AT3G27240

Cytochrome C1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010327
Physical Location & Seq
Reverse (-)
10055730 .. 10058773
3044 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27240.1

Sequence Viewer

Length: 924 bp
ATGGTTGGAGGAGGAGTTATCCAGCAAATTCTTAGGAGGAAGCTTCACTCCCAATCACTTGCAACTCCGGTTTTGTCTTGGTTTTCTTCGAAGAAAGCTCATGAGGATGCTGGTTCTTCTGGTGTAAGAGCACTTGCCTTGTTGGGTGCTGGTGTTACAGGACTGTTGAGTTTTTCTACAGTAGCATCTGCTGATGAGGCTGAACATGGATTGGAGAGTCCAGAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCGATCCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTCAATGTCTCTGATCTCATACCGAGACTTGGTGGGTGTCGCCTACACAGAGGAAGAGGCAAAGGCAATGGCAGCTGAAATCGAGGTAGTAGATGGACCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGTAAACTCAGTGACCGGTTTCCTCAGCCATATGCAAATGAATCAGCTGCAAGGTTTGCTAATGGTGGAGCGTATCCTCCTGATCTAAGTCTTATAACTAAGGCACGTCACAATGGTCCAAACTATGTCTTTGCGCTTCTGACTGGTTACCGTGATCCCCCTGCTGGCATATCGATTAGAGAGGGGTTACACTACAATCCTTATTTCCCTGGGGGAGCAATTGCTATGCCGAAAATGCTCAATGATGAAGCTGTTGAGTATGAAGATGGTGTCCCCGCCACAGAGGCACAGATGGGTAAAGATATTGTATCATTCTTGGCCTGGGCAGCTGAACCAGAAATGGAAGAGAGGAAACTGATGGGTTTCAAATGGATATTCCTACTCTCTCTCGCTCTTCTCCAAGCTGCTTACTACAGGCGACTAAAATGGTCGGTTCTCAAGTCCCGCAAGCTGGTTCTTGACGTGGTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0005773 GO:0005774 GO:0005886 GO:0006091 GO:0006119 GO:0006122 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009055 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0016491 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045153 GO:0045155 GO:0045275 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902600 GO:1990204 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
Cytochrom_C1

Protein Analysis

307

Amino Acids

33.65

Weight (kDa)

5.74

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_C1 PF02167 78 - 294 1e-98 Cytochrome C1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 545
AciI CCGC 3 cut(s) 445, 726, 895
AclWI GGATC 2 cut(s) 268, 599
AcsI RAATTY 1 cut(s) 27
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 4 cut(s) 242, 349, 614, 901
AgeI ACCGGT 1 cut(s) 465
AgsI TTSAA 2 cut(s) 324, 817
AjiI CACGTC 2 cut(s) 557, 913
AjnI CCWGG 3 cut(s) 448, 658, 770
AluBI AGCT 9 cut(s) 43, 98, 255, 395, 497, 701, 779, 854, 901
AluI AGCT 9 cut(s) 43, 98, 255, 395, 497, 701, 779, 854, 901
Alw21I GWGCWC 1 cut(s) 133
Alw26I GTCTC 2 cut(s) 333, 339
AlwI GGATC 2 cut(s) 268, 599
AoxI GGCC 2 cut(s) 233, 768
ApeKI GCWGC 4 cut(s) 392, 497, 776, 854
ApoI RAATTY 1 cut(s) 27
AsiGI ACCGGT 1 cut(s) 465
AspLEI GCGC 1 cut(s) 586
AspS9I GGNCC 2 cut(s) 416, 566
AsuHPI GGTGA 2 cut(s) 433, 443
AsuII TTCGAA 1 cut(s) 89
AvaII GGWCC 2 cut(s) 416, 566
Bbv12I GWGCWC 1 cut(s) 133
BbvCI CCTCAGC 1 cut(s) 474
BbvI GCAGC 4 cut(s) 404, 484, 788, 841
BccI CCATC 5 cut(s) 236, 407, 710, 736, 802
BciT130I CCWGG 3 cut(s) 450, 660, 772
BciVI GTATCC 1 cut(s) 534
BcoDI GTCTC 2 cut(s) 333, 339
BfmI CTRYAG 2 cut(s) 177, 862
BfuI GTATCC 1 cut(s) 534
BglI GCCNNNNNGGC 1 cut(s) 734
BisI GCNGC 4 cut(s) 393, 498, 777, 855
BlsI GCNGC 4 cut(s) 394, 499, 778, 856
Bme1390I CCNGG 3 cut(s) 450, 660, 772
Bme18I GGWCC 2 cut(s) 416, 566
BmgBI CACGTC 2 cut(s) 557, 913
BmgT120I GGNCC 2 cut(s) 416, 566
BmrFI CCNGG 3 cut(s) 450, 660, 772
BmsI GCATC 4 cut(s) 97, 194, 295, 320
Bpu10I CCTNAGC 1 cut(s) 474
Bpu14I TTCGAA 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 872
Bsa29I ATCGAT 1 cut(s) 623
BsaJI CCNNGG 5 cut(s) 230, 448, 658, 659, 771
BsaWI WCCGGW 2 cut(s) 67, 465
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 4 cut(s) 242, 349, 614, 901
Bse118I RCCGGY 1 cut(s) 465
Bse1I ACTGG 1 cut(s) 598
Bse3DI GCAATG 1 cut(s) 393
BseBI CCWGG 3 cut(s) 450, 660, 772
BseCI ATCGAT 1 cut(s) 623
BseDI CCNNGG 5 cut(s) 230, 448, 658, 659, 771
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 4 cut(s) 242, 349, 614, 901
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 2 cut(s) 472, 488
BseNI ACTGG 1 cut(s) 598
BseRI GAGGAG 2 cut(s) 24, 27
BseXI GCAGC 4 cut(s) 404, 484, 788, 841
BshFI GGCC 2 cut(s) 235, 770
BshTI ACCGGT 1 cut(s) 465
BshVI ATCGAT 1 cut(s) 623
BsiHKAI GWGCWC 1 cut(s) 133
BsiSI CCGG 2 cut(s) 68, 466
BslFI GGGAC 2 cut(s) 707, 877
BslI CCNNNNNNNGG 4 cut(s) 242, 349, 614, 901
BsmAI GTCTC 2 cut(s) 333, 339
BsmFI GGGAC 2 cut(s) 707, 877
BsmI GAATGC 1 cut(s) 246
BsnI GGCC 2 cut(s) 235, 770
Bsp119I TTCGAA 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 4 cut(s) 273, 333, 532, 604
BspACI CCGC 3 cut(s) 445, 726, 895
BspANI GGCC 2 cut(s) 235, 770
BspCNI CTCAG 2 cut(s) 471, 487
BspDI ATCGAT 1 cut(s) 623
BspHI TCATGA 2 cut(s) 100, 238
BspPI GGATC 2 cut(s) 268, 599
BspQI GCTCTTC 1 cut(s) 849
BspT104I TTCGAA 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 393
BsrFI RCCGGY 1 cut(s) 465
BsrI ACTGG 1 cut(s) 598
BssAI RCCGGY 1 cut(s) 465
BssECI CCNNGG 5 cut(s) 230, 448, 658, 659, 771
BssMI GATC 4 cut(s) 273, 333, 532, 604
BssT1I CCWWGG 1 cut(s) 230
Bst2UI CCWGG 3 cut(s) 450, 660, 772
Bst4CI ACNGT 3 cut(s) 165, 181, 602
Bst6I CTCTTC 3 cut(s) 369, 789, 849
BstAPI GCANNNNNTGC 1 cut(s) 506
BstBI TTCGAA 1 cut(s) 89
BstC8I GCNNGC 2 cut(s) 616, 899
BstDEI CTNAG 6 cut(s) 32, 251, 458, 474, 536, 549
BstEII GGTNACC 1 cut(s) 596
BstF5I GGATG 1 cut(s) 112
BstHHI GCGC 1 cut(s) 586
BstKTI GATC 4 cut(s) 276, 336, 535, 607
BstMAI GTCTC 2 cut(s) 333, 339
BstMBI GATC 4 cut(s) 273, 333, 532, 604
BstMWI GCNNNNNNNGC 7 cut(s) 197, 252, 392, 506, 685, 734, 776
BstNI CCWGG 3 cut(s) 450, 660, 772
BstPI GGTNACC 1 cut(s) 596
BstSCI CCNGG 3 cut(s) 448, 658, 770
BstSFI CTRYAG 2 cut(s) 177, 862
BstV1I GCAGC 4 cut(s) 404, 484, 788, 841
Bsu15I ATCGAT 1 cut(s) 623
BsuI GTATCC 1 cut(s) 534
BsuRI GGCC 2 cut(s) 235, 770
BsuTUI ATCGAT 1 cut(s) 623
BtrI CACGTC 2 cut(s) 557, 913
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 2 cut(s) 616, 899
CciI TCATGA 2 cut(s) 100, 238
CfoI GCGC 1 cut(s) 586
Cfr10I RCCGGY 1 cut(s) 465
Cfr13I GGNCC 2 cut(s) 416, 566
ClaI ATCGAT 1 cut(s) 623
Csp6I GTAC 1 cut(s) 226
CspAI ACCGGT 1 cut(s) 465
CviAII CATG 5 cut(s) 101, 206, 239, 266, 315
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 6 cut(s) 32, 251, 458, 474, 536, 549
DpnI GATC 4 cut(s) 275, 335, 534, 606
DpnII GATC 4 cut(s) 273, 333, 532, 604
Eam1104I CTCTTC 3 cut(s) 369, 789, 849
EarI CTCTTC 3 cut(s) 369, 789, 849
Eco130I CCWWGG 1 cut(s) 230
Eco47I GGWCC 2 cut(s) 416, 566
Eco91I GGTNACC 1 cut(s) 596
EcoO65I GGTNACC 1 cut(s) 596
EcoRII CCWGG 3 cut(s) 448, 658, 770
EcoT14I CCWWGG 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 230
FaeI CATG 5 cut(s) 104, 209, 242, 269, 318
FaqI GGGAC 2 cut(s) 707, 877
FatI CATG 5 cut(s) 100, 205, 238, 265, 314
FauI CCCGC 3 cut(s) 452, 733, 902
FauNDI CATATG 2 cut(s) 259, 481
Fnu4HI GCNGC 4 cut(s) 393, 498, 777, 855
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 4 cut(s) 393, 498, 777, 855
GlaI GCGC 1 cut(s) 585
GluI GCNGC 4 cut(s) 393, 498, 777, 855
HaeIII GGCC 2 cut(s) 235, 770
HapII CCGG 2 cut(s) 68, 466
HhaI GCGC 1 cut(s) 586
Hin1II CATG 5 cut(s) 104, 209, 242, 269, 318
Hin6I GCGC 1 cut(s) 584
HinP1I GCGC 1 cut(s) 584
HincII GTYRAC 1 cut(s) 919
HindII GTYRAC 1 cut(s) 919
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 2 cut(s) 217, 491
HpaI GTTAAC 1 cut(s) 919
HpaII CCGG 2 cut(s) 68, 466
HphI GGTGA 2 cut(s) 433, 443
Hpy166II GTNNAC 3 cut(s) 441, 455, 919
Hpy188I TCNGA 2 cut(s) 333, 591
Hpy188III TCNNGA 5 cut(s) 101, 221, 239, 530, 908
Hpy8I GTNNAC 3 cut(s) 441, 455, 919
Hpy99I CGWCG 1 cut(s) 282
HpyCH4III ACNGT 3 cut(s) 165, 181, 602
HpyCH4IV ACGT 2 cut(s) 556, 912
HpyCH4V TGCA 4 cut(s) 62, 311, 485, 500
HpyF10VI GCNNNNNNNGC 7 cut(s) 197, 252, 392, 506, 685, 734, 776
HpyF3I CTNAG 6 cut(s) 32, 251, 458, 474, 536, 549
HpySE526I ACGT 2 cut(s) 556, 912
Hsp92II CATG 5 cut(s) 104, 209, 242, 269, 318
HspAI GCGC 1 cut(s) 584
KspAI GTTAAC 1 cut(s) 919
Kzo9I GATC 4 cut(s) 273, 333, 532, 604
LguI GCTCTTC 1 cut(s) 849
LmnI GCTCC 2 cut(s) 518, 665
Lsp1109I GCAGC 4 cut(s) 404, 484, 788, 841
LweI GCATC 4 cut(s) 97, 194, 295, 320
MaeII ACGT 2 cut(s) 556, 912
MaeIII GTNAC 5 cut(s) 154, 461, 557, 596, 636
MalI GATC 4 cut(s) 275, 335, 534, 606
MboI GATC 4 cut(s) 273, 333, 532, 604
MboII GAAGA 7 cut(s) 78, 103, 108, 386, 725, 806, 836
MfeI CAATTG 1 cut(s) 669
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 2 cut(s) 27, 669
MlyI GAGTC 1 cut(s) 226
MseI TTAA 1 cut(s) 918
MslI CAYNNNNRTG 1 cut(s) 105
MspA1I CMGCKG 3 cut(s) 395, 497, 779
MspI CCGG 2 cut(s) 68, 466
MspR9I CCNGG 3 cut(s) 450, 660, 772
MunI CAATTG 1 cut(s) 669
Mva1269I GAATGC 1 cut(s) 246
MvaI CCWGG 3 cut(s) 450, 660, 772
MwoI GCNNNNNNNGC 7 cut(s) 197, 252, 392, 506, 685, 734, 776
NdeI CATATG 2 cut(s) 259, 481
NdeII GATC 4 cut(s) 273, 333, 532, 604
NlaIII CATG 5 cut(s) 104, 209, 242, 269, 318
NmuCI GTSAC 2 cut(s) 461, 557
NspV TTCGAA 1 cut(s) 89
PagI TCATGA 2 cut(s) 100, 238
PasI CCCWGGG 1 cut(s) 659
PciSI GCTCTTC 1 cut(s) 849
PctI GAATGC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 491
PinAI ACCGGT 1 cut(s) 465
PkrI GCNGC 4 cut(s) 394, 499, 778, 856
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
PsiI TTATAA 1 cut(s) 545
Psp6I CCWGG 3 cut(s) 448, 658, 770
PspEI GGTNACC 1 cut(s) 596
PspGI CCWGG 3 cut(s) 448, 658, 770
PspPI GGNCC 2 cut(s) 416, 566
PvuII CAGCTG 3 cut(s) 395, 497, 779
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 105
SapI GCTCTTC 1 cut(s) 849
SaqAI TTAA 1 cut(s) 918
SatI GCNGC 4 cut(s) 393, 498, 777, 855
Sau3AI GATC 4 cut(s) 273, 333, 532, 604
Sau96I GGNCC 2 cut(s) 416, 566
SchI GAGTC 1 cut(s) 226
ScrFI CCNGG 3 cut(s) 450, 660, 772
SduI GDGCHC 1 cut(s) 133
SfaNI GCATC 4 cut(s) 97, 194, 295, 320
SfcI CTRYAG 2 cut(s) 177, 862
SfuI TTCGAA 1 cut(s) 89
SinI GGWCC 2 cut(s) 416, 566
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
Sse9I AATT 2 cut(s) 27, 669
SsiI CCGC 3 cut(s) 445, 726, 895
StyD4I CCNGG 3 cut(s) 448, 658, 770
StyI CCWWGG 1 cut(s) 230
TaaI ACNGT 3 cut(s) 165, 181, 602
TaiI ACGT 2 cut(s) 559, 915
TaqI TCGA 4 cut(s) 89, 272, 402, 623
TasI AATT 2 cut(s) 27, 669
TfiI GAWTC 1 cut(s) 491
Tru1I TTAA 1 cut(s) 918
Tru9I TTAA 1 cut(s) 918
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 2 cut(s) 461, 557
TseI GCWGC 4 cut(s) 392, 497, 776, 854
Tsp45I GTSAC 2 cut(s) 461, 557
TspDTI ATGAA 3 cut(s) 504, 711, 726
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 1 cut(s) 466
VpaK11BI GGWCC 2 cut(s) 416, 566
XapI RAATTY 1 cut(s) 27
XcmI CCANNNNNNNNNTGG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.