Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010327

Physical Location & Seq

Genomic Coordinates Forward (+)

1380478 .. 1383346

Gene Structure 2869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00077940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCTGGAGGAGCGATCCACCAGTTATTGAGGAGGAAACTTCAGTTTCAATCTACCTCCCCGTCCTTTTTGTCTTCCCTAGCATCTAAGAAAGATGATGCTGGGACGAAGTCCCTCAGAGGATTTGCTTTACTTGGAGCAGGTGTTTCAGGACTATTAGGTTTTGCAACTGTAGCATCTGCTGATGAGGCTGAGCATGGATTAGAGTGCCCAAACTACCCGTGGCCTCACCAGGGAATCCTTAGCTCATACGATCATGCTTCGATTCGCCGTGGTCATCAGGTTTACACACAAGTCTGTGCATCCTGCCATTCCATGTCTTTAGTATCTTACCGTGACTTGGTGGGTGTTGCATATACCGAAGAGGAGACAAAGGCTATGGCCGCTGAGATTGAGGTAACTGATGGCCCTAATGATGAGGGTGAGATGTTCACTCGCCCCGGTAAACTCAGTGATCGATTCCCTCAGCCGTATGCAAATGAGCAGGCAGCTAGGTTTGCCAATGGTGGGGCATATCCTCCCGATCTAAGTCTTATCACAAAGGCTCGTCACAATGGTCAGAATTATGTATTCGCCCTTCTCACAGGTTACCGTGATCCTCCAGCTGGTGTTCAGATCAGAGACGGTCTGCACTACAATCCTTACTTTCCTGGGGGAGCAATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTACTCCTGCTACTGAGGCTCAGATGGGAAAAGATATTGTGTCATTCTTGTCGTGGGCTGCAGAACCAGAAATGGAAGAGAGGAAACTGATGGGATTCAAATGGATTTTTGTTCTCTCATTGGCACTACTTCAAGCTGCTTATTACCGACGATTGAAGTGGTCAGTTTTGAAGTCTCGCAAGCTGGTTCTGGATGTTGTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Cytochrom_C1

Protein Analysis

304

Amino Acids

33.34

Weight (kDa)

6.25

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cytochrom_C1	PF02167	75 - 291	2e-100	Cytochrome C1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27240 AT5G40810 AT5G40810
fragaria_vesca	FvH4_6g52970 FvH4_6g52970
malus_domestica	MD09G1015600.v1.1 MD17G1016000.v1.1
prunus_persica	Prupe.3G301700_v2.0.a1 Prupe.3G301700_v2.0.a1
pyrus_communis	pycom111g01270 pycom17g01290
rosa_chinensis	RchiOBHm_Chr2g0174681
rosa_laevigata	RLG00000022285
rosa_roxburghii	Rroxscaffold_2G00077940
rosa_rugosa	Rorug02G0578700 Rorug02G0578700
rosa_samantha	Rh2AG660000 Rh2BG670900 Rh2CG634100 Rh2DG684500
rosa_wichuraiana	Rw2G054060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	131
AciI	CCGC	1 cut(s)	384
AclWI	GGATC	2 cut(s)	10, 590
AcoI	YGGCCR	1 cut(s)	381
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	1 cut(s)	712
AfiI	CCNNNNNNNGG	4 cut(s)	233, 340, 507, 605
AgsI	TTSAA	5 cut(s)	50, 808, 842, 865, 880
AjnI	CCWGG	2 cut(s)	231, 649
AluBI	AGCT	5 cut(s)	246, 491, 605, 845, 892
AluI	AGCT	5 cut(s)	246, 491, 605, 845, 892
Alw26I	GTCTC	3 cut(s)	362, 615, 888
AlwI	GGATC	2 cut(s)	10, 590
AoxI	GGCC	3 cut(s)	224, 381, 406
ApeKI	GCWGC	3 cut(s)	488, 767, 845
AspS9I	GGNCC	1 cut(s)	407
AsuC2I	CCSGG	1 cut(s)	441
AsuHPI	GGTGA	2 cut(s)	221, 434
BaeGI	GKGCMC	1 cut(s)	212
BarI	GAAGNNNNNNTAC	2 cut(s)	561, 593
BbsI	GAAGAC	1 cut(s)	66
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	3 cut(s)	500, 754, 832
BccI	CCATC	5 cut(s)	398, 680, 701, 727, 793
BceAI	ACGGC	2 cut(s)	255, 454
BciT130I	CCWGG	2 cut(s)	233, 651
BcnI	CCSGG	1 cut(s)	441
BcoDI	GTCTC	3 cut(s)	362, 615, 888
BfaI	CTAG	3 cut(s)	80, 492, 913
BfmI	CTRYAG	2 cut(s)	171, 768
BfuAI	ACCTGC	1 cut(s)	131
BisI	GCNGC	4 cut(s)	384, 489, 768, 846
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	4 cut(s)	385, 490, 769, 847
Bme1390I	CCNGG	3 cut(s)	233, 441, 651
BmgT120I	GGNCC	1 cut(s)	407
BmrFI	CCNGG	3 cut(s)	233, 441, 651
BmsI	GCATC	4 cut(s)	88, 92, 185, 311
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	2 cut(s)	27, 585
Bpu10I	CCTNAGC	2 cut(s)	242, 465
Bpu1102I	GCTNAGC	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	441
Bsa29I	ATCGAT	1 cut(s)	457
BsaJI	CCNNGG	5 cut(s)	221, 232, 271, 439, 650
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	4 cut(s)	233, 340, 507, 605
Bse1I	ACTGG	1 cut(s)	22
BseBI	CCWGG	2 cut(s)	233, 651
BseCI	ATCGAT	1 cut(s)	457
BseDI	CCNNGG	5 cut(s)	221, 232, 271, 439, 650
BseGI	GGATG	2 cut(s)	302, 907
BseLI	CCNNNNNNNGG	4 cut(s)	233, 340, 507, 605
BseMII	CTCAG	7 cut(s)	130, 183, 378, 463, 479, 714, 743
BseNI	ACTGG	1 cut(s)	22
BseRI	GAGGAG	3 cut(s)	24, 46, 380
BseSI	GKGCMC	1 cut(s)	212
BseXI	GCAGC	3 cut(s)	500, 754, 832
BseYI	CCCAGC	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	614
BshFI	GGCC	3 cut(s)	226, 383, 408
BshVI	ATCGAT	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	2 cut(s)	97, 118
BslI	CCNNNNNNNGG	4 cut(s)	233, 340, 507, 605
BsmAI	GTCTC	3 cut(s)	362, 615, 888
BsmBI	CGTCTC	1 cut(s)	615
BsmFI	GGGAC	2 cut(s)	97, 118
BsnI	GGCC	3 cut(s)	226, 383, 408
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	6 cut(s)	15, 253, 454, 523, 595, 615
Bsp1720I	GCTNAGC	1 cut(s)	192
BspACI	CCGC	1 cut(s)	384
BspANI	GGCC	3 cut(s)	226, 383, 408
BspCNI	CTCAG	7 cut(s)	129, 184, 379, 462, 478, 715, 742
BspDI	ATCGAT	1 cut(s)	457
BspMAI	CTGCAG	1 cut(s)	772
BspMI	ACCTGC	1 cut(s)	131
BspPI	GGATC	2 cut(s)	10, 590
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	5 cut(s)	221, 232, 271, 439, 650
BssMI	GATC	6 cut(s)	15, 253, 454, 523, 595, 615
Bst2UI	CCWGG	2 cut(s)	233, 651
Bst4CI	ACNGT	4 cut(s)	172, 335, 593, 626
Bst6I	CTCTTC	2 cut(s)	357, 780
BstC8I	GCNNGC	2 cut(s)	486, 890
BstDSI	CCRYGG	2 cut(s)	221, 271
BstEII	GGTNACC	1 cut(s)	587
BstF5I	GGATG	2 cut(s)	302, 907
BstKTI	GATC	6 cut(s)	18, 256, 457, 526, 598, 618
BstMAI	GTCTC	3 cut(s)	362, 615, 888
BstMBI	GATC	6 cut(s)	15, 253, 454, 523, 595, 615
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 173, 188, 383, 497, 676, 725
BstNI	CCWGG	2 cut(s)	233, 651
BstPI	GGTNACC	1 cut(s)	587
BstSCI	CCNGG	3 cut(s)	231, 439, 649
BstSFI	CTRYAG	2 cut(s)	171, 768
BstSLI	GKGCMC	1 cut(s)	212
BstV1I	GCAGC	3 cut(s)	500, 754, 832
BstV2I	GAAGAC	1 cut(s)	66
Bsu15I	ATCGAT	1 cut(s)	457
BsuRI	GGCC	3 cut(s)	226, 383, 408
BsuTUI	ATCGAT	1 cut(s)	457
BtgI	CCRYGG	2 cut(s)	221, 271
BtsCI	GGATG	2 cut(s)	302, 907
BtsIMutI	CAGTG	1 cut(s)	457
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	2 cut(s)	486, 890
Cfr13I	GGNCC	1 cut(s)	407
ClaI	ATCGAT	1 cut(s)	457
Csp6I	GTAC	1 cut(s)	711
CviAII	CATG	4 cut(s)	197, 257, 316, 667
CviQI	GTAC	1 cut(s)	711
DpnI	GATC	6 cut(s)	17, 255, 456, 525, 597, 617
DpnII	GATC	6 cut(s)	15, 253, 454, 523, 595, 615
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	2 cut(s)	357, 780
EarI	CTCTTC	2 cut(s)	357, 780
Eco57I	CTGAAG	1 cut(s)	26
Eco91I	GGTNACC	1 cut(s)	587
EcoO65I	GGTNACC	1 cut(s)	587
EcoRII	CCWGG	2 cut(s)	231, 649
Esp3I	CGTCTC	1 cut(s)	615
FaeI	CATG	4 cut(s)	200, 260, 319, 670
FaqI	GGGAC	2 cut(s)	97, 118
FatI	CATG	4 cut(s)	196, 256, 315, 666
Fnu4HI	GCNGC	4 cut(s)	384, 489, 768, 846
FokI	GGATG	1 cut(s)	289
Fsp4HI	GCNGC	4 cut(s)	384, 489, 768, 846
FspBI	CTAG	3 cut(s)	80, 492, 913
GluI	GCNGC	4 cut(s)	384, 489, 768, 846
GsaI	CCCAGC	1 cut(s)	105
GsuI	CTGGAG	2 cut(s)	27, 585
HaeIII	GGCC	3 cut(s)	226, 383, 408
HapII	CCGG	1 cut(s)	441
Hin1II	CATG	4 cut(s)	200, 260, 319, 670
HinfI	GANTC	4 cut(s)	237, 265, 459, 804
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	2 cut(s)	221, 434
Hpy166II	GTNNAC	4 cut(s)	286, 432, 446, 910
Hpy188I	TCNGA	5 cut(s)	119, 561, 615, 620, 732
Hpy188III	TCNNGA	3 cut(s)	150, 521, 899
Hpy8I	GTNNAC	4 cut(s)	286, 432, 446, 910
Hpy99I	CGWCG	1 cut(s)	861
HpyAV	CCTTC	1 cut(s)	587
HpyCH4III	ACNGT	4 cut(s)	172, 335, 593, 626
HpyCH4V	TGCA	6 cut(s)	167, 302, 353, 476, 631, 770
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 173, 188, 383, 497, 676, 725
Hsp92II	CATG	4 cut(s)	200, 260, 319, 670
Kzo9I	GATC	6 cut(s)	15, 253, 454, 523, 595, 615
LmnI	GCTCC	3 cut(s)	11, 137, 656
Lsp1109I	GCAGC	3 cut(s)	500, 754, 832
LweI	GCATC	4 cut(s)	88, 92, 185, 311
MaeI	CTAG	3 cut(s)	80, 492, 913
MaeIII	GTNAC	4 cut(s)	335, 397, 548, 587
MalI	GATC	6 cut(s)	17, 255, 456, 525, 597, 617
MboI	GATC	6 cut(s)	15, 253, 454, 523, 595, 615
MboII	GAAGA	4 cut(s)	66, 374, 716, 797
MfeI	CAATTG	1 cut(s)	660
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	2 cut(s)	562, 660
MseI	TTAA	1 cut(s)	681
MspA1I	CMGCKG	2 cut(s)	386, 605
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	3 cut(s)	233, 441, 651
MunI	CAATTG	1 cut(s)	660
MvaI	CCWGG	2 cut(s)	233, 651
MwoI	GCNNNNNNNGC	7 cut(s)	11, 173, 188, 383, 497, 676, 725
NciI	CCSGG	1 cut(s)	441
NdeII	GATC	6 cut(s)	15, 253, 454, 523, 595, 615
NlaIII	CATG	4 cut(s)	200, 260, 319, 670
NmuCI	GTSAC	2 cut(s)	335, 548
PaqCI	CACCTGC	1 cut(s)	131
PfeI	GAWTC	4 cut(s)	237, 265, 459, 804
PflFI	GACNNNGTC	1 cut(s)	109
PkrI	GCNGC	4 cut(s)	385, 490, 769, 847
Psp6I	CCWGG	2 cut(s)	231, 649
PspEI	GGTNACC	1 cut(s)	587
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	2 cut(s)	231, 649
PspPI	GGNCC	1 cut(s)	407
PstI	CTGCAG	1 cut(s)	772
PsyI	GACNNNGTC	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	605
RsaI	GTAC	1 cut(s)	712
RsaNI	GTAC	1 cut(s)	711
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	4 cut(s)	384, 489, 768, 846
Sau3AI	GATC	6 cut(s)	15, 253, 454, 523, 595, 615
Sau96I	GGNCC	1 cut(s)	407
ScrFI	CCNGG	3 cut(s)	233, 441, 651
SduI	GDGCHC	1 cut(s)	212
SfaNI	GCATC	4 cut(s)	88, 92, 185, 311
SfcI	CTRYAG	2 cut(s)	171, 768
Sse9I	AATT	2 cut(s)	562, 660
SsiI	CCGC	1 cut(s)	384
SspMI	CTAG	3 cut(s)	80, 492, 913
StyD4I	CCNGG	3 cut(s)	231, 439, 649
TaaI	ACNGT	4 cut(s)	172, 335, 593, 626
TaqI	TCGA	2 cut(s)	263, 457
TasI	AATT	2 cut(s)	562, 660
TauI	GCSGC	1 cut(s)	386
TfiI	GAWTC	4 cut(s)	237, 265, 459, 804
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	2 cut(s)	335, 548
TseI	GCWGC	3 cut(s)	488, 767, 845
Tsp45I	GTSAC	2 cut(s)	335, 548
TspDTI	ATGAA	1 cut(s)	717
TspRI	CASTG	1 cut(s)	457
Tth111I	GACNNNGTC	1 cut(s)	109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	219
XspI	CTAG	3 cut(s)	80, 492, 913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.