AT5G40810

Cytochrome C1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010327
Physical Location & Seq
Forward (+)
16339863 .. 16342927
3065 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G40810.1

Sequence Viewer

Length: 924 bp
ATGGTTGGAGGAGGAGTTATCCGGCAGCTTCTTAGAAGGAAACTTCATTCCCAATCAGTCGCAACTCCGGTATTGTCATGGTTGTCTTCGAAGAAAGCGAATGAAGATGCTGGGTCTGCTGGTTTAAGAGCATTTGCTCTCATGGGTGCTGGTATTACCGGATTATTGAGTTTTTCTACTGTTGCATCTGCTGATGAGGCTGAACATGGTCTGGAGTGTCCTAACTACCCTTGGCCACATGAGGGCATTCTCAGCTCATATGACCATGCTTCGATCCGTCGTGGTCACCAAGTTTATCAGCAAGTTTGTGCGTCTTGCCATTCGATGTCTCTGATCTCATACCGAGACTTGGTGGGTGTTGCCTACACAGAGGAAGAGGCGAAGGCCATGGCAGCTGAAATCGAGGTTGTTGATGGACCAAATGATGAGGGTGAGATGTTCACCCGACCTGGTAAACTCAGTGATCGGCTTCCTGAACCATACTCAAATGAATCGGCTGCTAGGTTCGCCAATGGAGGAGCGTATCCACCGGATCTAAGTCTTGTAACTAAGGCACGTCACAATGGCCAAAATTATGTCTTTGCTCTGTTGACTGGTTATCGTGATCCTCCTGCTGGAATTTCGATCAGAGAGGGGCTACACTACAATCCTTATTTCCCTGGTGGAGCAATCGCTATGCCAAAAATGCTCAACGATGAAGCTGTGGAATATGAAGATGGAACTCCTGCAACAGAAGCACAGATGGGTAAAGATGTTGTATCCTTCTTGTCCTGGGCAGCTGAACCAGAGATGGAAGAGAGGAAATTGATGGGGTTCAAATGGATATTCTTACTGTCTTTGGCTCTGCTTCAAGCTGCGTATTACAGGAGACTGAAATGGTCAGTACTCAAATCCCGTAAGCTTGTTCTCGACGTTGTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005750 GO:0005773 GO:0005774 GO:0005886 GO:0006091 GO:0006119 GO:0006122 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009055 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015980 GO:0015985 GO:0015986 GO:0016020 GO:0016310 GO:0016491 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0034654 GO:0042773 GO:0042775 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045153 GO:0045155 GO:0045275 GO:0045333 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902600 GO:1990204 GO:1990542
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
Cytochrom_C1

Protein Analysis

307

Amino Acids

33.69

Weight (kDa)

5.8

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_C1 PF02167 78 - 294 8.1e-99 Cytochrome C1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 268, 540, 599
AcoI YGGCCR 2 cut(s) 233, 565
AcsI RAATTY 1 cut(s) 618
AfaI GTAC 1 cut(s) 885
AfiI CCNNNNNNNGG 3 cut(s) 242, 349, 614
AgsI TTSAA 2 cut(s) 817, 851
AjiI CACGTC 1 cut(s) 557
AjnI CCWGG 3 cut(s) 448, 658, 770
AluBI AGCT 7 cut(s) 28, 255, 395, 701, 779, 854, 901
AluI AGCT 7 cut(s) 28, 255, 395, 701, 779, 854, 901
Alw26I GTCTC 3 cut(s) 333, 339, 862
AlwI GGATC 3 cut(s) 268, 540, 599
AoxI GGCC 3 cut(s) 233, 384, 565
ApeKI GCWGC 5 cut(s) 25, 392, 497, 776, 854
ApoI RAATTY 1 cut(s) 618
AspS9I GGNCC 1 cut(s) 416
AsuHPI GGTGA 3 cut(s) 278, 433, 443
AsuII TTCGAA 1 cut(s) 89
AvaII GGWCC 1 cut(s) 416
BalI TGGCCA 2 cut(s) 235, 567
BbsI GAAGAC 1 cut(s) 78
BbvI GCAGC 5 cut(s) 37, 404, 484, 788, 841
BccI CCATC 5 cut(s) 407, 710, 736, 784, 802
BciT130I CCWGG 3 cut(s) 450, 660, 772
BciVI GTATCC 2 cut(s) 534, 769
BcoDI GTCTC 3 cut(s) 333, 339, 862
BfaI CTAG 1 cut(s) 501
BfuI GTATCC 2 cut(s) 534, 769
BisI GCNGC 5 cut(s) 26, 393, 498, 777, 855
BlsI GCNGC 5 cut(s) 27, 394, 499, 778, 856
BmcAI AGTACT 1 cut(s) 885
Bme1390I CCNGG 3 cut(s) 450, 660, 772
Bme18I GGWCC 1 cut(s) 416
BmgBI CACGTC 1 cut(s) 557
BmgT120I GGNCC 1 cut(s) 416
BmrFI CCNGG 3 cut(s) 450, 660, 772
BmsI GCATC 2 cut(s) 97, 194
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 233
Bpu14I TTCGAA 1 cut(s) 89
BsaJI CCNNGG 4 cut(s) 230, 387, 658, 771
BsaWI WCCGGW 3 cut(s) 67, 158, 529
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 3 cut(s) 242, 349, 614
Bse1I ACTGG 1 cut(s) 598
BseBI CCWGG 3 cut(s) 450, 660, 772
BseDI CCNNGG 4 cut(s) 230, 387, 658, 771
BseLI CCNNNNNNNGG 3 cut(s) 242, 349, 614
BseMII CTCAG 2 cut(s) 265, 472
BseNI ACTGG 1 cut(s) 598
BseRI GAGGAG 3 cut(s) 24, 27, 531
BseXI GCAGC 5 cut(s) 37, 404, 484, 788, 841
BseYI CCCAGC 1 cut(s) 110
BshFI GGCC 3 cut(s) 235, 386, 567
BsiSI CCGG 4 cut(s) 22, 68, 159, 530
BslI CCNNNNNNNGG 3 cut(s) 242, 349, 614
BsmAI GTCTC 3 cut(s) 333, 339, 862
BsmI GAATGC 1 cut(s) 246
BsnI GGCC 3 cut(s) 235, 386, 567
Bsp119I TTCGAA 1 cut(s) 89
Bsp143I GATC 6 cut(s) 273, 333, 463, 532, 604, 624
Bsp19I CCATGG 1 cut(s) 387
BspANI GGCC 3 cut(s) 235, 386, 567
BspCNI CTCAG 2 cut(s) 264, 471
BspPI GGATC 3 cut(s) 268, 540, 599
BspT104I TTCGAA 1 cut(s) 89
BsrI ACTGG 1 cut(s) 598
BssECI CCNNGG 4 cut(s) 230, 387, 658, 771
BssMI GATC 6 cut(s) 273, 333, 463, 532, 604, 624
BssT1I CCWWGG 2 cut(s) 230, 387
Bst2UI CCWGG 3 cut(s) 450, 660, 772
Bst4CI ACNGT 2 cut(s) 181, 834
Bst6I CTCTTC 2 cut(s) 369, 789
BstBI TTCGAA 1 cut(s) 89
BstDEI CTNAG 5 cut(s) 32, 251, 458, 536, 549
BstDSI CCRYGG 1 cut(s) 387
BstEII GGTNACC 1 cut(s) 284
BstKTI GATC 6 cut(s) 276, 336, 466, 535, 607, 627
BstMAI GTCTC 3 cut(s) 333, 339, 862
BstMBI GATC 6 cut(s) 273, 333, 463, 532, 604, 624
BstMWI GCNNNNNNNGC 7 cut(s) 116, 197, 252, 392, 506, 685, 734
BstNI CCWGG 3 cut(s) 450, 660, 772
BstPI GGTNACC 1 cut(s) 284
BstSCI CCNGG 3 cut(s) 448, 658, 770
BstV1I GCAGC 5 cut(s) 37, 404, 484, 788, 841
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
BsuI GTATCC 2 cut(s) 534, 769
BsuRI GGCC 3 cut(s) 235, 386, 567
BtgI CCRYGG 1 cut(s) 387
BtrI CACGTC 1 cut(s) 557
BtsIMutI CAGTG 1 cut(s) 466
Cfr13I GGNCC 1 cut(s) 416
CseI GACGC 1 cut(s) 300
CsiI ACCWGGT 1 cut(s) 448
Csp6I GTAC 1 cut(s) 884
CviAII CATG 6 cut(s) 78, 142, 206, 239, 266, 388
CviQI GTAC 1 cut(s) 884
DdeI CTNAG 5 cut(s) 32, 251, 458, 536, 549
DpnI GATC 6 cut(s) 275, 335, 465, 534, 606, 626
DpnII GATC 6 cut(s) 273, 333, 463, 532, 604, 624
EaeI YGGCCR 2 cut(s) 233, 565
Eam1104I CTCTTC 2 cut(s) 369, 789
EarI CTCTTC 2 cut(s) 369, 789
Eco130I CCWWGG 2 cut(s) 230, 387
Eco47I GGWCC 1 cut(s) 416
Eco91I GGTNACC 1 cut(s) 284
EcoO65I GGTNACC 1 cut(s) 284
EcoRII CCWGG 3 cut(s) 448, 658, 770
EcoT14I CCWWGG 2 cut(s) 230, 387
ErhI CCWWGG 2 cut(s) 230, 387
FaeI CATG 6 cut(s) 81, 145, 209, 242, 269, 391
FatI CATG 6 cut(s) 77, 141, 205, 238, 265, 387
FauNDI CATATG 1 cut(s) 259
Fnu4HI GCNGC 5 cut(s) 26, 393, 498, 777, 855
Fsp4HI GCNGC 5 cut(s) 26, 393, 498, 777, 855
FspBI CTAG 1 cut(s) 501
GluI GCNGC 5 cut(s) 26, 393, 498, 777, 855
GsaI CCCAGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 233
HaeIII GGCC 3 cut(s) 235, 386, 567
HapII CCGG 4 cut(s) 22, 68, 159, 530
HgaI GACGC 1 cut(s) 300
Hin1II CATG 6 cut(s) 81, 145, 209, 242, 269, 391
HincII GTYRAC 2 cut(s) 591, 919
HindII GTYRAC 2 cut(s) 591, 919
HindIII AAGCTT 1 cut(s) 899
HinfI GANTC 1 cut(s) 491
HpaI GTTAAC 1 cut(s) 919
HpaII CCGG 4 cut(s) 22, 68, 159, 530
HphI GGTGA 3 cut(s) 278, 433, 443
Hpy166II GTNNAC 4 cut(s) 441, 455, 591, 919
Hpy188I TCNGA 2 cut(s) 333, 629
Hpy188III TCNNGA 4 cut(s) 212, 473, 602, 908
Hpy8I GTNNAC 4 cut(s) 441, 455, 591, 919
Hpy99I CGWCG 2 cut(s) 282, 914
HpyAV CCTTC 3 cut(s) 30, 376, 772
HpyCH4III ACNGT 2 cut(s) 181, 834
HpyCH4IV ACGT 2 cut(s) 556, 912
HpyCH4V TGCA 2 cut(s) 185, 728
HpyF10VI GCNNNNNNNGC 7 cut(s) 116, 197, 252, 392, 506, 685, 734
HpyF3I CTNAG 5 cut(s) 32, 251, 458, 536, 549
HpySE526I ACGT 2 cut(s) 556, 912
Hsp92II CATG 6 cut(s) 81, 145, 209, 242, 269, 391
KspAI GTTAAC 1 cut(s) 919
Kzo9I GATC 6 cut(s) 273, 333, 463, 532, 604, 624
LmnI GCTCC 2 cut(s) 518, 665
Lsp1109I GCAGC 5 cut(s) 37, 404, 484, 788, 841
LweI GCATC 2 cut(s) 97, 194
MabI ACCWGGT 1 cut(s) 448
MaeI CTAG 1 cut(s) 501
MaeII ACGT 2 cut(s) 556, 912
MaeIII GTNAC 3 cut(s) 284, 544, 557
MalI GATC 6 cut(s) 275, 335, 465, 534, 606, 626
MboI GATC 6 cut(s) 273, 333, 463, 532, 604, 624
MboII GAAGA 6 cut(s) 78, 103, 116, 386, 725, 806
MflI RGATCY 1 cut(s) 532
MlsI TGGCCA 2 cut(s) 235, 567
MluCI AATT 3 cut(s) 571, 618, 803
MluNI TGGCCA 2 cut(s) 235, 567
Mox20I TGGCCA 2 cut(s) 235, 567
MscI TGGCCA 2 cut(s) 235, 567
MseI TTAA 2 cut(s) 125, 918
Msp20I TGGCCA 2 cut(s) 235, 567
MspA1I CMGCKG 2 cut(s) 395, 779
MspI CCGG 4 cut(s) 22, 68, 159, 530
MspR9I CCNGG 3 cut(s) 450, 660, 772
Mva1269I GAATGC 1 cut(s) 246
MvaI CCWGG 3 cut(s) 450, 660, 772
MwoI GCNNNNNNNGC 7 cut(s) 116, 197, 252, 392, 506, 685, 734
NcoI CCATGG 1 cut(s) 387
NdeI CATATG 1 cut(s) 259
NdeII GATC 6 cut(s) 273, 333, 463, 532, 604, 624
NlaIII CATG 6 cut(s) 81, 145, 209, 242, 269, 391
NmuCI GTSAC 2 cut(s) 284, 557
NspV TTCGAA 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PctI GAATGC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 491
PkrI GCNGC 5 cut(s) 27, 394, 499, 778, 856
Psp6I CCWGG 3 cut(s) 448, 658, 770
PspEI GGTNACC 1 cut(s) 284
PspFI CCCAGC 1 cut(s) 110
PspGI CCWGG 3 cut(s) 448, 658, 770
PspPI GGNCC 1 cut(s) 416
PsuI RGATCY 1 cut(s) 532
PvuII CAGCTG 2 cut(s) 395, 779
RsaI GTAC 1 cut(s) 885
RsaNI GTAC 1 cut(s) 884
SaqAI TTAA 2 cut(s) 125, 918
SatI GCNGC 5 cut(s) 26, 393, 498, 777, 855
Sau3AI GATC 6 cut(s) 273, 333, 463, 532, 604, 624
Sau96I GGNCC 1 cut(s) 416
ScaI AGTACT 1 cut(s) 885
ScrFI CCNGG 3 cut(s) 450, 660, 772
SexAI ACCWGGT 1 cut(s) 448
SfaNI GCATC 2 cut(s) 97, 194
SfuI TTCGAA 1 cut(s) 89
SinI GGWCC 1 cut(s) 416
Sse9I AATT 3 cut(s) 571, 618, 803
SspMI CTAG 1 cut(s) 501
StyD4I CCNGG 3 cut(s) 448, 658, 770
StyI CCWWGG 2 cut(s) 230, 387
TaaI ACNGT 2 cut(s) 181, 834
TaiI ACGT 2 cut(s) 559, 915
TaqI TCGA 6 cut(s) 89, 272, 323, 402, 623, 909
TasI AATT 3 cut(s) 571, 618, 803
TatI WGTACW 1 cut(s) 883
TfiI GAWTC 1 cut(s) 491
Tru1I TTAA 2 cut(s) 125, 918
Tru9I TTAA 2 cut(s) 125, 918
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 2 cut(s) 284, 557
TseI GCWGC 5 cut(s) 25, 392, 497, 776, 854
Tsp45I GTSAC 2 cut(s) 284, 557
TspDTI ATGAA 5 cut(s) 35, 117, 504, 711, 726
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 1 cut(s) 466
VpaK11BI GGWCC 1 cut(s) 416
XapI RAATTY 1 cut(s) 618
XspI CTAG 1 cut(s) 501
ZrmI AGTACT 1 cut(s) 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.