC 2 cut(s) 247, 281
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 2 cut(s) 248, 343
BslI CCNNNNNNNGG 1 cut(s) 51
BsnI GGCC 2 cut(s) 247, 281
Bsp1286I GDGCHC 2 cut(s) 201, 471
Bsp143I GATC 2 cut(s) 108, 308
BspANI GGCC 2 cut(s) 247, 281
BspCNI CTCAG 1 cut(s) 102
BspMAI CTGCAG 4 cut(s) 321, 333, 414, 462
BsrFI RCCGGY 1 cut(s) 247
BsrI ACTGG 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 247
BssECI CCNNGG 4 cut(s) 45, 77, 189, 291
BssMI GATC 2 cut(s) 108, 308
BssT1I CCWWGG 3 cut(s) 45, 189, 291
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 3 cut(s) 145, 184, 286
BstAPI GCANNNNNTGC 1 cut(s) 418
BstC8I GCNNGC 1 cut(s) 321
BstDEI CTNAG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 352
BstKTI GATC 2 cut(s) 111, 311
BstMBI GATC 2 cut(s) 108, 308
BstMWI GCNNNNNNNGC 3 cut(s) 418, 457, 466
BstNI CCWGG 1 cut(s) 78
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 76
BstSFI CTRYAG 4 cut(s) 317, 329, 410, 458
BstSLI GKGCMC 2 cut(s) 201, 471
BstV1I GCAGC 5 cut(s) 31, 53, 335, 343, 424
BsuRI GGCC 2 cut(s) 247, 281
BtgZI GCGATG 1 cut(s) 466
BtsCI GGATG 1 cut(s) 352
BtsI GCAGTG 1 cut(s) 326
BtsIMutI CAGTG 4 cut(s) 150, 199, 282, 326
Cac8I GCNNGC 1 cut(s) 321
CaiI CAGNNNCTG 1 cut(s) 418
Cfr10I RCCGGY 1 cut(s) 247
Csp6I GTAC 3 cut(s) 126, 251, 272
CviAII CATG 2 cut(s) 28, 297
CviJI RGCY 6 cut(s) 14, 44, 247, 281, 334, 415
CviKI_1 RGCY 6 cut(s) 14, 44, 247, 281, 334, 415
CviQI GTAC 3 cut(s) 126, 251, 272
DdeI CTNAG 1 cut(s) 89
DpnI GATC 2 cut(s) 110, 310
DpnII GATC 2 cut(s) 108, 308
Eco130I CCWWGG 3 cut(s) 45, 189, 291
Eco57I CTGAAG 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 3 cut(s) 45, 189, 291
ErhI CCWWGG 3 cut(s) 45, 189, 291
FaeI CATG 2 cut(s) 31, 300
FaiI YATR 4 cut(s) 29, 298, 465, 485
FalI AAGNNNNNCTT 1 cut(s) 30
FatI CATG 2 cut(s) 27, 296
Fnu4HI GCNGC 5 cut(s) 20, 42, 324, 332, 413
FokI GGATG 1 cut(s) 339
Fsp4HI GCNGC 5 cut(s) 20, 42, 324, 332, 413
GluI GCNGC 5 cut(s) 20, 42, 324, 332, 413
HaeIII GGCC 2 cut(s) 247, 281
HapII CCGG 2 cut(s) 248, 343
Hin1II CATG 2 cut(s) 31, 300
HinfI GANTC 2 cut(s) 58, 205
HpaII CCGG 2 cut(s) 248, 343
HphI GGTGA 2 cut(s) 243, 315
Hpy166II GTNNAC 2 cut(s) 128, 199
Hpy188I TCNGA 2 cut(s) 92, 381
Hpy188III TCNNGA 1 cut(s) 177
Hpy8I GTNNAC 2 cut(s) 128, 199
HpyAV CCTTC 3 cut(s) 183, 207, 294
HpyCH4III ACNGT 3 cut(s) 145, 184, 286
HpyCH4V TGCA 7 cut(s) 4, 141, 199, 319, 331, 412, 460
HpyF10VI GCNNNNNNNGC 3 cut(s) 418, 457, 466
HpyF3I CTNAG 1 cut(s) 89
Hsp92II CATG 2 cut(s) 31, 300
Kzo9I GATC 2 cut(s) 108, 308
LpnPI CCDG 7 cut(s) 63, 90, 187, 261, 305, 356, 463
Lsp1109I GCAGC 5 cut(s) 31, 53, 335, 343, 424
LweI GCATC 3 cut(s) 91, 355, 372
MaeIII GTNAC 2 cut(s) 184, 286
MalI GATC 2 cut(s) 110, 310
MboI GATC 2 cut(s) 108, 308
MboII GAAGA 6 cut(s) 67, 222, 318, 329, 365, 368
MhlI GDGCHC 2 cut(s) 201, 471
MluCI AATT 2 cut(s) 94, 429
MlyI GAGTC 1 cut(s) 199
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 2 cut(s) 211, 366
MslI CAYNNNNRTG 1 cut(s) 301
MspI CCGG 2 cut(s) 248, 343
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 3 cut(s) 418, 457, 466
NdeII GATC 2 cut(s) 108, 308
NlaIII CATG 2 cut(s) 31, 300
NmuCI GTSAC 2 cut(s) 184, 286
NspI RCATGY 1 cut(s) 31
PciI ACATGT 1 cut(s) 27
PfeI GAWTC 1 cut(s) 58
PkrI GCNGC 5 cut(s) 21, 43, 325, 333, 414
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PscI ACATGT 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PstI CTGCAG 4 cut(s) 321, 333, 414, 462
PstNI CAGNNNCTG 1 cut(s) 418
RsaI GTAC 3 cut(s) 127, 252, 273
RsaNI GTAC 3 cut(s) 126, 251, 272
RseI CAYNNNNRTG 1 cut(s) 301
SatI GCNGC 5 cut(s) 20, 42, 324, 332, 413
Sau3AI GATC 2 cut(s) 108, 308
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 2 cut(s) 201, 471
SetI ASST 7 cut(s) 51, 104, 162, 191, 305, 336, 417
SfaNI GCATC 3 cut(s) 91, 355, 372
SfcI CTRYAG 4 cut(s) 317, 329, 410, 458
SmiMI CAYNNNNRTG 1 cut(s) 301
Sse9I AATT 2 cut(s) 94, 429
StyD4I CCNGG 1 cut(s) 76
StyI CCWWGG 3 cut(s) 45, 189, 291
TaaI ACNGT 3 cut(s) 145, 184, 286
TaqI TCGA 2 cut(s) 208, 358
TasI AATT 2 cut(s) 94, 429
TatI WGTACW 1 cut(s) 125
TfiI GAWTC 1 cut(s) 58
TscAI CASTG 4 cut(s) 150, 206, 289, 333
TseFI GTSAC 2 cut(s) 184, 286
TseI GCWGC 5 cut(s) 19, 41, 323, 331, 412
Tsp45I GTSAC 2 cut(s) 184, 286
TspDTI ATGAA 1 cut(s) 313
TspRI CASTG 4 cut(s) 150, 206, 289, 333
VneI GTGCAC 1 cut(s) 197
XapI RAATTY 1 cut(s) 94
XceI RCATGY 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.