Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010327

Physical Location & Seq

Genomic Coordinates Reverse (-)

88285573 .. 88288074

Gene Structure 2502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG670900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCTGGAGGAGCGATCCACCAGTTATTGAGGAGGAAACTTCAGTTTCAATCTACCGCCCCGTCCTTTTTGTCTTCCCTAGCATCTAAGAAAGATGATGCTGGGACAAAGTCCCTCAGAGCATTTGCACTGCTTGGAGCAGGTGTTTCAGGACTATTAGGTTTTGCAACTGTAGCATCTGCTGATGAGGCTGAGCATGGATTAGAGTGCCCAAACTACCCATGGCCTCACCAGGGAATCCTTAGCTCATACGATCATGCTTCGATTCGCCGTGGTCATCAGGTTTACACACAAGTCTGTGCATCCTGCCATTCCATGTCTTTAGTATCTTACCGTGACTTGGTGGGCGTTGCATATACCGAAGAGGAGACAAAGGCTATGGCCGCTGAGATTGAGGTAACTGATGGCCCTAATGATGAGGGTGAGATGTTCACTCGCCCCGGTAAACTCAGTGATCGATTCCCTGAGCCGTATGCAAATGAGCAGGCAGCTAGGTTTGCCAATGGTGGGGCATATCCTCCCGATCTAAGTCTTATCACAAAGGCTCGTCACAATGGTCAGAATTATGTATTCGCCCTTCTCACAGGTTACCGTGATCCTCCAGCTGGTGTTCAGATCAGAGATGGTCTGCACTACAATCCTTACTTTCCTGGGGGAGCAATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTTGAGTATGAAGATGGTACTCCTGCTACTGAGGCTCAGATGGGAAAAGATATTGTGTCATTCTTGTCGTGGGCTGCAGAACCAGAAATGGAAGAGAGGAAACTGATGGGATTCAAATGGATTTTTGTTCTCTCATTGGCACTACTTCAAGCTGCTTATTACCGACGATTGAAGTGGTCAGTTCTGAAGTCTCGCAAGCTGGTTCTGGATGTTGTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Cytochrom_C1

Protein Analysis

304

Amino Acids

33.34

Weight (kDa)

6.08

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cytochrom_C1	PF02167	75 - 291	2.2e-100	Cytochrome C1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27240 AT5G40810 AT5G40810
fragaria_vesca	FvH4_6g52970 FvH4_6g52970
malus_domestica	MD09G1015600.v1.1 MD17G1016000.v1.1
prunus_persica	Prupe.3G301700_v2.0.a1 Prupe.3G301700_v2.0.a1
pyrus_communis	pycom111g01270 pycom17g01290
rosa_chinensis	RchiOBHm_Chr2g0174681
rosa_laevigata	RLG00000022285
rosa_roxburghii	Rroxscaffold_2G00077940
rosa_rugosa	Rorug02G0578700 Rorug02G0578700
rosa_samantha	Rh2AG660000 Rh2BG670900 Rh2CG634100 Rh2DG684500
rosa_wichuraiana	Rw2G054060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	131
AciI	CCGC	2 cut(s)	57, 384
AclWI	GGATC	2 cut(s)	10, 590
AcoI	YGGCCR	1 cut(s)	381
AcuI	CTGAAG	2 cut(s)	26, 899
AfaI	GTAC	1 cut(s)	712
AfiI	CCNNNNNNNGG	4 cut(s)	233, 340, 507, 605
AgsI	TTSAA	4 cut(s)	50, 808, 842, 865
AjnI	CCWGG	2 cut(s)	231, 649
AluBI	AGCT	5 cut(s)	246, 491, 605, 845, 892
AluI	AGCT	5 cut(s)	246, 491, 605, 845, 892
Alw26I	GTCTC	2 cut(s)	362, 888
AlwI	GGATC	2 cut(s)	10, 590
AoxI	GGCC	3 cut(s)	224, 381, 406
ApeKI	GCWGC	3 cut(s)	488, 767, 845
AspS9I	GGNCC	1 cut(s)	407
AsuC2I	CCSGG	1 cut(s)	441
AsuHPI	GGTGA	2 cut(s)	221, 434
BaeGI	GKGCMC	1 cut(s)	212
BarI	GAAGNNNNNNTAC	2 cut(s)	561, 593
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	3 cut(s)	500, 754, 832
BccI	CCATC	6 cut(s)	398, 617, 680, 701, 727, 793
BceAI	ACGGC	2 cut(s)	255, 454
BciT130I	CCWGG	2 cut(s)	233, 651
BcnI	CCSGG	1 cut(s)	441
BcoDI	GTCTC	2 cut(s)	362, 888
BfaI	CTAG	3 cut(s)	80, 492, 913
BfmI	CTRYAG	2 cut(s)	171, 768
BfuAI	ACCTGC	1 cut(s)	131
BisI	GCNGC	4 cut(s)	384, 489, 768, 846
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	4 cut(s)	385, 490, 769, 847
Bme1390I	CCNGG	3 cut(s)	233, 441, 651
BmgT120I	GGNCC	1 cut(s)	407
BmrFI	CCNGG	3 cut(s)	233, 441, 651
BmsI	GCATC	4 cut(s)	88, 92, 185, 311
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	2 cut(s)	27, 585
Bpu10I	CCTNAGC	2 cut(s)	242, 465
Bpu1102I	GCTNAGC	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	441
Bsa29I	ATCGAT	1 cut(s)	457
BsaJI	CCNNGG	5 cut(s)	221, 232, 271, 439, 650
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	4 cut(s)	233, 340, 507, 605
Bse1I	ACTGG	1 cut(s)	22
BseBI	CCWGG	2 cut(s)	233, 651
BseCI	ATCGAT	1 cut(s)	457
BseDI	CCNNGG	5 cut(s)	221, 232, 271, 439, 650
BseGI	GGATG	2 cut(s)	302, 907
BseLI	CCNNNNNNNGG	4 cut(s)	233, 340, 507, 605
BseMII	CTCAG	7 cut(s)	130, 183, 378, 456, 463, 714, 743
BseNI	ACTGG	1 cut(s)	22
BseRI	GAGGAG	3 cut(s)	24, 46, 380
BseSI	GKGCMC	1 cut(s)	212
BseXI	GCAGC	3 cut(s)	500, 754, 832
BseYI	CCCAGC	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	614
BshFI	GGCC	3 cut(s)	226, 383, 408
BshVI	ATCGAT	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	2 cut(s)	97, 118
BslI	CCNNNNNNNGG	4 cut(s)	233, 340, 507, 605
BsmAI	GTCTC	2 cut(s)	362, 888
BsmFI	GGGAC	2 cut(s)	97, 118
BsnI	GGCC	3 cut(s)	226, 383, 408
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	6 cut(s)	15, 253, 454, 523, 595, 615
Bsp1720I	GCTNAGC	1 cut(s)	192
Bsp19I	CCATGG	1 cut(s)	221
BspACI	CCGC	2 cut(s)	57, 384
BspANI	GGCC	3 cut(s)	226, 383, 408
BspCNI	CTCAG	7 cut(s)	129, 184, 379, 457, 462, 715, 742
BspDI	ATCGAT	1 cut(s)	457
BspMAI	CTGCAG	1 cut(s)	772
BspMI	ACCTGC	1 cut(s)	131
BspPI	GGATC	2 cut(s)	10, 590
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	5 cut(s)	221, 232, 271, 439, 650
BssMI	GATC	6 cut(s)	15, 253, 454, 523, 595, 615
BssT1I	CCWWGG	1 cut(s)	221
Bst2UI	CCWGG	2 cut(s)	233, 651
Bst4CI	ACNGT	3 cut(s)	172, 335, 593
Bst6I	CTCTTC	2 cut(s)	357, 780
BstC8I	GCNNGC	2 cut(s)	486, 890
BstDSI	CCRYGG	2 cut(s)	221, 271
BstEII	GGTNACC	1 cut(s)	587
BstF5I	GGATG	2 cut(s)	302, 907
BstKTI	GATC	6 cut(s)	18, 256, 457, 526, 598, 618
BstMAI	GTCTC	2 cut(s)	362, 888
BstMBI	GATC	6 cut(s)	15, 253, 454, 523, 595, 615
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 173, 188, 383, 497, 676, 725
BstNI	CCWGG	2 cut(s)	233, 651
BstPI	GGTNACC	1 cut(s)	587
BstSCI	CCNGG	3 cut(s)	231, 439, 649
BstSFI	CTRYAG	2 cut(s)	171, 768
BstSLI	GKGCMC	1 cut(s)	212
BstV1I	GCAGC	3 cut(s)	500, 754, 832
BstV2I	GAAGAC	1 cut(s)	66
Bsu15I	ATCGAT	1 cut(s)	457
BsuRI	GGCC	3 cut(s)	226, 383, 408
BsuTUI	ATCGAT	1 cut(s)	457
BtgI	CCRYGG	2 cut(s)	221, 271
BtsCI	GGATG	2 cut(s)	302, 907
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	2 cut(s)	128, 457
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	2 cut(s)	486, 890
Cfr13I	GGNCC	1 cut(s)	407
ClaI	ATCGAT	1 cut(s)	457
Csp6I	GTAC	1 cut(s)	711
CviAII	CATG	5 cut(s)	197, 222, 257, 316, 667
CviQI	GTAC	1 cut(s)	711
DpnI	GATC	6 cut(s)	17, 255, 456, 525, 597, 617
DpnII	GATC	6 cut(s)	15, 253, 454, 523, 595, 615
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	2 cut(s)	357, 780
EarI	CTCTTC	2 cut(s)	357, 780
Eco130I	CCWWGG	1 cut(s)	221
Eco57I	CTGAAG	2 cut(s)	26, 899
Eco91I	GGTNACC	1 cut(s)	587
EcoO65I	GGTNACC	1 cut(s)	587
EcoRII	CCWGG	2 cut(s)	231, 649
EcoT14I	CCWWGG	1 cut(s)	221
ErhI	CCWWGG	1 cut(s)	221
FaeI	CATG	5 cut(s)	200, 225, 260, 319, 670
FaqI	GGGAC	2 cut(s)	97, 118
FatI	CATG	5 cut(s)	196, 221, 256, 315, 666
Fnu4HI	GCNGC	4 cut(s)	384, 489, 768, 846
FokI	GGATG	1 cut(s)	289
Fsp4HI	GCNGC	4 cut(s)	384, 489, 768, 846
FspBI	CTAG	3 cut(s)	80, 492, 913
GluI	GCNGC	4 cut(s)	384, 489, 768, 846
GsaI	CCCAGC	1 cut(s)	105
GsuI	CTGGAG	2 cut(s)	27, 585
HaeIII	GGCC	3 cut(s)	226, 383, 408
HapII	CCGG	1 cut(s)	441
Hin1II	CATG	5 cut(s)	200, 225, 260, 319, 670
HinfI	GANTC	4 cut(s)	237, 265, 459, 804
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	2 cut(s)	221, 434
Hpy166II	GTNNAC	4 cut(s)	286, 432, 446, 910
Hpy188I	TCNGA	6 cut(s)	119, 561, 615, 620, 732, 879
Hpy188III	TCNNGA	3 cut(s)	150, 521, 899
Hpy8I	GTNNAC	4 cut(s)	286, 432, 446, 910
Hpy99I	CGWCG	1 cut(s)	861
HpyAV	CCTTC	1 cut(s)	587
HpyCH4III	ACNGT	3 cut(s)	172, 335, 593
HpyCH4V	TGCA	7 cut(s)	128, 167, 302, 353, 476, 631, 770
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 173, 188, 383, 497, 676, 725
Hsp92II	CATG	5 cut(s)	200, 225, 260, 319, 670
Kzo9I	GATC	6 cut(s)	15, 253, 454, 523, 595, 615
LmnI	GCTCC	3 cut(s)	11, 137, 656
Lsp1109I	GCAGC	3 cut(s)	500, 754, 832
LweI	GCATC	4 cut(s)	88, 92, 185, 311
MaeI	CTAG	3 cut(s)	80, 492, 913
MaeIII	GTNAC	4 cut(s)	335, 397, 548, 587
MalI	GATC	6 cut(s)	17, 255, 456, 525, 597, 617
MboI	GATC	6 cut(s)	15, 253, 454, 523, 595, 615
MboII	GAAGA	4 cut(s)	66, 374, 716, 797
MfeI	CAATTG	1 cut(s)	660
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	2 cut(s)	562, 660
MseI	TTAA	1 cut(s)	681
MspA1I	CMGCKG	2 cut(s)	386, 605
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	3 cut(s)	233, 441, 651
MunI	CAATTG	1 cut(s)	660
MvaI	CCWGG	2 cut(s)	233, 651
MwoI	GCNNNNNNNGC	7 cut(s)	11, 173, 188, 383, 497, 676, 725
NciI	CCSGG	1 cut(s)	441
NcoI	CCATGG	1 cut(s)	221
NdeII	GATC	6 cut(s)	15, 253, 454, 523, 595, 615
NlaIII	CATG	5 cut(s)	200, 225, 260, 319, 670
NmuCI	GTSAC	2 cut(s)	335, 548
PaqCI	CACCTGC	1 cut(s)	131
PfeI	GAWTC	4 cut(s)	237, 265, 459, 804
PflFI	GACNNNGTC	1 cut(s)	109
PkrI	GCNGC	4 cut(s)	385, 490, 769, 847
Psp6I	CCWGG	2 cut(s)	231, 649
PspEI	GGTNACC	1 cut(s)	587
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	2 cut(s)	231, 649
PspPI	GGNCC	1 cut(s)	407
PstI	CTGCAG	1 cut(s)	772
PsyI	GACNNNGTC	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	605
RsaI	GTAC	1 cut(s)	712
RsaNI	GTAC	1 cut(s)	711
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	4 cut(s)	384, 489, 768, 846
Sau3AI	GATC	6 cut(s)	15, 253, 454, 523, 595, 615
Sau96I	GGNCC	1 cut(s)	407
ScrFI	CCNGG	3 cut(s)	233, 441, 651
SduI	GDGCHC	1 cut(s)	212
SfaNI	GCATC	4 cut(s)	88, 92, 185, 311
SfcI	CTRYAG	2 cut(s)	171, 768
Sse9I	AATT	2 cut(s)	562, 660
SsiI	CCGC	2 cut(s)	57, 384
SspMI	CTAG	3 cut(s)	80, 492, 913
StyD4I	CCNGG	3 cut(s)	231, 439, 649
StyI	CCWWGG	1 cut(s)	221
TaaI	ACNGT	3 cut(s)	172, 335, 593
TaqI	TCGA	2 cut(s)	263, 457
TasI	AATT	2 cut(s)	562, 660
TauI	GCSGC	1 cut(s)	386
TfiI	GAWTC	4 cut(s)	237, 265, 459, 804
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TscAI	CASTG	2 cut(s)	135, 457
TseFI	GTSAC	2 cut(s)	335, 548
TseI	GCWGC	3 cut(s)	488, 767, 845
Tsp45I	GTSAC	2 cut(s)	335, 548
TspDTI	ATGAA	1 cut(s)	717
TspRI	CASTG	2 cut(s)	135, 457
Tth111I	GACNNNGTC	1 cut(s)	109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	219
XspI	CTAG	3 cut(s)	80, 492, 913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.