Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0010327

Physical Location & Seq

Genomic Coordinates Forward (+)

813705 .. 815022

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g01270.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTCTTTAATATCCTACCGTGATTTGGTGGGTGTTGCTTATACCGAAGAGGAGACAAAGGCTATGGCAGCTGAGATTGAGGTAACTGATGGGCCGAACGACGAGGGTGAGTTGTTTACTCGCCCTGGTAAACTTAGTGATCGATCCCCGCAGCCATATGCAAATGAGCAGGCAGCTAGGTTTGCTAATGGTGGAGCATATCCTCCTGATTTGAGTCTTATTACAAAGGCTCGTCACAATGGTCAGAATTATGTATTTGCCCTTCTCACCGGTTACCGTGATCCTCCAGCTGGTGTTCAGATCCGAGATGGCCTGCACTATAATCCGTACTTTCCTGGGGGAGCAATTGCTATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTACGAAGATGGTACTCCTGCAACTGAGGCTCAGATGGGTAAAGATGTTGTGTCATTCTTGACATGGGCCGCAGAACCAGAAATGGAAGAGCGAAAACTCATGGGATTCAAATGGATCTTTGTTCTCTCTCTGGCGCTACTTCAAGCTGCATACTACCGGCGCTTGAAGTGGTCAGTTCTCAAGTCCCGCAAGCTGGTTCTCGACGTTGTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Cytochrom_C1

Protein Analysis

200

Amino Acids

22.14

Weight (kDa)

5.16

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27240 AT5G40810 AT5G40810
fragaria_vesca	FvH4_6g52970 FvH4_6g52970
malus_domestica	MD09G1015600.v1.1 MD17G1016000.v1.1
prunus_persica	Prupe.3G301700_v2.0.a1 Prupe.3G301700_v2.0.a1
pyrus_communis	pycom111g01270 pycom17g01290
rosa_chinensis	RchiOBHm_Chr2g0174681
rosa_laevigata	RLG00000022285
rosa_roxburghii	Rroxscaffold_2G00077940
rosa_rugosa	Rorug02G0578700 Rorug02G0578700
rosa_samantha	Rh2AG660000 Rh2BG670900 Rh2CG634100 Rh2DG684500
rosa_wichuraiana	Rw2G054060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	149, 453, 571
AclWI	GGATC	4 cut(s)	138, 275, 295, 506
AfaI	GTAC	3 cut(s)	329, 386, 397
AfiI	CCNNNNNNNGG	3 cut(s)	25, 290, 577
AgeI	ACCGGT	1 cut(s)	269
AgsI	TTSAA	3 cut(s)	493, 527, 550
AjnI	CCWGG	2 cut(s)	124, 334
AluBI	AGCT	5 cut(s)	71, 176, 290, 530, 577
AluI	AGCT	5 cut(s)	71, 176, 290, 530, 577
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	4 cut(s)	138, 275, 295, 506
AoxI	GGCC	3 cut(s)	92, 310, 450
ApeKI	GCWGC	4 cut(s)	68, 151, 173, 530
AsiGI	ACCGGT	1 cut(s)	269
AspLEI	GCGC	2 cut(s)	520, 546
AspS9I	GGNCC	2 cut(s)	92, 450
AsuHPI	GGTGA	2 cut(s)	119, 259
BarI	GAAGNNNNNNTAC	2 cut(s)	246, 278
BbvI	GCAGC	4 cut(s)	80, 163, 185, 517
BccI	CCATC	5 cut(s)	83, 302, 365, 386, 412
BciT130I	CCWGG	2 cut(s)	126, 336
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	177
BfoI	RGCGCY	2 cut(s)	521, 547
BisI	GCNGC	5 cut(s)	69, 152, 174, 453, 531
BlsI	GCNGC	5 cut(s)	70, 153, 175, 454, 532
Bme1390I	CCNGG	2 cut(s)	126, 336
BmgT120I	GGNCC	2 cut(s)	92, 450
BmrFI	CCNGG	2 cut(s)	126, 336
BpmI	CTGGAG	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	548
Bsa29I	ATCGAT	1 cut(s)	142
BsaJI	CCNNGG	2 cut(s)	124, 335
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 290, 577
Bse118I	RCCGGY	2 cut(s)	269, 540
BseBI	CCWGG	2 cut(s)	126, 336
BseCI	ATCGAT	1 cut(s)	142
BseDI	CCNNGG	2 cut(s)	124, 335
BseLI	CCNNNNNNNGG	3 cut(s)	25, 290, 577
BseMII	CTCAG	3 cut(s)	63, 399, 428
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	4 cut(s)	80, 163, 185, 517
BsgI	GTGCAG	1 cut(s)	299
BshFI	GGCC	3 cut(s)	94, 312, 452
BshTI	ACCGGT	1 cut(s)	269
BshVI	ATCGAT	1 cut(s)	142
BsiSI	CCGG	2 cut(s)	270, 541
BslFI	GGGAC	1 cut(s)	553
BslI	CCNNNNNNNGG	3 cut(s)	25, 290, 577
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	553
BsnI	GGCC	3 cut(s)	94, 312, 452
Bsp143I	GATC	5 cut(s)	139, 143, 280, 300, 498
BspACI	CCGC	3 cut(s)	149, 453, 571
BspANI	GGCC	3 cut(s)	94, 312, 452
BspCNI	CTCAG	3 cut(s)	64, 400, 427
BspDI	ATCGAT	1 cut(s)	142
BspPI	GGATC	4 cut(s)	138, 275, 295, 506
BspQI	GCTCTTC	1 cut(s)	465
BsrFI	RCCGGY	2 cut(s)	269, 540
BssAI	RCCGGY	2 cut(s)	269, 540
BssECI	CCNNGG	2 cut(s)	124, 335
BssMI	GATC	5 cut(s)	139, 143, 280, 300, 498
Bst2UI	CCWGG	2 cut(s)	126, 336
Bst4CI	ACNGT	2 cut(s)	20, 278
Bst6I	CTCTTC	2 cut(s)	42, 465
BstC8I	GCNNGC	3 cut(s)	171, 314, 575
BstDEI	CTNAG	4 cut(s)	72, 134, 408, 414
BstEII	GGTNACC	1 cut(s)	272
BstH2I	RGCGCY	2 cut(s)	521, 547
BstHHI	GCGC	2 cut(s)	520, 546
BstKTI	GATC	5 cut(s)	142, 146, 283, 303, 501
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	5 cut(s)	139, 143, 280, 300, 498
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 182, 361, 410
BstNI	CCWGG	2 cut(s)	126, 336
BstPI	GGTNACC	1 cut(s)	272
BstSCI	CCNGG	2 cut(s)	124, 334
BstV1I	GCAGC	4 cut(s)	80, 163, 185, 517
BstX2I	RGATCY	2 cut(s)	300, 498
BstYI	RGATCY	2 cut(s)	300, 498
Bsu15I	ATCGAT	1 cut(s)	142
BsuRI	GGCC	3 cut(s)	94, 312, 452
BsuTUI	ATCGAT	1 cut(s)	142
Cac8I	GCNNGC	3 cut(s)	171, 314, 575
CfoI	GCGC	2 cut(s)	520, 546
Cfr10I	RCCGGY	2 cut(s)	269, 540
Cfr13I	GGNCC	2 cut(s)	92, 450
ClaI	ATCGAT	1 cut(s)	142
Csp6I	GTAC	3 cut(s)	328, 385, 396
CspAI	ACCGGT	1 cut(s)	269
CviAII	CATG	2 cut(s)	447, 484
CviQI	GTAC	3 cut(s)	328, 385, 396
DdeI	CTNAG	4 cut(s)	72, 134, 408, 414
DpnI	GATC	5 cut(s)	141, 145, 282, 302, 500
DpnII	GATC	5 cut(s)	139, 143, 280, 300, 498
Eam1104I	CTCTTC	2 cut(s)	42, 465
EarI	CTCTTC	2 cut(s)	42, 465
Eco91I	GGTNACC	1 cut(s)	272
EcoO65I	GGTNACC	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	124, 334
FaeI	CATG	2 cut(s)	450, 487
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	2 cut(s)	446, 483
FauI	CCCGC	2 cut(s)	156, 578
FauNDI	CATATG	1 cut(s)	157
Fnu4HI	GCNGC	5 cut(s)	69, 152, 174, 453, 531
Fsp4HI	GCNGC	5 cut(s)	69, 152, 174, 453, 531
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	2 cut(s)	519, 545
GluI	GCNGC	5 cut(s)	69, 152, 174, 453, 531
GsuI	CTGGAG	1 cut(s)	270
HaeII	RGCGCY	2 cut(s)	521, 547
HaeIII	GGCC	3 cut(s)	94, 312, 452
HapII	CCGG	2 cut(s)	270, 541
HhaI	GCGC	2 cut(s)	520, 546
Hin1II	CATG	2 cut(s)	450, 487
Hin6I	GCGC	2 cut(s)	518, 544
HinP1I	GCGC	2 cut(s)	518, 544
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HinfI	GANTC	2 cut(s)	214, 489
HpaII	CCGG	2 cut(s)	270, 541
HphI	GGTGA	2 cut(s)	119, 259
Hpy166II	GTNNAC	3 cut(s)	117, 131, 595
Hpy188I	TCNGA	4 cut(s)	246, 300, 305, 417
Hpy188III	TCNNGA	3 cut(s)	206, 442, 584
Hpy8I	GTNNAC	3 cut(s)	117, 131, 595
Hpy99I	CGWCG	2 cut(s)	104, 590
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	2 cut(s)	20, 278
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	4 cut(s)	161, 316, 404, 533
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 182, 361, 410
HpyF3I	CTNAG	4 cut(s)	72, 134, 408, 414
HpySE526I	ACGT	1 cut(s)	588
Hsp92II	CATG	2 cut(s)	450, 487
HspAI	GCGC	2 cut(s)	518, 544
Kzo9I	GATC	5 cut(s)	139, 143, 280, 300, 498
LguI	GCTCTTC	1 cut(s)	465
LmnI	GCTCC	2 cut(s)	194, 341
Lsp1109I	GCAGC	4 cut(s)	80, 163, 185, 517
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	3 cut(s)	82, 233, 272
MalI	GATC	5 cut(s)	141, 145, 282, 302, 500
MboI	GATC	5 cut(s)	139, 143, 280, 300, 498
MboII	GAAGA	3 cut(s)	59, 401, 482
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	2 cut(s)	300, 498
MluCI	AATT	2 cut(s)	247, 345
MlyI	GAGTC	1 cut(s)	223
MnlI	CCTC	6 cut(s)	43, 73, 97, 213, 294, 403
MseI	TTAA	2 cut(s)	8, 366
MspA1I	CMGCKG	2 cut(s)	71, 290
MspI	CCGG	2 cut(s)	270, 541
MspR9I	CCNGG	2 cut(s)	126, 336
MunI	CAATTG	1 cut(s)	345
MvaI	CCWGG	2 cut(s)	126, 336
MwoI	GCNNNNNNNGC	4 cut(s)	68, 182, 361, 410
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	5 cut(s)	139, 143, 280, 300, 498
NlaIII	CATG	2 cut(s)	450, 487
NmuCI	GTSAC	1 cut(s)	233
PciSI	GCTCTTC	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	489
PflFI	GACNNNGTC	1 cut(s)	590
PinAI	ACCGGT	1 cut(s)	269
PkrI	GCNGC	5 cut(s)	70, 153, 175, 454, 532
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	124, 334
PspEI	GGTNACC	1 cut(s)	272
PspGI	CCWGG	2 cut(s)	124, 334
PspPI	GGNCC	2 cut(s)	92, 450
PsuI	RGATCY	2 cut(s)	300, 498
PsyI	GACNNNGTC	1 cut(s)	590
PvuII	CAGCTG	2 cut(s)	71, 290
RsaI	GTAC	3 cut(s)	329, 386, 397
RsaNI	GTAC	3 cut(s)	328, 385, 396
SapI	GCTCTTC	1 cut(s)	465
SaqAI	TTAA	2 cut(s)	8, 366
SatI	GCNGC	5 cut(s)	69, 152, 174, 453, 531
Sau3AI	GATC	5 cut(s)	139, 143, 280, 300, 498
Sau96I	GGNCC	2 cut(s)	92, 450
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	2 cut(s)	126, 336
SetI	ASST	8 cut(s)	73, 84, 178, 182, 292, 532, 579, 591
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	2 cut(s)	247, 345
SsiI	CCGC	3 cut(s)	149, 453, 571
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	124, 334
TaaI	ACNGT	2 cut(s)	20, 278
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	2 cut(s)	142, 585
TasI	AATT	2 cut(s)	247, 345
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	1 cut(s)	489
Tru1I	TTAA	2 cut(s)	8, 366
Tru9I	TTAA	2 cut(s)	8, 366
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	4 cut(s)	68, 151, 173, 530
Tsp45I	GTSAC	1 cut(s)	233
TspGWI	ACGGA	1 cut(s)	315
Tth111I	GACNNNGTC	1 cut(s)	590
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.