Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010327

Physical Location & Seq

Genomic Coordinates Forward (+)

1290395 .. 1293737

Gene Structure 3343 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1016000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTATGGAATATTGACTAAAATGGCTGGAGGAGCGATCCGCCAGTTATTGAGGAGGAAGCTTCAGTCTCAATCTACTGCCTCTCCATTATTGGCTTCCCTAGCACATAAGAAAGATGATGCTGGGTCTGCTGGGGCAAGGTCTCTCAGAGCACTTGCGCTCCTTGGAGCTGGTGTTTCAGGACTGTTAAGTTTTGCAACTACTGTTGCATCTGCGGATGAGGCTGAACACGGATTAGATAGCCCACACTACCCCTGGCCTCACGCGGGAATCCTTAGCTCATATGATCATGCTTCGATTCGTCGTGGTCATCAGGTTTACACACAAGTCTGTGCATCCTGCCATTCCATGTCTTTAATATCTTACCGTGATCTGGTGGGTGTTGCTTATACCGAAGAGGAGACAAAGGCTATGGCAGCTGAGATTGAGGTAACTGATGGGCCTAACGATGAGGGTGAGATGTTTACTCGCCCTGGTAAACTTAGTGATCGATTCCCGCAGCCATATGCAAATGAGCAGGCAGCTAGGTTTGCTAATGGTGGAGCATATCCTCCTGATTTGAGTCTTATTACAAAGGCTCGTCACAATGGTCAGAATTATGTATTTGCCCTTCTCACCGGTTACCGTGATCCTCCAGCTGGTGTTCAGATCCGAGAGGGCCTGCACTATAATCCATACTTTCCGGGGGGAGCAATTGCTATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTACGAAGATGGTACTCCTGCAACTGAGGCTCAGATGGGGAAAGATGTTGTATCATTCTTGACTTGGGCTGCAGAACCAGAAATGGAAGAGAGGAAACTCATGGGATTCAAATGGATCTTTGTTCTCTCGCTGGCGCTACTTCAAGCTGCATACTACCGGCGCTTGAAGTGGTCAGTTCTCAAGTCCCGCAAGCTGGTTCTTGATGTTGTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Cytochrom_C1

Protein Analysis

316

Amino Acids

34.38

Weight (kDa)

6.76

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cytochrom_C1	PF02167	86 - 302	1.1e-100	Cytochrome C1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27240 AT5G40810 AT5G40810
fragaria_vesca	FvH4_6g52970 FvH4_6g52970
malus_domestica	MD09G1015600.v1.1 MD17G1016000.v1.1
prunus_persica	Prupe.3G301700_v2.0.a1 Prupe.3G301700_v2.0.a1
pyrus_communis	pycom111g01270 pycom17g01290
rosa_chinensis	RchiOBHm_Chr2g0174681
rosa_laevigata	RLG00000022285
rosa_roxburghii	Rroxscaffold_2G00077940
rosa_rugosa	Rorug02G0578700 Rorug02G0578700
rosa_samantha	Rh2AG660000 Rh2BG670900 Rh2CG634100 Rh2DG684500
rosa_wichuraiana	Rw2G054060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	266
AciI	CCGC	5 cut(s)	40, 215, 266, 497, 919
AclWI	GGATC	4 cut(s)	31, 623, 643, 854
AcuI	CTGAAG	1 cut(s)	47
AfaI	GTAC	2 cut(s)	734, 745
AfiI	CCNNNNNNNGG	4 cut(s)	266, 373, 638, 925
AgeI	ACCGGT	1 cut(s)	617
AgsI	TTSAA	3 cut(s)	841, 875, 898
AjnI	CCWGG	2 cut(s)	254, 472
AluBI	AGCT	8 cut(s)	61, 170, 279, 419, 524, 638, 878, 925
AluI	AGCT	8 cut(s)	61, 170, 279, 419, 524, 638, 878, 925
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	3 cut(s)	72, 147, 395
AlwI	GGATC	4 cut(s)	31, 623, 643, 854
AoxI	GGCC	3 cut(s)	257, 440, 658
ApeKI	GCWGC	5 cut(s)	416, 499, 521, 800, 878
AsiGI	ACCGGT	1 cut(s)	617
AspLEI	GCGC	3 cut(s)	160, 868, 894
AspS9I	GGNCC	2 cut(s)	440, 658
AsuC2I	CCSGG	1 cut(s)	684
AsuHPI	GGTGA	2 cut(s)	467, 607
BarI	GAAGNNNNNNTAC	2 cut(s)	594, 626
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	5 cut(s)	428, 511, 533, 787, 865
BccI	CCATC	4 cut(s)	431, 713, 734, 760
BciT130I	CCWGG	2 cut(s)	256, 474
BclI	TGATCA	1 cut(s)	286
BcnI	CCSGG	1 cut(s)	684
BcoDI	GTCTC	3 cut(s)	72, 147, 395
BfaI	CTAG	2 cut(s)	101, 525
BfmI	CTRYAG	1 cut(s)	801
BfoI	RGCGCY	2 cut(s)	869, 895
BisI	GCNGC	5 cut(s)	417, 500, 522, 801, 879
BlsI	GCNGC	5 cut(s)	418, 501, 523, 802, 880
Bme1390I	CCNGG	3 cut(s)	256, 474, 684
BmgT120I	GGNCC	2 cut(s)	440, 658
BmrFI	CCNGG	3 cut(s)	256, 474, 684
BmsI	GCATC	3 cut(s)	109, 218, 344
BpmI	CTGGAG	2 cut(s)	48, 618
Bpu10I	CCTNAGC	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	896
BpuMI	CCSGG	1 cut(s)	684
Bsa29I	ATCGAT	1 cut(s)	490
BsaI	GGTCTC	1 cut(s)	147
BsaJI	CCNNGG	4 cut(s)	163, 254, 472, 683
BsaWI	WCCGGW	1 cut(s)	617
BsaXI	ACNNNNNCTCC	6 cut(s)	67, 97, 144, 159, 174, 189
Bsc4I	CCNNNNNNNGG	4 cut(s)	266, 373, 638, 925
Bse118I	RCCGGY	2 cut(s)	617, 888
Bse1I	ACTGG	1 cut(s)	43
BseBI	CCWGG	2 cut(s)	256, 474
BseCI	ATCGAT	1 cut(s)	490
BseDI	CCNNGG	4 cut(s)	163, 254, 472, 683
BseGI	GGATG	2 cut(s)	223, 335
BseLI	CCNNNNNNNGG	4 cut(s)	266, 373, 638, 925
BseMII	CTCAG	4 cut(s)	160, 411, 747, 776
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	3 cut(s)	45, 67, 413
BseXI	GCAGC	5 cut(s)	428, 511, 533, 787, 865
BseYI	CCCAGC	2 cut(s)	122, 131
BsgI	GTGCAG	1 cut(s)	647
Bsh1236I	CGCG	1 cut(s)	266
BshFI	GGCC	3 cut(s)	259, 442, 660
BshTI	ACCGGT	1 cut(s)	617
BshVI	ATCGAT	1 cut(s)	490
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	3 cut(s)	618, 683, 889
BslFI	GGGAC	1 cut(s)	901
BslI	CCNNNNNNNGG	4 cut(s)	266, 373, 638, 925
BsmAI	GTCTC	3 cut(s)	72, 147, 395
BsmFI	GGGAC	1 cut(s)	901
BsnI	GGCC	3 cut(s)	259, 442, 660
Bso31I	GGTCTC	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	7 cut(s)	36, 286, 370, 487, 628, 648, 846
BspACI	CCGC	5 cut(s)	40, 215, 266, 497, 919
BspANI	GGCC	3 cut(s)	259, 442, 660
BspCNI	CTCAG	4 cut(s)	159, 412, 748, 775
BspDI	ATCGAT	1 cut(s)	490
BspFNI	CGCG	1 cut(s)	266
BspMAI	CTGCAG	1 cut(s)	805
BspPI	GGATC	4 cut(s)	31, 623, 643, 854
BspTNI	GGTCTC	1 cut(s)	147
BsrFI	RCCGGY	2 cut(s)	617, 888
BsrI	ACTGG	1 cut(s)	43
BssAI	RCCGGY	2 cut(s)	617, 888
BssECI	CCNNGG	4 cut(s)	163, 254, 472, 683
BssMI	GATC	7 cut(s)	36, 286, 370, 487, 628, 648, 846
BssT1I	CCWWGG	1 cut(s)	163
Bst2UI	CCWGG	2 cut(s)	256, 474
Bst4CI	ACNGT	4 cut(s)	186, 205, 368, 626
Bst6I	CTCTTC	2 cut(s)	390, 813
BstC8I	GCNNGC	4 cut(s)	519, 662, 864, 923
BstDEI	CTNAG	6 cut(s)	146, 275, 420, 482, 756, 762
BstEII	GGTNACC	1 cut(s)	620
BstF5I	GGATG	2 cut(s)	223, 335
BstFNI	CGCG	1 cut(s)	266
BstH2I	RGCGCY	2 cut(s)	869, 895
BstHHI	GCGC	3 cut(s)	160, 868, 894
BstKTI	GATC	7 cut(s)	39, 289, 373, 490, 631, 651, 849
BstMAI	GTCTC	3 cut(s)	72, 147, 395
BstMBI	GATC	7 cut(s)	36, 286, 370, 487, 628, 648, 846
BstMWI	GCNNNNNNNGC	8 cut(s)	32, 101, 128, 221, 416, 530, 709, 758
BstNI	CCWGG	2 cut(s)	256, 474
BstPI	GGTNACC	1 cut(s)	620
BstSCI	CCNGG	3 cut(s)	254, 472, 682
BstSFI	CTRYAG	1 cut(s)	801
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	5 cut(s)	428, 511, 533, 787, 865
BstX2I	RGATCY	2 cut(s)	648, 846
BstYI	RGATCY	2 cut(s)	648, 846
Bsu15I	ATCGAT	1 cut(s)	490
BsuRI	GGCC	3 cut(s)	259, 442, 660
BsuTUI	ATCGAT	1 cut(s)	490
BtsCI	GGATG	2 cut(s)	223, 335
Cac8I	GCNNGC	4 cut(s)	519, 662, 864, 923
CfoI	GCGC	3 cut(s)	160, 868, 894
Cfr10I	RCCGGY	2 cut(s)	617, 888
Cfr13I	GGNCC	2 cut(s)	440, 658
ClaI	ATCGAT	1 cut(s)	490
Csp6I	GTAC	2 cut(s)	733, 744
CspAI	ACCGGT	1 cut(s)	617
CviAII	CATG	3 cut(s)	290, 349, 832
CviQI	GTAC	2 cut(s)	733, 744
DdeI	CTNAG	6 cut(s)	146, 275, 420, 482, 756, 762
DpnI	GATC	7 cut(s)	38, 288, 372, 489, 630, 650, 848
DpnII	GATC	7 cut(s)	36, 286, 370, 487, 628, 648, 846
Eam1104I	CTCTTC	2 cut(s)	390, 813
EarI	CTCTTC	2 cut(s)	390, 813
EciI	GGCGGA	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	163
Eco31I	GGTCTC	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	47
Eco91I	GGTNACC	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	658
EcoO65I	GGTNACC	1 cut(s)	620
EcoRII	CCWGG	2 cut(s)	254, 472
EcoT14I	CCWWGG	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	3 cut(s)	293, 352, 835
FaqI	GGGAC	1 cut(s)	901
FatI	CATG	3 cut(s)	289, 348, 831
FauI	CCCGC	3 cut(s)	259, 504, 926
FauNDI	CATATG	2 cut(s)	283, 505
FbaI	TGATCA	1 cut(s)	286
Fnu4HI	GCNGC	5 cut(s)	417, 500, 522, 801, 879
FokI	GGATG	2 cut(s)	230, 322
Fsp4HI	GCNGC	5 cut(s)	417, 500, 522, 801, 879
FspBI	CTAG	2 cut(s)	101, 525
GlaI	GCGC	3 cut(s)	159, 867, 893
GluI	GCNGC	5 cut(s)	417, 500, 522, 801, 879
GsaI	CCCAGC	2 cut(s)	126, 135
GsuI	CTGGAG	2 cut(s)	48, 618
HaeII	RGCGCY	2 cut(s)	869, 895
HaeIII	GGCC	3 cut(s)	259, 442, 660
HapII	CCGG	3 cut(s)	618, 683, 889
HhaI	GCGC	3 cut(s)	160, 868, 894
Hin1II	CATG	3 cut(s)	293, 352, 835
Hin6I	GCGC	3 cut(s)	158, 866, 892
HinP1I	GCGC	3 cut(s)	158, 866, 892
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	5 cut(s)	270, 298, 492, 562, 837
HpaII	CCGG	3 cut(s)	618, 683, 889
HphI	GGTGA	2 cut(s)	467, 607
Hpy166II	GTNNAC	4 cut(s)	319, 465, 479, 943
Hpy188I	TCNGA	5 cut(s)	149, 594, 648, 653, 765
Hpy188III	TCNNGA	4 cut(s)	180, 554, 790, 932
Hpy8I	GTNNAC	4 cut(s)	319, 465, 479, 943
Hpy99I	CGWCG	1 cut(s)	306
HpyAV	CCTTC	1 cut(s)	620
HpyCH4III	ACNGT	4 cut(s)	186, 205, 368, 626
HpyCH4V	TGCA	8 cut(s)	197, 209, 335, 509, 664, 752, 803, 881
HpyF10VI	GCNNNNNNNGC	8 cut(s)	32, 101, 128, 221, 416, 530, 709, 758
HpyF3I	CTNAG	6 cut(s)	146, 275, 420, 482, 756, 762
Hsp92II	CATG	3 cut(s)	293, 352, 835
HspAI	GCGC	3 cut(s)	158, 866, 892
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	7 cut(s)	36, 286, 370, 487, 628, 648, 846
LmnI	GCTCC	5 cut(s)	32, 165, 167, 542, 689
Lsp1109I	GCAGC	5 cut(s)	428, 511, 533, 787, 865
LweI	GCATC	3 cut(s)	109, 218, 344
MaeI	CTAG	2 cut(s)	101, 525
MaeIII	GTNAC	3 cut(s)	430, 581, 620
MalI	GATC	7 cut(s)	38, 288, 372, 489, 630, 650, 848
MboI	GATC	7 cut(s)	36, 286, 370, 487, 628, 648, 846
MboII	GAAGA	3 cut(s)	407, 749, 830
MfeI	CAATTG	1 cut(s)	693
MflI	RGATCY	2 cut(s)	648, 846
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	2 cut(s)	595, 693
MlyI	GAGTC	1 cut(s)	571
MseI	TTAA	3 cut(s)	188, 356, 714
MspA1I	CMGCKG	2 cut(s)	419, 638
MspI	CCGG	3 cut(s)	618, 683, 889
MspR9I	CCNGG	3 cut(s)	256, 474, 684
MunI	CAATTG	1 cut(s)	693
MvaI	CCWGG	2 cut(s)	256, 474
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	8 cut(s)	32, 101, 128, 221, 416, 530, 709, 758
NciI	CCSGG	1 cut(s)	684
NdeI	CATATG	2 cut(s)	283, 505
NdeII	GATC	7 cut(s)	36, 286, 370, 487, 628, 648, 846
NlaIII	CATG	3 cut(s)	293, 352, 835
NmuCI	GTSAC	1 cut(s)	581
PfeI	GAWTC	4 cut(s)	270, 298, 492, 837
PinAI	ACCGGT	1 cut(s)	617
PkrI	GCNGC	5 cut(s)	418, 501, 523, 802, 880
PleI	GAGTC	1 cut(s)	570
PpsI	GAGTC	1 cut(s)	570
Psp6I	CCWGG	2 cut(s)	254, 472
PspEI	GGTNACC	1 cut(s)	620
PspFI	CCCAGC	2 cut(s)	122, 131
PspGI	CCWGG	2 cut(s)	254, 472
PspPI	GGNCC	2 cut(s)	440, 658
PstI	CTGCAG	1 cut(s)	805
PsuI	RGATCY	2 cut(s)	648, 846
PvuII	CAGCTG	2 cut(s)	419, 638
RsaI	GTAC	2 cut(s)	734, 745
RsaNI	GTAC	2 cut(s)	733, 744
SaqAI	TTAA	3 cut(s)	188, 356, 714
SatI	GCNGC	5 cut(s)	417, 500, 522, 801, 879
Sau3AI	GATC	7 cut(s)	36, 286, 370, 487, 628, 648, 846
Sau96I	GGNCC	2 cut(s)	440, 658
SchI	GAGTC	1 cut(s)	571
ScrFI	CCNGG	3 cut(s)	256, 474, 684
SduI	GDGCHC	1 cut(s)	154
SfaNI	GCATC	3 cut(s)	109, 218, 344
SfcI	CTRYAG	1 cut(s)	801
SmlI	CTYRAG	1 cut(s)	911
SmoI	CTYRAG	1 cut(s)	911
Sse9I	AATT	2 cut(s)	595, 693
SsiI	CCGC	5 cut(s)	40, 215, 266, 497, 919
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	2 cut(s)	101, 525
StyD4I	CCNGG	3 cut(s)	254, 472, 682
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	4 cut(s)	186, 205, 368, 626
TaqI	TCGA	2 cut(s)	296, 490
TasI	AATT	2 cut(s)	595, 693
TfiI	GAWTC	4 cut(s)	270, 298, 492, 837
Tru1I	TTAA	3 cut(s)	188, 356, 714
Tru9I	TTAA	3 cut(s)	188, 356, 714
TseFI	GTSAC	1 cut(s)	581
TseI	GCWGC	5 cut(s)	416, 499, 521, 800, 878
Tsp45I	GTSAC	1 cut(s)	581
TspGWI	ACGGA	1 cut(s)	246
XcmI	CCANNNNNNNNNTGG	1 cut(s)	252
XspI	CTAG	2 cut(s)	101, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.