Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010327

Physical Location & Seq

Genomic Coordinates Reverse (-)

26601582 .. 26604835

Gene Structure 3254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G301700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCTGGAGGAGCGATCCACCAGTTATTGAGGAGGAAACTTCAGTCTCAATCTACTGCCCCTCCATTTTTGTCTTCCCTATTACATAAGAAAGACGATGCTGGGTCTGCTGGGGTAAGGTCCCTCAGAGCACTTGCTCTCCTTGGAGCAGGTGTTTCCGGACTCCTAAGTTTTGCAACTGTAGCATCTGCTGATGAGGCCGAACATGGATTAGAGTGCCCAAACTACCCCTGGCCTCACCAGGGAATCCTTAGCTCATACGATCATGCTTCGATTCGTCGCGGTCATCAGGTTTACACACAAGTCTGTGCATCCTGCCATTCCATGTCTTTAATATCTTACCGTGATTTGGTGGGAGTTGCATATACAGAAGAGGAGACAAAGGCTATGGCAGCTGAGATTGAGGTAGTTGATGGTCCTAATGATGAGGGTGAGATGTTTACTCGCCCTGGTAAACTTAGTGATCGATTCCCGCAGCCATATGCAAATGAGCAGGCTGCTAGGTTTGCTAATGGCGGGGCATATCCTCCAGATTTAAGTCTTATTACAAAGGCTCGTCACAATGGTCAGAATTATGTATTTGCCCTTCTCACTGGTTACCATGATCCTCCAGCTGGTGTTTCGATCCGTGAGGGTCTGCACTATAACCCTTACTTCCCTGGGGGAGCTATTGCTATGCCTAAAATGCTTAACGATGGTGCTGTTGAGTACGAAGATGGTACTCCTGCAACTGAGGCTCAGATGGGGAAAGATGTTGTGTCGTTCTTGACATGGGCCGCGGAACCAGAAATGGAAGAGAGAAAATTGATGGGATTCAAATGGATTTTTGTTCTCTCTCTTGCGCTACTTCAAGCAGCTTACTACCGGCGATTGAAGTGGTCAGTTCTCAAGTCCCGCAAGCTGGTTCTTGATGTTGTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Cytochrom_C1

Protein Analysis

308

Amino Acids

33.59

Weight (kDa)

6.21

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27240 AT5G40810 AT5G40810
fragaria_vesca	FvH4_6g52970 FvH4_6g52970
malus_domestica	MD09G1015600.v1.1 MD17G1016000.v1.1
prunus_persica	Prupe.3G301700_v2.0.a1 Prupe.3G301700_v2.0.a1
pyrus_communis	pycom111g01270 pycom17g01290
rosa_chinensis	RchiOBHm_Chr2g0174681
rosa_laevigata	RLG00000022285
rosa_roxburghii	Rroxscaffold_2G00077940
rosa_rugosa	Rorug02G0578700 Rorug02G0578700
rosa_samantha	Rh2AG660000 Rh2BG670900 Rh2CG634100 Rh2DG684500
rosa_wichuraiana	Rw2G054060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	140
AccII	CGCG	2 cut(s)	282, 779
AccIII	TCCGGA	1 cut(s)	158
AciI	CCGC	6 cut(s)	282, 473, 516, 777, 779, 895
AclWI	GGATC	3 cut(s)	10, 599, 619
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	2 cut(s)	710, 721
AfiI	CCNNNNNNNGG	4 cut(s)	242, 349, 614, 901
AgsI	TTSAA	3 cut(s)	817, 851, 874
AjnI	CCWGG	4 cut(s)	230, 240, 448, 658
AluBI	AGCT	6 cut(s)	255, 395, 614, 668, 857, 901
AluI	AGCT	6 cut(s)	255, 395, 614, 668, 857, 901
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	2 cut(s)	51, 371
AlwI	GGATC	3 cut(s)	10, 599, 619
Aor13HI	TCCGGA	1 cut(s)	158
AoxI	GGCC	3 cut(s)	198, 233, 774
ApeKI	GCWGC	4 cut(s)	392, 475, 497, 854
AspLEI	GCGC	1 cut(s)	844
AspS9I	GGNCC	3 cut(s)	120, 416, 774
AsuHPI	GGTGA	2 cut(s)	230, 443
AvaII	GGWCC	2 cut(s)	120, 416
BaeGI	GKGCMC	1 cut(s)	221
BarI	GAAGNNNNNNTAC	2 cut(s)	570, 602
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	4 cut(s)	404, 484, 487, 866
BccI	CCATC	5 cut(s)	407, 689, 710, 736, 802
BciT130I	CCWGG	4 cut(s)	232, 242, 450, 660
BcoDI	GTCTC	2 cut(s)	51, 371
BfaI	CTAG	2 cut(s)	501, 922
BfmI	CTRYAG	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	140
BisI	GCNGC	5 cut(s)	393, 476, 498, 777, 855
BlsI	GCNGC	5 cut(s)	394, 477, 499, 778, 856
Bme1390I	CCNGG	4 cut(s)	232, 242, 450, 660
Bme18I	GGWCC	2 cut(s)	120, 416
BmgT120I	GGNCC	3 cut(s)	120, 416, 774
BmiI	GGNNCC	2 cut(s)	122, 783
BmrFI	CCNGG	4 cut(s)	232, 242, 450, 660
BmsI	GCATC	3 cut(s)	88, 194, 320
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	3 cut(s)	27, 513, 594
Bpu10I	CCTNAGC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	872
Bsa29I	ATCGAT	1 cut(s)	466
BsaJI	CCNNGG	7 cut(s)	142, 230, 241, 448, 658, 659, 777
BsaWI	WCCGGW	1 cut(s)	158
BsaXI	ACNNNNNCTCC	6 cut(s)	46, 76, 123, 138, 153, 168
Bsc4I	CCNNNNNNNGG	4 cut(s)	242, 349, 614, 901
Bse118I	RCCGGY	1 cut(s)	864
Bse1I	ACTGG	2 cut(s)	22, 598
BseAI	TCCGGA	1 cut(s)	158
BseBI	CCWGG	4 cut(s)	232, 242, 450, 660
BseCI	ATCGAT	1 cut(s)	466
BseDI	CCNNGG	7 cut(s)	142, 230, 241, 448, 658, 659, 777
BseGI	GGATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	4 cut(s)	242, 349, 614, 901
BseMII	CTCAG	4 cut(s)	139, 387, 723, 752
BseNI	ACTGG	2 cut(s)	22, 598
BseRI	GAGGAG	3 cut(s)	24, 46, 389
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	4 cut(s)	404, 484, 487, 866
BseYI	CCCAGC	2 cut(s)	101, 110
BsgI	GTGCAG	1 cut(s)	623
Bsh1236I	CGCG	2 cut(s)	282, 779
BshFI	GGCC	3 cut(s)	200, 235, 776
BshVI	ATCGAT	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	133
BsiSI	CCGG	2 cut(s)	159, 865
BslFI	GGGAC	2 cut(s)	106, 877
BslI	CCNNNNNNNGG	4 cut(s)	242, 349, 614, 901
BsmAI	GTCTC	2 cut(s)	51, 371
BsmFI	GGGAC	2 cut(s)	106, 877
BsnI	GGCC	3 cut(s)	200, 235, 776
Bsp1286I	GDGCHC	2 cut(s)	133, 221
Bsp13I	TCCGGA	1 cut(s)	158
Bsp143I	GATC	5 cut(s)	15, 262, 463, 604, 624
BspACI	CCGC	6 cut(s)	282, 473, 516, 777, 779, 895
BspANI	GGCC	3 cut(s)	200, 235, 776
BspCNI	CTCAG	4 cut(s)	138, 388, 724, 751
BspDI	ATCGAT	1 cut(s)	466
BspEI	TCCGGA	1 cut(s)	158
BspFNI	CGCG	2 cut(s)	282, 779
BspLI	GGNNCC	2 cut(s)	122, 783
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	3 cut(s)	10, 599, 619
BsrFI	RCCGGY	1 cut(s)	864
BsrI	ACTGG	2 cut(s)	22, 598
BssAI	RCCGGY	1 cut(s)	864
BssECI	CCNNGG	7 cut(s)	142, 230, 241, 448, 658, 659, 777
BssMI	GATC	5 cut(s)	15, 262, 463, 604, 624
BssT1I	CCWWGG	1 cut(s)	142
Bst2UI	CCWGG	4 cut(s)	232, 242, 450, 660
Bst4CI	ACNGT	2 cut(s)	181, 344
Bst6I	CTCTTC	2 cut(s)	366, 789
BstC8I	GCNNGC	2 cut(s)	495, 899
BstDEI	CTNAG	7 cut(s)	125, 167, 251, 396, 458, 732, 738
BstDSI	CCRYGG	1 cut(s)	777
BstEII	GGTNACC	1 cut(s)	596
BstF5I	GGATG	1 cut(s)	311
BstFNI	CGCG	2 cut(s)	282, 779
BstHHI	GCGC	1 cut(s)	844
BstKTI	GATC	5 cut(s)	18, 265, 466, 607, 627
BstMAI	GTCTC	2 cut(s)	51, 371
BstMBI	GATC	5 cut(s)	15, 262, 463, 604, 624
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 107, 182, 197, 392, 506, 685, 734
BstNI	CCWGG	4 cut(s)	232, 242, 450, 660
BstPI	GGTNACC	1 cut(s)	596
BstSCI	CCNGG	4 cut(s)	230, 240, 448, 658
BstSFI	CTRYAG	1 cut(s)	180
BstSLI	GKGCMC	1 cut(s)	221
BstUI	CGCG	2 cut(s)	282, 779
BstV1I	GCAGC	4 cut(s)	404, 484, 487, 866
BstV2I	GAAGAC	1 cut(s)	66
Bsu15I	ATCGAT	1 cut(s)	466
BsuRI	GGCC	3 cut(s)	200, 235, 776
BsuTUI	ATCGAT	1 cut(s)	466
BtgI	CCRYGG	1 cut(s)	777
BtsCI	GGATG	1 cut(s)	311
BtsIMutI	CAGTG	1 cut(s)	591
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	2 cut(s)	495, 899
CfoI	GCGC	1 cut(s)	844
Cfr10I	RCCGGY	1 cut(s)	864
Cfr13I	GGNCC	3 cut(s)	120, 416, 774
Cfr42I	CCGCGG	1 cut(s)	780
ClaI	ATCGAT	1 cut(s)	466
Csp6I	GTAC	2 cut(s)	709, 720
CviAII	CATG	5 cut(s)	206, 266, 325, 602, 771
CviQI	GTAC	2 cut(s)	709, 720
DdeI	CTNAG	7 cut(s)	125, 167, 251, 396, 458, 732, 738
DpnI	GATC	5 cut(s)	17, 264, 465, 606, 626
DpnII	GATC	5 cut(s)	15, 262, 463, 604, 624
Eam1104I	CTCTTC	2 cut(s)	366, 789
EarI	CTCTTC	2 cut(s)	366, 789
Eco130I	CCWWGG	1 cut(s)	142
Eco47I	GGWCC	2 cut(s)	120, 416
Eco57I	CTGAAG	1 cut(s)	26
Eco91I	GGTNACC	1 cut(s)	596
EcoO109I	RGGNCCY	1 cut(s)	120
EcoO65I	GGTNACC	1 cut(s)	596
EcoRII	CCWGG	4 cut(s)	230, 240, 448, 658
EcoT14I	CCWWGG	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	142
FaeI	CATG	5 cut(s)	209, 269, 328, 605, 774
FaqI	GGGAC	2 cut(s)	106, 877
FatI	CATG	5 cut(s)	205, 265, 324, 601, 770
FauI	CCCGC	3 cut(s)	480, 509, 902
FauNDI	CATATG	1 cut(s)	481
Fnu4HI	GCNGC	5 cut(s)	393, 476, 498, 777, 855
FokI	GGATG	1 cut(s)	298
Fsp4HI	GCNGC	5 cut(s)	393, 476, 498, 777, 855
FspBI	CTAG	2 cut(s)	501, 922
GlaI	GCGC	1 cut(s)	843
GluI	GCNGC	5 cut(s)	393, 476, 498, 777, 855
GsaI	CCCAGC	2 cut(s)	105, 114
GsuI	CTGGAG	3 cut(s)	27, 513, 594
HaeIII	GGCC	3 cut(s)	200, 235, 776
HapII	CCGG	2 cut(s)	159, 865
HhaI	GCGC	1 cut(s)	844
Hin1II	CATG	5 cut(s)	209, 269, 328, 605, 774
Hin6I	GCGC	1 cut(s)	842
HinP1I	GCGC	1 cut(s)	842
HinfI	GANTC	5 cut(s)	162, 246, 274, 468, 813
HpaII	CCGG	2 cut(s)	159, 865
HphI	GGTGA	2 cut(s)	230, 443
Hpy166II	GTNNAC	4 cut(s)	295, 441, 455, 919
Hpy188I	TCNGA	3 cut(s)	128, 570, 741
Hpy188III	TCNNGA	4 cut(s)	159, 530, 766, 908
Hpy8I	GTNNAC	4 cut(s)	295, 441, 455, 919
Hpy99I	CGWCG	1 cut(s)	282
HpyAV	CCTTC	1 cut(s)	596
HpyCH4III	ACNGT	2 cut(s)	181, 344
HpyCH4V	TGCA	6 cut(s)	176, 311, 362, 485, 640, 728
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 107, 182, 197, 392, 506, 685, 734
HpyF3I	CTNAG	7 cut(s)	125, 167, 251, 396, 458, 732, 738
Hsp92II	CATG	5 cut(s)	209, 269, 328, 605, 774
HspAI	GCGC	1 cut(s)	842
Kpn2I	TCCGGA	1 cut(s)	158
KspI	CCGCGG	1 cut(s)	780
Kzo9I	GATC	5 cut(s)	15, 262, 463, 604, 624
LmnI	GCTCC	3 cut(s)	11, 146, 665
Lsp1109I	GCAGC	4 cut(s)	404, 484, 487, 866
LweI	GCATC	3 cut(s)	88, 194, 320
MaeI	CTAG	2 cut(s)	501, 922
MaeIII	GTNAC	2 cut(s)	557, 596
MalI	GATC	5 cut(s)	17, 264, 465, 606, 626
MboI	GATC	5 cut(s)	15, 262, 463, 604, 624
MboII	GAAGA	4 cut(s)	66, 383, 725, 806
MhlI	GDGCHC	2 cut(s)	133, 221
MluCI	AATT	2 cut(s)	571, 803
MlyI	GAGTC	1 cut(s)	156
MroI	TCCGGA	1 cut(s)	158
MseI	TTAA	3 cut(s)	332, 536, 690
MspA1I	CMGCKG	3 cut(s)	395, 614, 779
MspI	CCGG	2 cut(s)	159, 865
MspR9I	CCNGG	4 cut(s)	232, 242, 450, 660
MvaI	CCWGG	4 cut(s)	232, 242, 450, 660
MvnI	CGCG	2 cut(s)	282, 779
MwoI	GCNNNNNNNGC	8 cut(s)	11, 107, 182, 197, 392, 506, 685, 734
NdeI	CATATG	1 cut(s)	481
NdeII	GATC	5 cut(s)	15, 262, 463, 604, 624
NlaIII	CATG	5 cut(s)	209, 269, 328, 605, 774
NlaIV	GGNNCC	2 cut(s)	122, 783
NmuCI	GTSAC	1 cut(s)	557
PaqCI	CACCTGC	1 cut(s)	140
PasI	CCCWGGG	1 cut(s)	659
PfeI	GAWTC	4 cut(s)	246, 274, 468, 813
PkrI	GCNGC	5 cut(s)	394, 477, 499, 778, 856
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PpuMI	RGGWCCY	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	120
Psp6I	CCWGG	4 cut(s)	230, 240, 448, 658
PspEI	GGTNACC	1 cut(s)	596
PspFI	CCCAGC	2 cut(s)	101, 110
PspGI	CCWGG	4 cut(s)	230, 240, 448, 658
PspN4I	GGNNCC	2 cut(s)	122, 783
PspPI	GGNCC	3 cut(s)	120, 416, 774
PspPPI	RGGWCCY	1 cut(s)	120
PvuII	CAGCTG	2 cut(s)	395, 614
RsaI	GTAC	2 cut(s)	710, 721
RsaNI	GTAC	2 cut(s)	709, 720
SacII	CCGCGG	1 cut(s)	780
SaqAI	TTAA	3 cut(s)	332, 536, 690
SatI	GCNGC	5 cut(s)	393, 476, 498, 777, 855
Sau3AI	GATC	5 cut(s)	15, 262, 463, 604, 624
Sau96I	GGNCC	3 cut(s)	120, 416, 774
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	4 cut(s)	232, 242, 450, 660
SduI	GDGCHC	2 cut(s)	133, 221
SfaNI	GCATC	3 cut(s)	88, 194, 320
SfcI	CTRYAG	1 cut(s)	180
Sfr303I	CCGCGG	1 cut(s)	780
SgrBI	CCGCGG	1 cut(s)	780
SinI	GGWCC	2 cut(s)	120, 416
SmlI	CTYRAG	1 cut(s)	887
SmoI	CTYRAG	1 cut(s)	887
Sse9I	AATT	2 cut(s)	571, 803
SsiI	CCGC	6 cut(s)	282, 473, 516, 777, 779, 895
SspMI	CTAG	2 cut(s)	501, 922
StyD4I	CCNGG	4 cut(s)	230, 240, 448, 658
StyI	CCWWGG	1 cut(s)	142
TaaI	ACNGT	2 cut(s)	181, 344
TaqI	TCGA	3 cut(s)	272, 466, 623
TasI	AATT	2 cut(s)	571, 803
TauI	GCSGC	1 cut(s)	779
TfiI	GAWTC	4 cut(s)	246, 274, 468, 813
Tru1I	TTAA	3 cut(s)	332, 536, 690
Tru9I	TTAA	3 cut(s)	332, 536, 690
TscAI	CASTG	1 cut(s)	598
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	4 cut(s)	392, 475, 497, 854
Tsp45I	GTSAC	1 cut(s)	557
TspGWI	ACGGA	1 cut(s)	617
TspRI	CASTG	1 cut(s)	598
VpaK11BI	GGWCC	2 cut(s)	120, 416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	228
XspI	CTAG	2 cut(s)	501, 922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.