FvH4_6g53210

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015441
Physical Location & Seq
Forward (+)
39050841 .. 39051996
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53210.t1

Sequence Viewer

Length: 555 bp
ATGGGGCTCAAGAACACAATTTTGTTGTCCTTGTTTTTTGTAGCTTTGGTTGCAAAGAAAGGCTTGGCAGCGCAGCATGTAGTTGGGGGCAGCCAAGGTTGGGAACAATCCACAGACCTCAACTCATGGGCATCCTCTCAGAAATTCAAGGTTGGCGATCAACTTGTTTTCAAGTACTCTTCGATGCATAGCGTCGTCGAGCTACCTAACGAGAGCGCCTTCAAGAACTGTGACCTTGGCAGTGCACTAGACACTAAGAAGGGAGGAAACGACGTCGTGAAGTTGAACAAGGCCGGCACAAGATATTTTGCTTGTGGTACTTTAGGCCACTGTGATGGAGGCATGAAGGTGAAGATCACTACTGTTGCTGCAGGAAGCAATACAGCTTCTTCTCCGGCATCATCTTCATCCTCGGACGATGATGATTCTTCTTCGGATGCTTCCACCACTACTTCAACTACTACTATTTCTGCAGCTTCTGCCAACTTCAATTCTTTCAATTCATTCGTTGCGATGACTGCAGTATCGGCACTCGTTCTGGTTTATGTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

185

Amino Acids

19.09

Weight (kDa)

6.81

Isoelectric Point (pI)

31.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 115 3.5e-22 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27200
fragaria_vesca FvH4_6g53210
malus_domestica MD09G1013000.v1.1 MD17G1013700.v1.1
prunus_persica Prupe.3G304200_v2.0.a1
pyrus_communis pycom111g01080 pycom111g01100
rosa_chinensis RchiOBHm_Chr2g0175271
rosa_laevigata RLG00000022316
rosa_multiflora Rmu_co8149708.1_g000001
rosa_rugosa Rorug02G0582300
rosa_samantha Rh2AG662600 Rh2BG673800 Rh2CG637000 Rh2DG687800
rosa_wichuraiana Rw2G054350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 276
AcsI RAATTY 1 cut(s) 143
AcyI GRCGYC 1 cut(s) 273
AfaI GTAC 2 cut(s) 176, 319
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 7 cut(s) 148, 172, 223, 286, 456, 490, 499
AluBI AGCT 4 cut(s) 44, 202, 386, 476
AluI AGCT 4 cut(s) 44, 202, 386, 476
Alw21I GWGCWC 1 cut(s) 247
Alw44I GTGCAC 1 cut(s) 243
AlwNI CAGNNNCTG 1 cut(s) 479
AoxI GGCC 2 cut(s) 291, 325
ApaLI GTGCAC 1 cut(s) 243
ApeKI GCWGC 5 cut(s) 68, 73, 90, 368, 473
ApoI RAATTY 1 cut(s) 143
AspLEI GCGC 2 cut(s) 73, 218
AsuHPI GGTGA 1 cut(s) 361
BaeGI GKGCMC 1 cut(s) 247
BaeI ACNNNNGTAYC 2 cut(s) 507, 540
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 247
BbvI GCAGC 5 cut(s) 80, 85, 102, 355, 485
BccI CCATC 1 cut(s) 329
BfaI CTAG 1 cut(s) 248
BfmI CTRYAG 3 cut(s) 369, 471, 519
BfoI RGCGCY 1 cut(s) 219
BisI GCNGC 5 cut(s) 69, 74, 91, 369, 474
BlsI GCNGC 5 cut(s) 70, 75, 92, 370, 475
BmcAI AGTACT 1 cut(s) 176
BmsI GCATC 4 cut(s) 140, 174, 407, 427
BsaHI GRCGYC 1 cut(s) 273
BsaJI CCNNGG 3 cut(s) 94, 235, 411
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse118I RCCGGY 1 cut(s) 293
BseDI CCNNGG 3 cut(s) 94, 235, 411
BseGI GGATG 3 cut(s) 131, 407, 442
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 152
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 5 cut(s) 80, 85, 102, 355, 485
BshFI GGCC 2 cut(s) 293, 327
BsiHKAI GWGCWC 1 cut(s) 247
BsiSI CCGG 2 cut(s) 294, 395
BslI CCNNNNNNNGG 1 cut(s) 100
BsnI GGCC 2 cut(s) 293, 327
Bsp1286I GDGCHC 2 cut(s) 9, 247
Bsp143I GATC 2 cut(s) 157, 354
BspANI GGCC 2 cut(s) 293, 327
BspCNI CTCAG 1 cut(s) 151
BspMAI CTGCAG 3 cut(s) 373, 475, 523
BsrFI RCCGGY 1 cut(s) 293
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 3 cut(s) 94, 235, 411
BssMI GATC 2 cut(s) 157, 354
BssNI GRCGYC 1 cut(s) 273
BssT1I CCWWGG 2 cut(s) 94, 235
Bst4CI ACNGT 3 cut(s) 230, 332, 364
Bst6I CTCTTC 1 cut(s) 184
BstACI GRCGYC 1 cut(s) 273
BstAPI GCANNNNNTGC 1 cut(s) 479
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 2 cut(s) 138, 255
BstF5I GGATG 3 cut(s) 131, 407, 442
BstH2I RGCGCY 1 cut(s) 219
BstHHI GCGC 2 cut(s) 73, 218
BstKTI GATC 2 cut(s) 160, 357
BstMBI GATC 2 cut(s) 157, 354
BstMWI GCNNNNNNNGC 4 cut(s) 50, 479, 518, 527
BstNSI RCATGY 1 cut(s) 80
BstSFI CTRYAG 3 cut(s) 369, 471, 519
BstSLI GKGCMC 1 cut(s) 247
BstV1I GCAGC 5 cut(s) 80, 85, 102, 355, 485
BstXI CCANNNNNNTGG 1 cut(s) 335
BsuRI GGCC 2 cut(s) 293, 327
BtgZI GCGATG 1 cut(s) 527
BtsCI GGATG 3 cut(s) 131, 407, 442
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 2 cut(s) 247, 328
Cac8I GCNNGC 1 cut(s) 295
CaiI CAGNNNCTG 1 cut(s) 479
CfoI GCGC 2 cut(s) 73, 218
Cfr10I RCCGGY 1 cut(s) 293
CseI GACGC 1 cut(s) 181
Csp6I GTAC 2 cut(s) 175, 318
CviAII CATG 3 cut(s) 77, 126, 343
CviJI RGCY 9 cut(s) 7, 44, 63, 93, 202, 293, 327, 386, 476
CviKI_1 RGCY 9 cut(s) 7, 44, 63, 93, 202, 293, 327, 386, 476
CviQI GTAC 2 cut(s) 175, 318
DdeI CTNAG 2 cut(s) 138, 255
DpnI GATC 2 cut(s) 159, 356
DpnII GATC 2 cut(s) 157, 354
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
Eco130I CCWWGG 2 cut(s) 94, 235
Eco24I GRGCYC 1 cut(s) 9
EcoT14I CCWWGG 2 cut(s) 94, 235
EcoT22I ATGCAT 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 2 cut(s) 94, 235
FaeI CATG 3 cut(s) 80, 129, 346
FaiI YATR 5 cut(s) 78, 127, 189, 344, 546
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FatI CATG 3 cut(s) 76, 125, 342
Fnu4HI GCNGC 5 cut(s) 69, 74, 91, 369, 474
FokI GGATG 3 cut(s) 118, 394, 449
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 5 cut(s) 69, 74, 91, 369, 474
FspBI CTAG 1 cut(s) 248
GlaI GCGC 2 cut(s) 72, 217
GluI GCNGC 5 cut(s) 69, 74, 91, 369, 474
HaeII RGCGCY 1 cut(s) 219
HaeIII GGCC 2 cut(s) 293, 327
HapII CCGG 2 cut(s) 294, 395
HgaI GACGC 1 cut(s) 181
HhaI GCGC 2 cut(s) 73, 218
Hin1I GRCGYC 1 cut(s) 273
Hin1II CATG 3 cut(s) 80, 129, 346
Hin6I GCGC 2 cut(s) 71, 216
HinP1I GCGC 2 cut(s) 71, 216
HinfI GANTC 1 cut(s) 425
HpaII CCGG 2 cut(s) 294, 395
HphI GGTGA 1 cut(s) 361
Hpy166II GTNNAC 1 cut(s) 245
Hpy188I TCNGA 3 cut(s) 141, 415, 436
Hpy188III TCNNGA 3 cut(s) 10, 223, 277
Hpy8I GTNNAC 1 cut(s) 245
Hpy99I CGWCG 4 cut(s) 197, 200, 275, 278
HpyAV CCTTC 3 cut(s) 229, 253, 340
HpyCH4III ACNGT 3 cut(s) 230, 332, 364
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 6 cut(s) 53, 187, 245, 371, 473, 521
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 479, 518, 527
HpyF3I CTNAG 2 cut(s) 138, 255
HpySE526I ACGT 1 cut(s) 273
Hsp92I GRCGYC 1 cut(s) 273
Hsp92II CATG 3 cut(s) 80, 129, 346
HspAI GCGC 2 cut(s) 71, 216
KroI GCCGGC 1 cut(s) 293
KroNI GCCGGC 1 cut(s) 295
Kzo9I GATC 2 cut(s) 157, 354
LpnPI CCDG 4 cut(s) 307, 357, 408, 524
Lsp1109I GCAGC 5 cut(s) 80, 85, 102, 355, 485
LweI GCATC 4 cut(s) 140, 174, 407, 427
MaeI CTAG 1 cut(s) 248
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 1 cut(s) 230
MalI GATC 2 cut(s) 159, 356
MboI GATC 2 cut(s) 157, 354
MboII GAAGA 6 cut(s) 171, 364, 381, 396, 420, 423
MhlI GDGCHC 2 cut(s) 9, 247
MluCI AATT 4 cut(s) 18, 143, 490, 499
MnlI CCTC 5 cut(s) 128, 145, 257, 332, 421
Mph1103I ATGCAT 1 cut(s) 189
MroNI GCCGGC 1 cut(s) 293
MslI CAYNNNNRTG 2 cut(s) 333, 347
MspI CCGG 2 cut(s) 294, 395
MwoI GCNNNNNNNGC 4 cut(s) 50, 479, 518, 527
NaeI GCCGGC 1 cut(s) 295
NdeII GATC 2 cut(s) 157, 354
NgoMIV GCCGGC 1 cut(s) 293
NlaIII CATG 3 cut(s) 80, 129, 346
NmuCI GTSAC 1 cut(s) 230
NsiI ATGCAT 1 cut(s) 189
NspI RCATGY 1 cut(s) 80
PdiI GCCGGC 1 cut(s) 295
PfeI GAWTC 1 cut(s) 425
PkrI GCNGC 5 cut(s) 70, 75, 92, 370, 475
PstI CTGCAG 3 cut(s) 373, 475, 523
PstNI CAGNNNCTG 1 cut(s) 479
RsaI GTAC 2 cut(s) 176, 319
RsaNI GTAC 2 cut(s) 175, 318
RseI CAYNNNNRTG 2 cut(s) 333, 347
SatI GCNGC 5 cut(s) 69, 74, 91, 369, 474
Sau3AI GATC 2 cut(s) 157, 354
ScaI AGTACT 1 cut(s) 176
SduI GDGCHC 2 cut(s) 9, 247
SfaNI GCATC 4 cut(s) 140, 174, 407, 427
SfcI CTRYAG 3 cut(s) 369, 471, 519
SmiMI CAYNNNNRTG 2 cut(s) 333, 347
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 4 cut(s) 18, 143, 490, 499
SspMI CTAG 1 cut(s) 248
StyI CCWWGG 2 cut(s) 94, 235
TaaI ACNGT 3 cut(s) 230, 332, 364
TaiI ACGT 1 cut(s) 276
TaqI TCGA 2 cut(s) 182, 198
TasI AATT 4 cut(s) 18, 143, 490, 499
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 1 cut(s) 425
TscAI CASTG 2 cut(s) 247, 335
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 5 cut(s) 68, 73, 90, 368, 473
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 3 cut(s) 359, 396, 492
TspRI CASTG 2 cut(s) 247, 335
VneI GTGCAC 1 cut(s) 243
XapI RAATTY 1 cut(s) 143
XceI RCATGY 1 cut(s) 80
XspI CTAG 1 cut(s) 248
ZraI GACGTC 1 cut(s) 274
ZrmI AGTACT 1 cut(s) 176
Zsp2I ATGCAT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.