FvH4_6g52970

heme protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010327
Physical Location & Seq
Reverse (-)
38890957 .. 38894174
3218 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52970.t2

Sequence Viewer

Length: 924 bp
ATGGCTGGAGGAGTGATCCACCAGTTATTGAGGAGGAAACTTCAGTTTCAATCTACGGCTCCTTCCTTTTTGTCATCCCTGGTGTCTAAGAAAGATGATGCTGGGTCTGCTGGGACAAAGTCCCTCAGAGCATTTGCACTGCTTGGAGCTGGTGTTTCCGGACTACTAGGTTTTGCAACTGTAGCATCTGCTGATGAGGCTGAGCATGGATTGGAGTGCCCAAACTACCCGTGGCCTCACCAAGGAATCCTTAGCTCATATGATCATGCTTCGATTCGCCGTGGTCATCAGGTTTACACCCAAGTCTGTGCATCCTGCCATTCAATGTCTTTAATATCTTACCGTGACTTGGTGGGTGTTGCATACACCGAAGAGGAGACAAAGGCTATGGCCGCTGAGATTGAGGTAACTGATGGCCCTAATGATGAGGGTGAGATGTTCACTCGCCCTGGTAAACTCAGTGATCGATTCCCTCAGCCATATTCCAATGAGCAGGCAGCTAGGTTTGCCAATGGCGGGGCCTATCCTCCAGATCTAAGTCTTATCACAAAGGCTCGTCATAATGGTCAGAACTATGTATTCGCCCTTCTCACAGGTTACCGTGACCCTCCAGCTGGTGTTCAGATCAGAGATGGTCTGCACTACAATCCTTACTTTCCTGGGGGAGCAATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTACTCCTGCTACTGAGGCTCAGATGGGAAAAGATATTGTGTCATTCTTGTCATGGGCTGCAGAACCAGAAATGGAAGAGAGGAAACTGATGGGATTCAAATGGATTTTTGTTCTCTCATTGGCGCTACTTCAAGCTGGTTATTACCGACGATTGAAGTGGTCAGTTCTGAAGTCCCGCAAGCTGGTTCTGGATGTTGTGAACTAG

Protein Analysis

308

Amino Acids

33.63

Weight (kDa)

6.25

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_C1 PF02167 78 - 294 1.3e-99 Cytochrome C1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 158
AciI CCGC 3 cut(s) 393, 516, 895
AclWI GGATC 1 cut(s) 10
AcoI YGGCCR 1 cut(s) 390
AcuI CTGAAG 2 cut(s) 26, 908
AfaI GTAC 1 cut(s) 721
AfiI CCNNNNNNNGG 5 cut(s) 242, 349, 516, 614, 901
AgsI TTSAA 5 cut(s) 50, 324, 817, 851, 874
AjnI CCWGG 3 cut(s) 78, 448, 658
AluBI AGCT 6 cut(s) 149, 255, 500, 614, 854, 901
AluI AGCT 6 cut(s) 149, 255, 500, 614, 854, 901
Alw26I GTCTC 1 cut(s) 371
AlwI GGATC 1 cut(s) 10
Aor13HI TCCGGA 1 cut(s) 158
AoxI GGCC 4 cut(s) 233, 390, 415, 519
ApeKI GCWGC 2 cut(s) 497, 776
AspLEI GCGC 1 cut(s) 844
AspS9I GGNCC 2 cut(s) 416, 519
AsuHPI GGTGA 2 cut(s) 230, 443
BaeGI GKGCMC 1 cut(s) 221
BarI GAAGNNNNNNTAC 2 cut(s) 570, 602
BbvCI CCTCAGC 1 cut(s) 474
BbvI GCAGC 2 cut(s) 509, 763
BccI CCATC 6 cut(s) 407, 626, 689, 710, 736, 802
BceAI ACGGC 2 cut(s) 72, 264
BciT130I CCWGG 3 cut(s) 80, 450, 660
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 3 cut(s) 167, 501, 922
BfmI CTRYAG 2 cut(s) 180, 777
BfoI RGCGCY 1 cut(s) 845
BglII AGATCT 1 cut(s) 532
BisI GCNGC 3 cut(s) 393, 498, 777
BlpI GCTNAGC 1 cut(s) 201
BlsI GCNGC 3 cut(s) 394, 499, 778
Bme1390I CCNGG 3 cut(s) 80, 450, 660
BmgT120I GGNCC 2 cut(s) 416, 519
BmiI GGNNCC 2 cut(s) 60, 520
BmrFI CCNGG 3 cut(s) 80, 450, 660
BmsI GCATC 3 cut(s) 88, 194, 320
BpmI CTGGAG 3 cut(s) 27, 513, 594
Bpu10I CCTNAGC 2 cut(s) 251, 474
Bpu1102I GCTNAGC 1 cut(s) 201
Bsa29I ATCGAT 1 cut(s) 466
BsaJI CCNNGG 6 cut(s) 78, 230, 241, 280, 448, 659
BsaWI WCCGGW 1 cut(s) 158
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 5 cut(s) 242, 349, 516, 614, 901
Bse1I ACTGG 1 cut(s) 22
BseAI TCCGGA 1 cut(s) 158
BseBI CCWGG 3 cut(s) 80, 450, 660
BseCI ATCGAT 1 cut(s) 466
BseDI CCNNGG 6 cut(s) 78, 230, 241, 280, 448, 659
BseGI GGATG 3 cut(s) 74, 311, 916
BseLI CCNNNNNNNGG 5 cut(s) 242, 349, 516, 614, 901
BseMII CTCAG 7 cut(s) 139, 192, 387, 472, 488, 723, 752
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 3 cut(s) 24, 46, 389
BseSI GKGCMC 1 cut(s) 221
BseXI GCAGC 2 cut(s) 509, 763
BseYI CCCAGC 2 cut(s) 101, 110
BsgI GTGCAG 1 cut(s) 623
BshFI GGCC 4 cut(s) 235, 392, 417, 521
BshVI ATCGAT 1 cut(s) 466
BsiSI CCGG 1 cut(s) 159
BslFI GGGAC 3 cut(s) 106, 127, 877
BslI CCNNNNNNNGG 5 cut(s) 242, 349, 516, 614, 901
BsmAI GTCTC 1 cut(s) 371
BsmFI GGGAC 3 cut(s) 106, 127, 877
BsnI GGCC 4 cut(s) 235, 392, 417, 521
Bsp1286I GDGCHC 1 cut(s) 221
Bsp13I TCCGGA 1 cut(s) 158
Bsp143I GATC 5 cut(s) 15, 262, 463, 532, 624
Bsp1720I GCTNAGC 1 cut(s) 201
BspACI CCGC 3 cut(s) 393, 516, 895
BspANI GGCC 4 cut(s) 235, 392, 417, 521
BspCNI CTCAG 7 cut(s) 138, 193, 388, 471, 487, 724, 751
BspDI ATCGAT 1 cut(s) 466
BspEI TCCGGA 1 cut(s) 158
BspLI GGNNCC 2 cut(s) 60, 520
BspMAI CTGCAG 1 cut(s) 781
BspPI GGATC 1 cut(s) 10
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 6 cut(s) 78, 230, 241, 280, 448, 659
BssMI GATC 5 cut(s) 15, 262, 463, 532, 624
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 3 cut(s) 80, 450, 660
Bst4CI ACNGT 3 cut(s) 181, 344, 602
Bst6I CTCTTC 2 cut(s) 366, 789
BstC8I GCNNGC 2 cut(s) 495, 899
BstDSI CCRYGG 2 cut(s) 230, 280
BstEII GGTNACC 1 cut(s) 596
BstENI CCTNNNNNAGG 1 cut(s) 240
BstF5I GGATG 3 cut(s) 74, 311, 916
BstH2I RGCGCY 1 cut(s) 845
BstHHI GCGC 1 cut(s) 844
BstKTI GATC 5 cut(s) 18, 265, 466, 535, 627
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 5 cut(s) 15, 262, 463, 532, 624
BstMWI GCNNNNNNNGC 7 cut(s) 107, 182, 197, 392, 506, 685, 734
BstNI CCWGG 3 cut(s) 80, 450, 660
BstPI GGTNACC 1 cut(s) 596
BstSCI CCNGG 3 cut(s) 78, 448, 658
BstSFI CTRYAG 2 cut(s) 180, 777
BstSLI GKGCMC 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 509, 763
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
Bsu15I ATCGAT 1 cut(s) 466
BsuRI GGCC 4 cut(s) 235, 392, 417, 521
BsuTUI ATCGAT 1 cut(s) 466
BtgI CCRYGG 2 cut(s) 230, 280
BtsCI GGATG 3 cut(s) 74, 311, 916
BtsI GCAGTG 1 cut(s) 137
BtsIMutI CAGTG 2 cut(s) 137, 466
Cac8I GCNNGC 2 cut(s) 495, 899
CfoI GCGC 1 cut(s) 844
Cfr13I GGNCC 2 cut(s) 416, 519
ClaI ATCGAT 1 cut(s) 466
Csp6I GTAC 1 cut(s) 720
CviAII CATG 4 cut(s) 206, 266, 676, 771
CviQI GTAC 1 cut(s) 720
DpnI GATC 5 cut(s) 17, 264, 465, 534, 626
DpnII GATC 5 cut(s) 15, 262, 463, 532, 624
EaeI YGGCCR 1 cut(s) 390
Eam1104I CTCTTC 2 cut(s) 366, 789
EarI CTCTTC 2 cut(s) 366, 789
Eco130I CCWWGG 1 cut(s) 241
Eco57I CTGAAG 2 cut(s) 26, 908
Eco91I GGTNACC 1 cut(s) 596
EcoNI CCTNNNNNAGG 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 519
EcoO65I GGTNACC 1 cut(s) 596
EcoRII CCWGG 3 cut(s) 78, 448, 658
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 4 cut(s) 209, 269, 679, 774
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FaqI GGGAC 3 cut(s) 106, 127, 877
FatI CATG 4 cut(s) 205, 265, 675, 770
FauI CCCGC 2 cut(s) 509, 902
FauNDI CATATG 1 cut(s) 259
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 3 cut(s) 393, 498, 777
FokI GGATG 2 cut(s) 61, 298
Fsp4HI GCNGC 3 cut(s) 393, 498, 777
FspBI CTAG 3 cut(s) 167, 501, 922
GlaI GCGC 1 cut(s) 843
GluI GCNGC 3 cut(s) 393, 498, 777
GsaI CCCAGC 2 cut(s) 105, 114
GsuI CTGGAG 3 cut(s) 27, 513, 594
HaeII RGCGCY 1 cut(s) 845
HaeIII GGCC 4 cut(s) 235, 392, 417, 521
HapII CCGG 1 cut(s) 159
HhaI GCGC 1 cut(s) 844
Hin1II CATG 4 cut(s) 209, 269, 679, 774
Hin6I GCGC 1 cut(s) 842
HinP1I GCGC 1 cut(s) 842
HinfI GANTC 4 cut(s) 246, 274, 468, 813
HpaII CCGG 1 cut(s) 159
HphI GGTGA 2 cut(s) 230, 443
Hpy166II GTNNAC 4 cut(s) 295, 441, 455, 919
Hpy188I TCNGA 6 cut(s) 128, 570, 624, 629, 741, 888
Hpy188III TCNNGA 3 cut(s) 159, 530, 908
Hpy8I GTNNAC 4 cut(s) 295, 441, 455, 919
Hpy99I CGWCG 1 cut(s) 870
HpyAV CCTTC 2 cut(s) 72, 596
HpyCH4III ACNGT 3 cut(s) 181, 344, 602
HpyCH4V TGCA 6 cut(s) 137, 176, 311, 362, 640, 779
HpyF10VI GCNNNNNNNGC 7 cut(s) 107, 182, 197, 392, 506, 685, 734
Hsp92II CATG 4 cut(s) 209, 269, 679, 774
HspAI GCGC 1 cut(s) 842
Kpn2I TCCGGA 1 cut(s) 158
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 5 cut(s) 15, 262, 463, 532, 624
LmnI GCTCC 3 cut(s) 64, 146, 665
Lsp1109I GCAGC 2 cut(s) 509, 763
LweI GCATC 3 cut(s) 88, 194, 320
MaeI CTAG 3 cut(s) 167, 501, 922
MaeIII GTNAC 4 cut(s) 344, 406, 596, 602
MalI GATC 5 cut(s) 17, 264, 465, 534, 626
MboI GATC 5 cut(s) 15, 262, 463, 532, 624
MboII GAAGA 3 cut(s) 383, 725, 806
MfeI CAATTG 1 cut(s) 669
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 1 cut(s) 221
MluCI AATT 1 cut(s) 669
MroI TCCGGA 1 cut(s) 158
MseI TTAA 2 cut(s) 332, 690
MspA1I CMGCKG 2 cut(s) 395, 614
MspI CCGG 1 cut(s) 159
MspR9I CCNGG 3 cut(s) 80, 450, 660
MunI CAATTG 1 cut(s) 669
MvaI CCWGG 3 cut(s) 80, 450, 660
MwoI GCNNNNNNNGC 7 cut(s) 107, 182, 197, 392, 506, 685, 734
NdeI CATATG 1 cut(s) 259
NdeII GATC 5 cut(s) 15, 262, 463, 532, 624
NlaIII CATG 4 cut(s) 209, 269, 679, 774
NlaIV GGNNCC 2 cut(s) 60, 520
NmuCI GTSAC 2 cut(s) 344, 602
PfeI GAWTC 4 cut(s) 246, 274, 468, 813
PflFI GACNNNGTC 1 cut(s) 118
PkrI GCNGC 3 cut(s) 394, 499, 778
Psp6I CCWGG 3 cut(s) 78, 448, 658
PspEI GGTNACC 1 cut(s) 596
PspFI CCCAGC 2 cut(s) 101, 110
PspGI CCWGG 3 cut(s) 78, 448, 658
PspN4I GGNNCC 2 cut(s) 60, 520
PspPI GGNCC 2 cut(s) 416, 519
PstI CTGCAG 1 cut(s) 781
PsuI RGATCY 1 cut(s) 532
PsyI GACNNNGTC 1 cut(s) 118
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 1 cut(s) 721
RsaNI GTAC 1 cut(s) 720
SaqAI TTAA 2 cut(s) 332, 690
SatI GCNGC 3 cut(s) 393, 498, 777
Sau3AI GATC 5 cut(s) 15, 262, 463, 532, 624
Sau96I GGNCC 2 cut(s) 416, 519
ScrFI CCNGG 3 cut(s) 80, 450, 660
SduI GDGCHC 1 cut(s) 221
SfaNI GCATC 3 cut(s) 88, 194, 320
SfcI CTRYAG 2 cut(s) 180, 777
Sse9I AATT 1 cut(s) 669
SsiI CCGC 3 cut(s) 393, 516, 895
SspMI CTAG 3 cut(s) 167, 501, 922
StyD4I CCNGG 3 cut(s) 78, 448, 658
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 3 cut(s) 181, 344, 602
TaqI TCGA 2 cut(s) 272, 466
TasI AATT 1 cut(s) 669
TauI GCSGC 1 cut(s) 395
TfiI GAWTC 4 cut(s) 246, 274, 468, 813
Tru1I TTAA 2 cut(s) 332, 690
Tru9I TTAA 2 cut(s) 332, 690
TscAI CASTG 2 cut(s) 144, 466
TseFI GTSAC 2 cut(s) 344, 602
TseI GCWGC 2 cut(s) 497, 776
Tsp45I GTSAC 2 cut(s) 344, 602
TspDTI ATGAA 1 cut(s) 726
TspRI CASTG 2 cut(s) 144, 466
Tth111I GACNNNGTC 1 cut(s) 118
XagI CCTNNNNNAGG 1 cut(s) 240
XcmI CCANNNNNNNNNTGG 1 cut(s) 228
XspI CTAG 3 cut(s) 167, 501, 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.