Rh2DG687800

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015441
Physical Location & Seq
Forward (+)
90537210 .. 90540758
3549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG687800.1

Sequence Viewer

Length: 915 bp
ATGGGGCTCAAGAACACAATTTTGTTATCTTTGTTTTTTGTAGCTTTGGTTGCAAAGAAAGGCTTGGCAGCACAACATGTAGTTGGGGGCAGCCAAGGTTGGGAAGAATCCACAGACTTCAACTCCTGGGCATCTGCTCAGAAATTCAAGGTTGGAGATCAACTTGTTTTCAAGTACACTTCGGGTTTGCACAGTGTCGTTGAACTACCTAACGAGAGTGCCTTCAAGAACTGTGACCTTGGGAGTGCACTGGACTCGAAGAAGGGAGGAAACGATGTGGTGAAGTTGAACAAGGCCGGTACAAGATATTTTGCTTGTGGTACTTTAGGCCACTGTGACCAAGGCATGAAGGTGAAGATCACTACTGCAGGCAGCACTGCAGCTTCTTCTCCGGCATCATCATCCTCGAACGATGATGGTTCTTCTTCAGATGCTTCTACCACTACTTCAACTACTTCTGCAGCTTCTGCCAACTTCAATTCTTTCGCTTTGTTCTTTGCGATGACTGCAGTGGTTGACGCGGCCGTCTTCCCCGACCACCCTATTGTTGTTGGCATATGGGACACCACTTTTCGCAGCAGGAGTAGTGATGAAGATGAAGTATGTAGACCTAATTTCGTTCCGGCGGCGGAATTGTCCATCCAGGGTTTGCAGCAAGTGACACTTGATAGCTCGGAATTTAGGGAATTTGAAGCAACAAAATCATCATGTGCAATTTGTTTGGAGGATTTTGCAGAACAAGGTATTGATCAACTGGTGGTGGTTACTAGCTTGCCCTGCTCACACTATTATCATGGAGATTGCATTGTCAAGTGGCTGGAGATTTGTCATCCATGTCCCATATGCCGATACCCAATGCCAATAGAGCAAGTGGGCGACCCATCATCAAATCCCTTACCCCAATCAAGGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

304

Amino Acids

32.52

Weight (kDa)

5.03

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 116 2.3e-22 Plastocyanin-like domain
zf-RING_2 PF13639 236 - 283 7.1e-11 Ring finger domain
zf-RING_11 PF17123 237 - 269 1.3e-07 RING-like zinc finger
zf-C3HC4 PF00097 237 - 282 8.2e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27200
fragaria_vesca FvH4_6g53210
malus_domestica MD09G1013000.v1.1 MD17G1013700.v1.1
prunus_persica Prupe.3G304200_v2.0.a1
pyrus_communis pycom111g01080 pycom111g01100
rosa_chinensis RchiOBHm_Chr2g0175271
rosa_laevigata RLG00000022316
rosa_multiflora Rmu_co8149708.1_g000001
rosa_rugosa Rorug02G0582300
rosa_samantha Rh2AG662600 Rh2BG673800 Rh2CG637000 Rh2DG687800
rosa_wichuraiana Rw2G054350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 524
AccI GTMKAC 1 cut(s) 607
AccII CGCG 1 cut(s) 521
AciI CCGC 3 cut(s) 521, 626, 629
AcoI YGGCCR 1 cut(s) 522
AcsI RAATTY 3 cut(s) 143, 677, 686
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 3 cut(s) 176, 301, 322
AfiI CCNNNNNNNGG 2 cut(s) 100, 906
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 9 cut(s) 121, 148, 172, 203, 226, 289, 450, 478, 692
AjnI CCWGG 2 cut(s) 125, 642
AluBI AGCT 5 cut(s) 44, 383, 464, 672, 771
AluI AGCT 5 cut(s) 44, 383, 464, 672, 771
Alw21I GWGCWC 1 cut(s) 250
Alw44I GTGCAC 1 cut(s) 246
AlwNI CAGNNNCTG 1 cut(s) 467
AoxI GGCC 3 cut(s) 294, 328, 522
ApaLI GTGCAC 1 cut(s) 246
ApeKI GCWGC 7 cut(s) 68, 90, 372, 380, 461, 576, 652
ApoI RAATTY 3 cut(s) 143, 677, 686
AsuHPI GGTGA 2 cut(s) 292, 364
BaeGI GKGCMC 1 cut(s) 250
BanII GRGCYC 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 520
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 7 cut(s) 80, 102, 384, 392, 473, 588, 664
BccI CCATC 3 cut(s) 410, 647, 889
BceAI ACGGC 1 cut(s) 509
BcgI CGANNNNNNTGC 2 cut(s) 237, 271
BciT130I CCWGG 2 cut(s) 127, 644
BclI TGATCA 1 cut(s) 748
BfaI CTAG 1 cut(s) 768
BfmI CTRYAG 4 cut(s) 366, 378, 459, 507
BisI GCNGC 9 cut(s) 69, 91, 373, 381, 462, 522, 577, 627, 653
BlsI GCNGC 9 cut(s) 70, 92, 374, 382, 463, 523, 578, 628, 654
Bme1390I CCNGG 2 cut(s) 127, 644
BmrFI CCNGG 2 cut(s) 127, 644
BmsI GCATC 3 cut(s) 140, 404, 421
BpiI GAAGAC 1 cut(s) 520
BpmI CTGGAG 1 cut(s) 839
BsaJI CCNNGG 5 cut(s) 94, 126, 238, 340, 643
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 906
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 2 cut(s) 255, 759
BseBI CCWGG 2 cut(s) 127, 644
BseDI CCNNGG 5 cut(s) 94, 126, 238, 340, 643
BseGI GGATG 3 cut(s) 401, 639, 829
BseLI CCNNNNNNNGG 2 cut(s) 100, 906
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 2 cut(s) 255, 759
BseSI GKGCMC 1 cut(s) 250
BseX3I CGGCCG 1 cut(s) 522
BseXI GCAGC 7 cut(s) 80, 102, 384, 392, 473, 588, 664
Bsh1236I CGCG 1 cut(s) 521
Bsh1285I CGRYCG 1 cut(s) 525
BshFI GGCC 3 cut(s) 296, 330, 524
BsiEI CGRYCG 1 cut(s) 525
BsiHKAI GWGCWC 1 cut(s) 250
BsiSI CCGG 3 cut(s) 297, 392, 623
BslFI GGGAC 2 cut(s) 575, 822
BslI CCNNNNNNNGG 2 cut(s) 100, 906
BsmFI GGGAC 2 cut(s) 575, 822
BsnI GGCC 3 cut(s) 296, 330, 524
Bsp1286I GDGCHC 2 cut(s) 9, 250
Bsp143I GATC 3 cut(s) 157, 357, 748
BspACI CCGC 3 cut(s) 521, 626, 629
BspANI GGCC 3 cut(s) 296, 330, 524
BspCNI CTCAG 1 cut(s) 151
BspFNI CGCG 1 cut(s) 521
BspMAI CTGCAG 4 cut(s) 370, 382, 463, 511
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 2 cut(s) 255, 759
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 5 cut(s) 94, 126, 238, 340, 643
BssMI GATC 3 cut(s) 157, 357, 748
BssT1I CCWWGG 3 cut(s) 94, 238, 340
Bst2UI CCWGG 2 cut(s) 127, 644
Bst4CI ACNGT 3 cut(s) 194, 233, 335
BstAPI GCANNNNNTGC 1 cut(s) 467
BstC8I GCNNGC 2 cut(s) 370, 773
BstDEI CTNAG 1 cut(s) 138
BstF5I GGATG 3 cut(s) 401, 639, 829
BstFNI CGCG 1 cut(s) 521
BstKTI GATC 3 cut(s) 160, 360, 751
BstMBI GATC 3 cut(s) 157, 357, 748
BstMCI CGRYCG 1 cut(s) 525
BstMWI GCNNNNNNNGC 5 cut(s) 50, 467, 506, 777, 865
BstNI CCWGG 2 cut(s) 127, 644
BstNSI RCATGY 1 cut(s) 80
BstSCI CCNGG 2 cut(s) 125, 642
BstSFI CTRYAG 4 cut(s) 366, 378, 459, 507
BstSLI GKGCMC 1 cut(s) 250
BstUI CGCG 1 cut(s) 521
BstV1I GCAGC 7 cut(s) 80, 102, 384, 392, 473, 588, 664
BstV2I GAAGAC 1 cut(s) 520
BstZI CGGCCG 1 cut(s) 522
BsuRI GGCC 3 cut(s) 296, 330, 524
BtgZI GCGATG 1 cut(s) 515
BtsCI GGATG 3 cut(s) 401, 639, 829
BtsI GCAGTG 2 cut(s) 375, 516
BtsIMutI CAGTG 5 cut(s) 199, 248, 331, 375, 516
Cac8I GCNNGC 2 cut(s) 370, 773
CaiI CAGNNNCTG 1 cut(s) 467
Cfr10I RCCGGY 1 cut(s) 296
CseI GACGC 1 cut(s) 527
Csp6I GTAC 3 cut(s) 175, 300, 321
CviAII CATG 5 cut(s) 77, 346, 708, 794, 834
CviQI GTAC 3 cut(s) 175, 300, 321
DdeI CTNAG 1 cut(s) 138
DpnI GATC 3 cut(s) 159, 359, 750
DpnII GATC 3 cut(s) 157, 357, 748
DrdI GACNNNNNNGTC 1 cut(s) 524
DseDI GACNNNNNNGTC 1 cut(s) 524
EaeI YGGCCR 1 cut(s) 522
EagI CGGCCG 1 cut(s) 522
EciI GGCGGA 1 cut(s) 644
EclXI CGGCCG 1 cut(s) 522
Eco130I CCWWGG 3 cut(s) 94, 238, 340
Eco24I GRGCYC 1 cut(s) 9
Eco52I CGGCCG 1 cut(s) 522
Eco57I CTGAAG 1 cut(s) 411
EcoRII CCWGG 2 cut(s) 125, 642
EcoT14I CCWWGG 3 cut(s) 94, 238, 340
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 3 cut(s) 94, 238, 340
FaeI CATG 5 cut(s) 80, 349, 711, 797, 837
FalI AAGNNNNNCTT 4 cut(s) 47, 79, 648, 680
FaqI GGGAC 2 cut(s) 575, 822
FatI CATG 5 cut(s) 76, 345, 707, 793, 833
FauNDI CATATG 2 cut(s) 557, 842
FbaI TGATCA 1 cut(s) 748
FblI GTMKAC 1 cut(s) 607
Fnu4HI GCNGC 9 cut(s) 69, 91, 373, 381, 462, 522, 577, 627, 653
FokI GGATG 3 cut(s) 388, 626, 816
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 9 cut(s) 69, 91, 373, 381, 462, 522, 577, 627, 653
FspBI CTAG 1 cut(s) 768
GluI GCNGC 9 cut(s) 69, 91, 373, 381, 462, 522, 577, 627, 653
GsuI CTGGAG 1 cut(s) 839
HaeIII GGCC 3 cut(s) 296, 330, 524
HapII CCGG 3 cut(s) 297, 392, 623
HgaI GACGC 1 cut(s) 527
Hin1II CATG 5 cut(s) 80, 349, 711, 797, 837
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HinfI GANTC 2 cut(s) 107, 254
HpaII CCGG 3 cut(s) 297, 392, 623
HphI GGTGA 2 cut(s) 292, 364
Hpy166II GTNNAC 4 cut(s) 177, 248, 517, 608
Hpy188I TCNGA 3 cut(s) 141, 430, 676
Hpy188III TCNNGA 2 cut(s) 10, 226
Hpy8I GTNNAC 4 cut(s) 177, 248, 517, 608
HpyAV CCTTC 3 cut(s) 232, 256, 343
HpyCH4III ACNGT 3 cut(s) 194, 233, 335
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 467, 506, 777, 865
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 5 cut(s) 80, 349, 711, 797, 837
Ksp22I TGATCA 1 cut(s) 748
Kzo9I GATC 3 cut(s) 157, 357, 748
Lsp1109I GCAGC 7 cut(s) 80, 102, 384, 392, 473, 588, 664
LweI GCATC 3 cut(s) 140, 404, 421
MaeI CTAG 1 cut(s) 768
MaeIII GTNAC 4 cut(s) 233, 335, 658, 763
MalI GATC 3 cut(s) 159, 359, 750
MboI GATC 3 cut(s) 157, 357, 748
MboII GAAGA 8 cut(s) 116, 271, 367, 378, 414, 417, 520, 605
MhlI GDGCHC 2 cut(s) 9, 250
MluCI AATT 8 cut(s) 18, 143, 478, 613, 632, 677, 686, 714
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 3 cut(s) 260, 415, 718
MslI CAYNNNNRTG 1 cut(s) 350
MspI CCGG 3 cut(s) 297, 392, 623
MspR9I CCNGG 2 cut(s) 127, 644
MvaI CCWGG 2 cut(s) 127, 644
MvnI CGCG 1 cut(s) 521
MwoI GCNNNNNNNGC 5 cut(s) 50, 467, 506, 777, 865
NdeI CATATG 2 cut(s) 557, 842
NdeII GATC 3 cut(s) 157, 357, 748
NlaIII CATG 5 cut(s) 80, 349, 711, 797, 837
NmuCI GTSAC 3 cut(s) 233, 335, 658
NspI RCATGY 1 cut(s) 80
PciI ACATGT 1 cut(s) 76
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 9 cut(s) 70, 92, 374, 382, 463, 523, 578, 628, 654
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
PscI ACATGT 1 cut(s) 76
Psp6I CCWGG 2 cut(s) 125, 642
PspGI CCWGG 2 cut(s) 125, 642
PstI CTGCAG 4 cut(s) 370, 382, 463, 511
PstNI CAGNNNCTG 1 cut(s) 467
RsaI GTAC 3 cut(s) 176, 301, 322
RsaNI GTAC 3 cut(s) 175, 300, 321
RseI CAYNNNNRTG 1 cut(s) 350
SatI GCNGC 9 cut(s) 69, 91, 373, 381, 462, 522, 577, 627, 653
Sau3AI GATC 3 cut(s) 157, 357, 748
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 127, 644
SduI GDGCHC 2 cut(s) 9, 250
SfaNI GCATC 3 cut(s) 140, 404, 421
SfcI CTRYAG 4 cut(s) 366, 378, 459, 507
SmiMI CAYNNNNRTG 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 8 cut(s) 18, 143, 478, 613, 632, 677, 686, 714
SsiI CCGC 3 cut(s) 521, 626, 629
SspMI CTAG 1 cut(s) 768
StyD4I CCNGG 2 cut(s) 125, 642
StyI CCWWGG 3 cut(s) 94, 238, 340
TaaI ACNGT 3 cut(s) 194, 233, 335
TaqI TCGA 2 cut(s) 257, 407
TasI AATT 8 cut(s) 18, 143, 478, 613, 632, 677, 686, 714
TatI WGTACW 1 cut(s) 174
TauI GCSGC 2 cut(s) 524, 629
TfiI GAWTC 1 cut(s) 107
TscAI CASTG 5 cut(s) 199, 255, 338, 382, 516
TseFI GTSAC 3 cut(s) 233, 335, 658
TseI GCWGC 7 cut(s) 68, 90, 372, 380, 461, 576, 652
Tsp45I GTSAC 3 cut(s) 233, 335, 658
TspDTI ATGAA 3 cut(s) 362, 606, 612
TspRI CASTG 5 cut(s) 199, 255, 338, 382, 516
VneI GTGCAC 1 cut(s) 246
XapI RAATTY 3 cut(s) 143, 677, 686
XceI RCATGY 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 607
XspI CTAG 1 cut(s) 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.