Rh2AG662600

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0015441
Physical Location & Seq
Forward (+)
87810797 .. 87811436
640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG662600.1

Sequence Viewer

Length: 543 bp
ATGGGGCTCAAGAACACAATTTTGTTGTCTTTGTTTTTTGTAGCTTTGGTTGCAAAGAAAGGCTTGGCAGCACAACATGTAGTTGGGGGCAGCCAAGGTTGGGAAGAATCCACAGACTTCAACTCCTGGGCATCTGCTCAGAAATTCAAGGTTGGAGATCAACTTGTTTTCAAGTACACTTCGGGTTTGCACAGTGTCGTTGAACTACCTAACGAGAGTGCCTTCAAGAACTGTGACCTTGGGAGTGCACTGGACTCGAAGAAGGGAGGAAACGATGTGGTGAAGTTGAACAAGGCCGGTACAAGATATTTTGCTTGTGGTACTTTGGGCCACTGTGACCAAGGCATGAAGGTGAAGATCACTACTGCAGGAAGCACTGCAGCTTCTTCTCCGGCATCATCATCCTCGAACGATGATGGTTCTTCTTCAGATGCTTCTACCACTACTTCTGCAGCTTCTGCAGCTTCTGCCAACTTCAATTCTTTCGCTTTGTTCTTTGCGATGACTGCAGTATGGGCACTCGTTCTGGTTTATGTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

180

Amino Acids

18.72

Weight (kDa)

7.7

Isoelectric Point (pI)

22.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 116 7.6e-23 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27200
fragaria_vesca FvH4_6g53210
malus_domestica MD09G1013000.v1.1 MD17G1013700.v1.1
prunus_persica Prupe.3G304200_v2.0.a1
pyrus_communis pycom111g01080 pycom111g01100
rosa_chinensis RchiOBHm_Chr2g0175271
rosa_laevigata RLG00000022316
rosa_multiflora Rmu_co8149708.1_g000001
rosa_rugosa Rorug02G0582300
rosa_samantha Rh2AG662600 Rh2BG673800 Rh2CG637000 Rh2DG687800
rosa_wichuraiana Rw2G054350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 3 cut(s) 176, 301, 322
AfiI CCNNNNNNNGG 1 cut(s) 100
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 7 cut(s) 121, 148, 172, 203, 226, 289, 478
AjnI CCWGG 1 cut(s) 125
AluBI AGCT 4 cut(s) 44, 383, 455, 464
AluI AGCT 4 cut(s) 44, 383, 455, 464
Alw21I GWGCWC 1 cut(s) 250
Alw44I GTGCAC 1 cut(s) 246
AlwNI CAGNNNCTG 2 cut(s) 458, 467
AoxI GGCC 2 cut(s) 294, 328
ApaLI GTGCAC 1 cut(s) 246
ApeKI GCWGC 5 cut(s) 68, 90, 380, 452, 461
ApoI RAATTY 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 328
AsuHPI GGTGA 2 cut(s) 292, 364
BaeGI GKGCMC 2 cut(s) 250, 520
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 5 cut(s) 80, 102, 392, 464, 473
BccI CCATC 1 cut(s) 410
BcgI CGANNNNNNTGC 2 cut(s) 237, 271
BciT130I CCWGG 1 cut(s) 127
BfmI CTRYAG 5 cut(s) 366, 378, 450, 459, 507
BisI GCNGC 5 cut(s) 69, 91, 381, 453, 462
BlsI GCNGC 5 cut(s) 70, 92, 382, 454, 463
Bme1390I CCNGG 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 328
BmrFI CCNGG 1 cut(s) 127
BmsI GCATC 3 cut(s) 140, 404, 421
BsaJI CCNNGG 4 cut(s) 94, 126, 238, 340
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 255
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 4 cut(s) 94, 126, 238, 340
BseGI GGATG 1 cut(s) 401
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 255
BseSI GKGCMC 2 cut(s) 250, 520
BseXI GCAGC 5 cut(s) 80, 102, 392, 464, 473
BshFI GGCC 2 cut(s) 296, 330
BsiHKAI GWGCWC 1 cut(s) 250
BsiSI CCGG 2 cut(s) 297, 392
BslI CCNNNNNNNGG 1 cut(s) 100
BsnI GGCC 2 cut(s) 296, 330
Bsp1286I GDGCHC 3 cut(s) 9, 250, 520
Bsp143I GATC 2 cut(s) 157, 357
BspANI GGCC 2 cut(s) 296, 330
BspCNI CTCAG 1 cut(s) 151
BspMAI CTGCAG 5 cut(s) 370, 382, 454, 463, 511
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 1 cut(s) 255
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 4 cut(s) 94, 126, 238, 340
BssMI GATC 2 cut(s) 157, 357
BssT1I CCWWGG 3 cut(s) 94, 238, 340
Bst2UI CCWGG 1 cut(s) 127
Bst4CI ACNGT 3 cut(s) 194, 233, 335
BstAPI GCANNNNNTGC 2 cut(s) 458, 467
BstDEI CTNAG 1 cut(s) 138
BstF5I GGATG 1 cut(s) 401
BstKTI GATC 2 cut(s) 160, 360
BstMBI GATC 2 cut(s) 157, 357
BstMWI GCNNNNNNNGC 6 cut(s) 50, 458, 461, 467, 506, 515
BstNI CCWGG 1 cut(s) 127
BstNSI RCATGY 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 125
BstSFI CTRYAG 5 cut(s) 366, 378, 450, 459, 507
BstSLI GKGCMC 2 cut(s) 250, 520
BstV1I GCAGC 5 cut(s) 80, 102, 392, 464, 473
BsuRI GGCC 2 cut(s) 296, 330
BtgZI GCGATG 1 cut(s) 515
BtsCI GGATG 1 cut(s) 401
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 4 cut(s) 199, 248, 331, 375
CaiI CAGNNNCTG 2 cut(s) 458, 467
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 328
Csp6I GTAC 3 cut(s) 175, 300, 321
CviAII CATG 2 cut(s) 77, 346
CviJI RGCY 9 cut(s) 7, 44, 63, 93, 296, 330, 383, 455, 464
CviKI_1 RGCY 9 cut(s) 7, 44, 63, 93, 296, 330, 383, 455, 464
CviQI GTAC 3 cut(s) 175, 300, 321
DdeI CTNAG 1 cut(s) 138
DpnI GATC 2 cut(s) 159, 359
DpnII GATC 2 cut(s) 157, 357
Eco130I CCWWGG 3 cut(s) 94, 238, 340
Eco24I GRGCYC 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 125
EcoT14I CCWWGG 3 cut(s) 94, 238, 340
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 3 cut(s) 94, 238, 340
FaeI CATG 2 cut(s) 80, 349
FaiI YATR 4 cut(s) 78, 347, 514, 534
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FatI CATG 2 cut(s) 76, 345
Fnu4HI GCNGC 5 cut(s) 69, 91, 381, 453, 462
FokI GGATG 1 cut(s) 388
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 5 cut(s) 69, 91, 381, 453, 462
GluI GCNGC 5 cut(s) 69, 91, 381, 453, 462
HaeIII GGCC 2 cut(s) 296, 330
HapII CCGG 2 cut(s) 297, 392
Hin1II CATG 2 cut(s) 80, 349
HinfI GANTC 2 cut(s) 107, 254
HpaII CCGG 2 cut(s) 297, 392
HphI GGTGA 2 cut(s) 292, 364
Hpy166II GTNNAC 2 cut(s) 177, 248
Hpy188I TCNGA 2 cut(s) 141, 430
Hpy188III TCNNGA 2 cut(s) 10, 226
Hpy8I GTNNAC 2 cut(s) 177, 248
HpyAV CCTTC 3 cut(s) 232, 256, 343
HpyCH4III ACNGT 3 cut(s) 194, 233, 335
HpyCH4V TGCA 8 cut(s) 53, 190, 248, 368, 380, 452, 461, 509
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 458, 461, 467, 506, 515
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 2 cut(s) 80, 349
Kzo9I GATC 2 cut(s) 157, 357
LpnPI CCDG 7 cut(s) 112, 139, 236, 310, 354, 405, 512
Lsp1109I GCAGC 5 cut(s) 80, 102, 392, 464, 473
LweI GCATC 3 cut(s) 140, 404, 421
MaeIII GTNAC 2 cut(s) 233, 335
MalI GATC 2 cut(s) 159, 359
MboI GATC 2 cut(s) 157, 357
MboII GAAGA 6 cut(s) 116, 271, 367, 378, 414, 417
MhlI GDGCHC 3 cut(s) 9, 250, 520
MluCI AATT 3 cut(s) 18, 143, 478
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 2 cut(s) 260, 415
MslI CAYNNNNRTG 1 cut(s) 350
MspI CCGG 2 cut(s) 297, 392
MspR9I CCNGG 1 cut(s) 127
MvaI CCWGG 1 cut(s) 127
MwoI GCNNNNNNNGC 6 cut(s) 50, 458, 461, 467, 506, 515
NdeII GATC 2 cut(s) 157, 357
NlaIII CATG 2 cut(s) 80, 349
NmuCI GTSAC 2 cut(s) 233, 335
NspI RCATGY 1 cut(s) 80
PciI ACATGT 1 cut(s) 76
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 5 cut(s) 70, 92, 382, 454, 463
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
PscI ACATGT 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PspPI GGNCC 1 cut(s) 328
PstI CTGCAG 5 cut(s) 370, 382, 454, 463, 511
PstNI CAGNNNCTG 2 cut(s) 458, 467
RsaI GTAC 3 cut(s) 176, 301, 322
RsaNI GTAC 3 cut(s) 175, 300, 321
RseI CAYNNNNRTG 1 cut(s) 350
SatI GCNGC 5 cut(s) 69, 91, 381, 453, 462
Sau3AI GATC 2 cut(s) 157, 357
Sau96I GGNCC 1 cut(s) 328
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 127
SduI GDGCHC 3 cut(s) 9, 250, 520
SetI ASST 9 cut(s) 46, 100, 153, 211, 240, 354, 385, 457, 466
SfaNI GCATC 3 cut(s) 140, 404, 421
SfcI CTRYAG 5 cut(s) 366, 378, 450, 459, 507
SmiMI CAYNNNNRTG 1 cut(s) 350
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 3 cut(s) 18, 143, 478
StyD4I CCNGG 1 cut(s) 125
StyI CCWWGG 3 cut(s) 94, 238, 340
TaaI ACNGT 3 cut(s) 194, 233, 335
TaqI TCGA 2 cut(s) 257, 407
TasI AATT 3 cut(s) 18, 143, 478
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 1 cut(s) 107
TscAI CASTG 4 cut(s) 199, 255, 338, 382
TseFI GTSAC 2 cut(s) 233, 335
TseI GCWGC 5 cut(s) 68, 90, 380, 452, 461
Tsp45I GTSAC 2 cut(s) 233, 335
TspDTI ATGAA 1 cut(s) 362
TspRI CASTG 4 cut(s) 199, 255, 338, 382
VneI GTGCAC 1 cut(s) 246
XapI RAATTY 1 cut(s) 143
XceI RCATGY 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.