pycom111g01100

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0015441
Physical Location & Seq
Reverse (-)
699953 .. 700936
984 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g01100.1

Sequence Viewer

Length: 546 bp
ATGGGGCGTACGAACACAGTTTTGTTGGTGTTGGTTTTTGCAGCTTTGTTCACAAAGGAAACCTTGGCAGCACAGCATGTTGTTGGGGGAAGCCAAGGCTGGGAGGAATCCACAGATTTGAACTCATGGGCGTCCGGCGAGAAATTTAAAGTTGGTGATCAACTTGTTTTTAAGTACACCTCGGGTCTGCATAGTGTGGTGGAGCTACCAAACGAGAGCGCCTACAAGAGCTGCAACACCGGCAATGCCCTAGACTCCAAGTCTAGCGGCAATGATGTGGTGAAACTGACCAAGGCCGGCACACGATATTTTGCTTGTGGCACTTTAGGCCACTGCGGCCAGGGCATGAAGATGAATCGATCACTACTGTCGCCGGAAACGCACCTTCTTCACCGTCGTCTTCTGCAGCAGCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCTGCATTCTGTCACTTCATTGTTTGGGATTGCTGCATTATCTGTCCCCCTTCTGCTTTCCATGTTTTAAACTTAGTGTTTTGGAGTATTTTGGGTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

182

Amino Acids

19.81

Weight (kDa)

8.48

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 116 4.8e-24 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015441)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27200
fragaria_vesca FvH4_6g53210
malus_domestica MD09G1013000.v1.1 MD17G1013700.v1.1
prunus_persica Prupe.3G304200_v2.0.a1
pyrus_communis pycom111g01080 pycom111g01100
rosa_chinensis RchiOBHm_Chr2g0175271
rosa_laevigata RLG00000022316
rosa_multiflora Rmu_co8149708.1_g000001
rosa_rugosa Rorug02G0582300
rosa_samantha Rh2AG662600 Rh2BG673800 Rh2CG637000 Rh2DG687800
rosa_wichuraiana Rw2G054350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 267, 336
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 1 cut(s) 143
AcyI GRCGYC 1 cut(s) 131
AfaI GTAC 2 cut(s) 10, 176
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 1 cut(s) 121
AhdI GACNNNNNGTC 1 cut(s) 259
AjnI CCWGG 1 cut(s) 339
AluBI AGCT 4 cut(s) 44, 205, 231, 412
AluI AGCT 4 cut(s) 44, 205, 231, 412
Ama87I CYCGRG 1 cut(s) 181
AoxI GGCC 3 cut(s) 294, 328, 337
ApeKI GCWGC 6 cut(s) 41, 68, 231, 406, 409, 475
ApoI RAATTY 1 cut(s) 143
AspLEI GCGC 1 cut(s) 221
AsuHPI GGTGA 3 cut(s) 167, 292, 383
AvaI CYCGRG 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 392
BbvI GCAGC 6 cut(s) 53, 80, 218, 418, 421, 462
BciT130I CCWGG 1 cut(s) 341
BclI TGATCA 1 cut(s) 157
BfaI CTAG 2 cut(s) 251, 264
BfmI CTRYAG 1 cut(s) 404
BfoI RGCGCY 1 cut(s) 222
BglI GCCNNNNNGGC 1 cut(s) 336
BisI GCNGC 8 cut(s) 42, 69, 232, 268, 337, 407, 410, 476
BlsI GCNGC 8 cut(s) 43, 70, 233, 269, 338, 408, 411, 477
Bme1390I CCNGG 1 cut(s) 341
BmeRI GACNNNNNGTC 1 cut(s) 259
BmeT110I CYCGRG 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 392
Bsa29I ATCGAT 1 cut(s) 358
BsaHI GRCGYC 1 cut(s) 131
BsaJI CCNNGG 5 cut(s) 63, 94, 180, 291, 340
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse118I RCCGGY 2 cut(s) 239, 296
Bse3DI GCAATG 2 cut(s) 250, 277
BseBI CCWGG 1 cut(s) 341
BseCI ATCGAT 1 cut(s) 358
BseDI CCNNGG 5 cut(s) 63, 94, 180, 291, 340
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMI GCAATG 2 cut(s) 250, 277
BseXI GCAGC 6 cut(s) 53, 80, 218, 418, 421, 462
BseYI CCCAGC 1 cut(s) 99
BshFI GGCC 3 cut(s) 296, 330, 339
BshVI ATCGAT 1 cut(s) 358
BsiHKCI CYCGRG 1 cut(s) 181
BsiSI CCGG 4 cut(s) 135, 240, 297, 374
BsiWI CGTACG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 472
BsmI GAATGC 1 cut(s) 447
BsnI GGCC 3 cut(s) 296, 330, 339
BsoBI CYCGRG 1 cut(s) 181
Bsp143I GATC 2 cut(s) 157, 359
BspACI CCGC 8 cut(s) 267, 336, 431, 473, 782, 932, 934, 1042
BspANI GGCC 3 cut(s) 296, 330, 339
BspDI ATCGAT 1 cut(s) 358
BspMAI CTGCAG 1 cut(s) 408
BsrDI GCAATG 2 cut(s) 250, 277
BsrFI RCCGGY 2 cut(s) 239, 296
BssAI RCCGGY 2 cut(s) 239, 296
BssECI CCNNGG 5 cut(s) 63, 94, 180, 291, 340
BssMI GATC 2 cut(s) 157, 359
BssNI GRCGYC 1 cut(s) 131
BssT1I CCWWGG 3 cut(s) 63, 94, 291
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 3 cut(s) 19, 369, 395
BstACI GRCGYC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 1 cut(s) 515
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 2 cut(s) 160, 362
BstMBI GATC 2 cut(s) 157, 359
BstMWI GCNNNNNNNGC 5 cut(s) 240, 327, 336, 342, 379
BstNI CCWGG 1 cut(s) 341
BstNSI RCATGY 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 339
BstSFI CTRYAG 1 cut(s) 404
BstV1I GCAGC 6 cut(s) 53, 80, 218, 418, 421, 462
BstV2I GAAGAC 1 cut(s) 392
Bsu15I ATCGAT 1 cut(s) 358
BsuRI GGCC 3 cut(s) 296, 330, 339
BsuTUI ATCGAT 1 cut(s) 358
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 331
Cac8I GCNNGC 1 cut(s) 298
CfoI GCGC 1 cut(s) 221
Cfr10I RCCGGY 2 cut(s) 239, 296
ClaI ATCGAT 1 cut(s) 358
CseI GACGC 1 cut(s) 120
Csp6I GTAC 2 cut(s) 9, 175
CviAII CATG 4 cut(s) 77, 126, 346, 504
CviJI RGCY 9 cut(s) 44, 93, 99, 205, 231, 296, 330, 339, 412
CviKI_1 RGCY 9 cut(s) 44, 93, 99, 205, 231, 296, 330, 339, 412
CviQI GTAC 2 cut(s) 9, 175
DdeI CTNAG 1 cut(s) 515
DpnI GATC 2 cut(s) 159, 361
DpnII GATC 2 cut(s) 157, 359
DraI TTTAAA 2 cut(s) 148, 511
DriI GACNNNNNGTC 1 cut(s) 259
EaeI YGGCCR 1 cut(s) 337
Eam1105I GACNNNNNGTC 1 cut(s) 259
Eco130I CCWWGG 3 cut(s) 63, 94, 291
Eco88I CYCGRG 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 339
EcoT14I CCWWGG 3 cut(s) 63, 94, 291
ErhI CCWWGG 3 cut(s) 63, 94, 291
FaeI CATG 4 cut(s) 80, 129, 349, 507
FaiI YATR 5 cut(s) 78, 127, 192, 347, 505
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FaqI GGGAC 1 cut(s) 472
FatI CATG 4 cut(s) 76, 125, 345, 503
FbaI TGATCA 1 cut(s) 157
Fnu4HI GCNGC 8 cut(s) 42, 69, 232, 268, 337, 407, 410, 476
Fsp4HI GCNGC 8 cut(s) 42, 69, 232, 268, 337, 407, 410, 476
FspBI CTAG 2 cut(s) 251, 264
GlaI GCGC 1 cut(s) 220
GluI GCNGC 8 cut(s) 42, 69, 232, 268, 337, 407, 410, 476
GsaI CCCAGC 1 cut(s) 103
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 3 cut(s) 296, 330, 339
HapII CCGG 4 cut(s) 135, 240, 297, 374
HgaI GACGC 1 cut(s) 120
HhaI GCGC 1 cut(s) 221
Hin1I GRCGYC 1 cut(s) 131
Hin1II CATG 4 cut(s) 80, 129, 349, 507
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HinfI GANTC 3 cut(s) 107, 254, 355
HpaII CCGG 4 cut(s) 135, 240, 297, 374
HphI GGTGA 3 cut(s) 167, 292, 383
Hpy166II GTNNAC 2 cut(s) 51, 177
Hpy8I GTNNAC 2 cut(s) 51, 177
Hpy99I CGWCG 1 cut(s) 399
HpyAV CCTTC 3 cut(s) 395, 425, 502
HpyCH4III ACNGT 3 cut(s) 19, 369, 395
HpyCH4V TGCA 6 cut(s) 41, 190, 234, 406, 447, 478
HpyF10VI GCNNNNNNNGC 5 cut(s) 240, 327, 336, 342, 379
HpyF3I CTNAG 1 cut(s) 515
Hsp92I GRCGYC 1 cut(s) 131
Hsp92II CATG 4 cut(s) 80, 129, 349, 507
HspAI GCGC 1 cut(s) 219
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 2 cut(s) 157, 359
LmnI GCTCC 2 cut(s) 202, 417
LpnPI CCDG 8 cut(s) 85, 148, 253, 310, 326, 353, 387, 457
Lsp1109I GCAGC 6 cut(s) 53, 80, 218, 418, 421, 462
MaeI CTAG 2 cut(s) 251, 264
MaeIII GTNAC 1 cut(s) 453
MalI GATC 2 cut(s) 159, 361
MboI GATC 2 cut(s) 157, 359
MluCI AATT 1 cut(s) 143
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 2 cut(s) 97, 190
MroNI GCCGGC 1 cut(s) 296
MseI TTAA 4 cut(s) 147, 171, 510, 544
MslI CAYNNNNRTG 1 cut(s) 350
MspI CCGG 4 cut(s) 135, 240, 297, 374
MspR9I CCNGG 1 cut(s) 341
Mva1269I GAATGC 1 cut(s) 447
MvaI CCWGG 1 cut(s) 341
MwoI GCNNNNNNNGC 5 cut(s) 240, 327, 336, 342, 379
NaeI GCCGGC 1 cut(s) 298
NdeII GATC 2 cut(s) 157, 359
NgoMIV GCCGGC 1 cut(s) 296
NlaIII CATG 4 cut(s) 80, 129, 349, 507
NmuCI GTSAC 1 cut(s) 453
NspI RCATGY 1 cut(s) 80
PctI GAATGC 1 cut(s) 447
PdiI GCCGGC 1 cut(s) 298
PfeI GAWTC 2 cut(s) 107, 355
Pfl23II CGTACG 1 cut(s) 8
PkrI GCNGC 8 cut(s) 43, 70, 233, 269, 338, 408, 411, 477
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 339
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 1 cut(s) 339
PspLI CGTACG 1 cut(s) 8
PstI CTGCAG 1 cut(s) 408
RsaI GTAC 2 cut(s) 10, 176
RsaNI GTAC 2 cut(s) 9, 175
RseI CAYNNNNRTG 1 cut(s) 350
SaqAI TTAA 4 cut(s) 147, 171, 510, 544
SatI GCNGC 8 cut(s) 42, 69, 232, 268, 337, 407, 410, 476
Sau3AI GATC 2 cut(s) 157, 359
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 341
SetI ASST 7 cut(s) 46, 65, 182, 207, 233, 387, 414
SfcI CTRYAG 1 cut(s) 404
SfiI GGCCNNNNNGGCC 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 350
Sse9I AATT 1 cut(s) 143
SsiI CCGC 2 cut(s) 267, 336
SspMI CTAG 2 cut(s) 251, 264
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 3 cut(s) 63, 94, 291
TaaI ACNGT 3 cut(s) 19, 369, 395
TaqI TCGA 1 cut(s) 358
TasI AATT 1 cut(s) 143
TatI WGTACW 1 cut(s) 174
TauI GCSGC 2 cut(s) 270, 339
TfiI GAWTC 2 cut(s) 107, 355
Tru1I TTAA 4 cut(s) 147, 171, 510, 544
Tru9I TTAA 4 cut(s) 147, 171, 510, 544
TscAI CASTG 1 cut(s) 338
TseFI GTSAC 1 cut(s) 453
TseI GCWGC 6 cut(s) 41, 68, 231, 406, 409, 475
Tsp45I GTSAC 1 cut(s) 453
TspDTI ATGAA 3 cut(s) 362, 368, 449
TspRI CASTG 1 cut(s) 338
XapI RAATTY 1 cut(s) 143
XceI RCATGY 1 cut(s) 80
XspI CTAG 2 cut(s) 251, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.