Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010671

Physical Location & Seq

Genomic Coordinates Forward (+)

10155438 .. 10158215

Gene Structure 2778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G27440.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGGAGAAATTATCTAATGGCGTTAGAGATCACTGTTTGATCAGTGACTATGTTTCTCCTTCAGCTCCTGCTCCTCTTAAACAACCTTTCGTGATCGGTGTTGCCGGAGGAACCGCCTCCGGGAAGACGACGGTTTGCAATATGATCATGTCTCAGTTACATGATCAACGTGTTGTCCTTGTTAACCAAGATTCGTTTTACCACTCGCTTACTAAGGAGAAATTGAACAAGGTTCATGAATATAACTTCGATCATCCTGATGCATTCAACACTGAGGTTTTACTTTCATGTATGGAGAAGTTACGATCTGGACAACCAGTGAACATTCCGAGTTACGATTTCAAAATCCATCAGAGCATTGAATCATCAAGTCCGGTTAATCCTGGTGATGTAATCATCTTAGAGGGAATCCTAGTTCTTAATGATCCTCGAGTTCGTGATCTCATGAACATGAAGATCTTTGTCGATACAGATGCTGATGTACGACTCTCGAGAAGAATACAGCGTGACACCGTCGAGAGAGGAAGAAACATACAGAATGTGCTTGAACAGTATACTAAGTTTGTGAAGCCGAGCTTCGATGAATACATTCAGCCGTCGATGAAGTATGCTGATATAATCATTCCACGAGGAGGAGATAATGATGTTGCAATTGATCTCATTGTACAACATATTCGTACAAAGCTGTGCCAACACAATCTCTGTAAGATATACTCAAACATCTTCATCATATCTTCAACATTCCAGATCAAAGGAATGCATACTCTTATCCGTGATATCAACACAACCAAGCATGATTTCGTCTTCTACGCTGACCGATTGATTCGACTGGTCGTGGAACATGGACTTGGTCATCTTCCTTTCACAGAGAAACAGATCACAACTCCAACAGGGTCAGTGTACACTGGAGTCGACTTCTGCAAGAGATTGTGCGGTGTCTCAGTGATCAGAAGTGGAGAAAGCATGGAAAACGCTCTAAGAGCTTGCTGCAATGGGATTAAGATTGGTAAAATCCTCATTCACAGAGAGAATAACGATGGTCGTCAGTTAATATATGAGAAGTTGCCAAAAGATATCTCAAGCAGACATGTCTTCCTCCTTGACCCTGTTCTAGCATCAGGCTACTCTGCAGTTAAAGCTATAACTTTGCTTCTAAGCAAGGGAGTTCCAGAATCACATATCATCTTTCTCAATCTTATAGCAGCACCTCAAGGCATCCACGCGCTTTGCAAGAAATTCCCGATGCTAAAGATTGTGACATCGGAAATCGATTCATCTCTCAATGAGGACTCACGTGTGATTCCAGGCTTGGGAGAATTTGCAGACCGTTACTTTGGGACAAACAACATTAATTCAAAAGTATCAAGCTTGTCTACAAATCTCAAGTTAAGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

PRK UPRTase

Protein Analysis

465

Amino Acids

52.12

Weight (kDa)

8.55

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRK	PF00485	11 - 170	1.6e-43	Phosphoribulokinase / Uridine kinase family
UPRTase	PF14681	198 - 400	3.3e-73	Uracil phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27440 AT3G27440 AT3G27440
fragaria_vesca	FvH4_6g51940
malus_domestica	MD09G1021600.v1.1
prunus_persica	Prupe.3G294700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0173421
rosa_laevigata	RLG00000022188
rosa_multiflora	Rmu_co8519037.1_g000001 Rmu_ssc0000282.1_g000014
rosa_roxburghii	Rroxscaffold_2G00078870
rosa_rugosa	Rorug02G0568200 Rorug02G0568300 Rorug02G0568400 Rorug02G0568500
rosa_samantha	Rh2AG648700 Rh2BG659300 Rh2CG624600 Rh2DG674500
rosa_wichuraiana	Rw2G053250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	554, 912, 1373
AccII	CGCG	1 cut(s)	1223
AciI	CCGC	2 cut(s)	114, 933
AclWI	GGATC	1 cut(s)	419
AcsI	RAATTY	2 cut(s)	1235, 1316
AcuI	CTGAAG	1 cut(s)	45
AcvI	CACGTG	1 cut(s)	1295
AfaI	GTAC	4 cut(s)	483, 666, 679, 902
AfiI	CCNNNNNNNGG	3 cut(s)	120, 632, 1310
AflIII	ACRYGT	3 cut(s)	169, 1087, 1294
AgsI	TTSAA	7 cut(s)	226, 268, 343, 362, 548, 738, 1356
AjnI	CCWGG	2 cut(s)	382, 1303
AjuI	GAANNNNNNNTTGG	4 cut(s)	782, 814, 831, 863
AloI	GAACNNNNNNTCC	2 cut(s)	399, 431
AluBI	AGCT	7 cut(s)	65, 576, 685, 983, 1139, 1368, 1395
AluI	AGCT	7 cut(s)	65, 576, 685, 983, 1139, 1368, 1395
Alw26I	GTCTC	2 cut(s)	156, 943
AlwI	GGATC	1 cut(s)	419
AlwNI	CAGNNNCTG	2 cut(s)	68, 476
Ama87I	CYCGRG	2 cut(s)	429, 490
ApeKI	GCWGC	2 cut(s)	987, 1202
ApoI	RAATTY	2 cut(s)	1235, 1316
ArsI	GACNNNNNNTTYG	2 cut(s)	1316, 1348
AseI	ATTAAT	1 cut(s)	1350
Asp700I	GAANNNNTTC	1 cut(s)	588
AspLEI	GCGC	1 cut(s)	1225
AsuC2I	CCSGG	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	398
AvaI	CYCGRG	2 cut(s)	429, 490
BauI	CACGAG	1 cut(s)	627
BbrPI	CACGTG	1 cut(s)	1295
BbsI	GAAGAC	3 cut(s)	131, 796, 1084
BbvI	GCAGC	2 cut(s)	974, 1214
BccI	CCATC	2 cut(s)	357, 1031
BceAI	ACGGC	1 cut(s)	580
BcgI	CGANNNNNNTGC	2 cut(s)	455, 489
BciT130I	CCWGG	2 cut(s)	384, 1305
BclI	TGATCA	4 cut(s)	39, 144, 163, 945
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	2 cut(s)	156, 943
BfaI	CTAG	2 cut(s)	413, 1112
BfmI	CTRYAG	1 cut(s)	1128
BglII	AGATCT	1 cut(s)	456
BisI	GCNGC	2 cut(s)	988, 1203
BlsI	GCNGC	2 cut(s)	989, 1204
Bme1390I	CCNGG	3 cut(s)	121, 384, 1305
BmeT110I	CYCGRG	2 cut(s)	429, 490
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	3 cut(s)	121, 384, 1305
BmsI	GCATC	5 cut(s)	250, 463, 1124, 1224, 1233
BpiI	GAAGAC	3 cut(s)	131, 796, 1084
BpmI	CTGGAG	1 cut(s)	927
BpuEI	CTTGAG	3 cut(s)	1063, 1194, 1367
BpuMI	CCSGG	1 cut(s)	121
Bsa29I	ATCGAT	1 cut(s)	1269
BsaAI	YACGTR	1 cut(s)	1295
BsaWI	WCCGGW	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 632, 1310
Bse1I	ACTGG	3 cut(s)	317, 834, 910
Bse3DI	GCAATG	1 cut(s)	997
BseBI	CCWGG	2 cut(s)	384, 1305
BseCI	ATCGAT	1 cut(s)	1269
BseGI	GGATG	2 cut(s)	253, 1215
BseLI	CCNNNNNNNGG	3 cut(s)	120, 632, 1310
BseMI	GCAATG	1 cut(s)	997
BseMII	CTCAG	3 cut(s)	167, 264, 954
BseNI	ACTGG	3 cut(s)	317, 834, 910
BseRI	GAGGAG	3 cut(s)	63, 645, 648
BseXI	GCAGC	2 cut(s)	974, 1214
Bsh1236I	CGCG	1 cut(s)	1223
BshVI	ATCGAT	1 cut(s)	1269
BsiHKCI	CYCGRG	2 cut(s)	429, 490
BsiSI	CCGG	3 cut(s)	105, 120, 374
BslFI	GGGAC	1 cut(s)	1351
BslI	CCNNNNNNNGG	3 cut(s)	120, 632, 1310
BsmAI	GTCTC	2 cut(s)	156, 943
BsmFI	GGGAC	1 cut(s)	1351
BsmI	GAATGC	2 cut(s)	263, 762
BsoBI	CYCGRG	2 cut(s)	429, 490
Bsp1407I	TGTACA	2 cut(s)	664, 900
BspACI	CCGC	2 cut(s)	114, 933
BspCNI	CTCAG	3 cut(s)	166, 265, 953
BspDI	ATCGAT	1 cut(s)	1269
BspFNI	CGCG	1 cut(s)	1223
BspHI	TCATGA	2 cut(s)	235, 444
BspLI	GGNNCC	1 cut(s)	112
BspMAI	CTGCAG	1 cut(s)	1132
BspPI	GGATC	1 cut(s)	419
BsrDI	GCAATG	1 cut(s)	997
BsrGI	TGTACA	2 cut(s)	664, 900
BsrI	ACTGG	3 cut(s)	317, 834, 910
BssNAI	GTATAC	1 cut(s)	555
BssSI	CACGAG	1 cut(s)	627
Bst1107I	GTATAC	1 cut(s)	555
Bst2BI	CACGAG	1 cut(s)	627
Bst2UI	CCWGG	2 cut(s)	384, 1305
Bst4CI	ACNGT	5 cut(s)	35, 133, 514, 552, 1328
BstAUI	TGTACA	2 cut(s)	664, 900
BstBAI	YACGTR	1 cut(s)	1295
BstC8I	GCNNGC	1 cut(s)	985
BstDEI	CTNAG	8 cut(s)	153, 213, 273, 400, 558, 940, 977, 1154
BstF5I	GGATG	2 cut(s)	253, 1215
BstFNI	CGCG	1 cut(s)	1223
BstHHI	GCGC	1 cut(s)	1225
BstMAI	GTCTC	2 cut(s)	156, 943
BstMWI	GCNNNNNNNGC	2 cut(s)	980, 1136
BstNI	CCWGG	2 cut(s)	384, 1305
BstNSI	RCATGY	1 cut(s)	1091
BstSCI	CCNGG	3 cut(s)	119, 382, 1303
BstSFI	CTRYAG	1 cut(s)	1128
BstUI	CGCG	1 cut(s)	1223
BstV1I	GCAGC	2 cut(s)	974, 1214
BstV2I	GAAGAC	3 cut(s)	131, 796, 1084
BstX2I	RGATCY	1 cut(s)	456
BstYI	RGATCY	1 cut(s)	456
BstZ17I	GTATAC	1 cut(s)	555
Bsu15I	ATCGAT	1 cut(s)	1269
BsuTUI	ATCGAT	1 cut(s)	1269
BtsCI	GGATG	2 cut(s)	253, 1215
BtsIMutI	CAGTG	7 cut(s)	31, 49, 270, 324, 903, 903, 948
Cac8I	GCNNGC	1 cut(s)	985
CaiI	CAGNNNCTG	2 cut(s)	68, 476
CciI	TCATGA	2 cut(s)	235, 444
CfoI	GCGC	1 cut(s)	1225
ClaI	ATCGAT	1 cut(s)	1269
Csp6I	GTAC	4 cut(s)	482, 665, 678, 901
CspCI	CAANNNNNGTGG	2 cut(s)	1208, 1243
CviQI	GTAC	4 cut(s)	482, 665, 678, 901
DdeI	CTNAG	8 cut(s)	153, 213, 273, 400, 558, 940, 977, 1154
Eco32I	GATATC	2 cut(s)	778, 1075
Eco57I	CTGAAG	1 cut(s)	45
Eco72I	CACGTG	1 cut(s)	1295
Eco88I	CYCGRG	2 cut(s)	429, 490
EcoRII	CCWGG	2 cut(s)	382, 1303
EcoRV	GATATC	2 cut(s)	778, 1075
EcoT22I	ATGCAT	2 cut(s)	265, 762
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FaqI	GGGAC	1 cut(s)	1351
FbaI	TGATCA	4 cut(s)	39, 144, 163, 945
FblI	GTMKAC	3 cut(s)	554, 912, 1373
Fnu4HI	GCNGC	2 cut(s)	988, 1203
FokI	GGATG	2 cut(s)	240, 1202
Fsp4HI	GCNGC	2 cut(s)	988, 1203
FspBI	CTAG	2 cut(s)	413, 1112
GlaI	GCGC	1 cut(s)	1224
GluI	GCNGC	2 cut(s)	988, 1203
GsuI	CTGGAG	1 cut(s)	927
HapII	CCGG	3 cut(s)	105, 120, 374
HhaI	GCGC	1 cut(s)	1225
Hin6I	GCGC	1 cut(s)	1223
HinP1I	GCGC	1 cut(s)	1223
HincII	GTYRAC	2 cut(s)	184, 913
HindII	GTYRAC	2 cut(s)	184, 913
HindIII	AAGCTT	1 cut(s)	1366
HpaI	GTTAAC	1 cut(s)	184
HpaII	CCGG	3 cut(s)	105, 120, 374
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	7 cut(s)	184, 322, 555, 901, 903, 913, 1374
Hpy188I	TCNGA	4 cut(s)	330, 354, 950, 1264
Hpy8I	GTNNAC	7 cut(s)	184, 322, 555, 901, 903, 913, 1374
Hpy99I	CGWCG	3 cut(s)	133, 518, 601
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	5 cut(s)	35, 133, 514, 552, 1328
HpyCH4IV	ACGT	2 cut(s)	169, 1294
HpyCH4V	TGCA	9 cut(s)	138, 263, 650, 760, 921, 990, 1130, 1230, 1322
HpyF10VI	GCNNNNNNNGC	2 cut(s)	980, 1136
HpyF3I	CTNAG	8 cut(s)	153, 213, 273, 400, 558, 940, 977, 1154
HpySE526I	ACGT	2 cut(s)	169, 1294
HspAI	GCGC	1 cut(s)	1223
Ksp22I	TGATCA	4 cut(s)	39, 144, 163, 945
KspAI	GTTAAC	1 cut(s)	184
LmnI	GCTCC	2 cut(s)	70, 76
Lsp1109I	GCAGC	2 cut(s)	974, 1214
LweI	GCATC	5 cut(s)	250, 463, 1124, 1224, 1233
MaeI	CTAG	2 cut(s)	413, 1112
MaeII	ACGT	2 cut(s)	169, 1294
MaeIII	GTNAC	7 cut(s)	44, 156, 300, 332, 506, 1255, 1328
MboII	GAAGA	9 cut(s)	136, 466, 507, 537, 715, 726, 796, 848, 1084
MfeI	CAATTG	1 cut(s)	651
MflI	RGATCY	1 cut(s)	456
MluCI	AATT	6 cut(s)	8, 221, 651, 1235, 1316, 1351
MlyI	GAGTC	3 cut(s)	480, 918, 1283
MmeI	TCCRAC	1 cut(s)	911
Mph1103I	ATGCAT	2 cut(s)	265, 762
MroXI	GAANNNNTTC	1 cut(s)	588
MseI	TTAA	9 cut(s)	78, 183, 378, 420, 999, 1049, 1134, 1350, 1388
MslI	CAYNNNNRTG	2 cut(s)	258, 449
MspI	CCGG	3 cut(s)	105, 120, 374
MspR9I	CCNGG	3 cut(s)	121, 384, 1305
MunI	CAATTG	1 cut(s)	651
Mva1269I	GAATGC	2 cut(s)	263, 762
MvaI	CCWGG	2 cut(s)	384, 1305
MvnI	CGCG	1 cut(s)	1223
MwoI	GCNNNNNNNGC	2 cut(s)	980, 1136
NciI	CCSGG	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	112
NmeAIII	GCCGAG	1 cut(s)	597
NmuCI	GTSAC	3 cut(s)	44, 506, 1255
NsiI	ATGCAT	2 cut(s)	265, 762
NspI	RCATGY	1 cut(s)	1091
PaeR7I	CTCGAG	2 cut(s)	429, 490
PagI	TCATGA	2 cut(s)	235, 444
PciI	ACATGT	1 cut(s)	1087
PctI	GAATGC	2 cut(s)	263, 762
PdmI	GAANNNNTTC	1 cut(s)	588
PfeI	GAWTC	7 cut(s)	191, 362, 408, 823, 1172, 1271, 1300
PflFI	GACNNNGTC	2 cut(s)	512, 849
PfoI	TCCNGGA	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	989, 1204
PleI	GAGTC	3 cut(s)	480, 917, 1283
PmaCI	CACGTG	1 cut(s)	1295
PmlI	CACGTG	1 cut(s)	1295
PpsI	GAGTC	3 cut(s)	480, 917, 1283
Ppu21I	YACGTR	1 cut(s)	1295
PscI	ACATGT	1 cut(s)	1087
PshBI	ATTAAT	1 cut(s)	1350
Psp6I	CCWGG	2 cut(s)	382, 1303
PspCI	CACGTG	1 cut(s)	1295
PspGI	CCWGG	2 cut(s)	382, 1303
PspN4I	GGNNCC	1 cut(s)	112
PspXI	VCTCGAGB	1 cut(s)	429
PstI	CTGCAG	1 cut(s)	1132
PstNI	CAGNNNCTG	2 cut(s)	68, 476
PsuI	RGATCY	1 cut(s)	456
PsyI	GACNNNGTC	2 cut(s)	512, 849
RsaI	GTAC	4 cut(s)	483, 666, 679, 902
RsaNI	GTAC	4 cut(s)	482, 665, 678, 901
RseI	CAYNNNNRTG	2 cut(s)	258, 449
SalI	GTCGAC	1 cut(s)	911
SaqAI	TTAA	9 cut(s)	78, 183, 378, 420, 999, 1049, 1134, 1350, 1388
SatI	GCNGC	2 cut(s)	988, 1203
SchI	GAGTC	3 cut(s)	480, 918, 1283
ScrFI	CCNGG	3 cut(s)	121, 384, 1305
SfaNI	GCATC	5 cut(s)	250, 463, 1124, 1224, 1233
SfcI	CTRYAG	1 cut(s)	1128
Sfr274I	CTCGAG	2 cut(s)	429, 490
SlaI	CTCGAG	2 cut(s)	429, 490
SmiMI	CAYNNNNRTG	2 cut(s)	258, 449
SmlI	CTYRAG	5 cut(s)	429, 490, 1078, 1209, 1382
SmoI	CTYRAG	5 cut(s)	429, 490, 1078, 1209, 1382
Sse9I	AATT	6 cut(s)	8, 221, 651, 1235, 1316, 1351
SsiI	CCGC	2 cut(s)	114, 933
SspMI	CTAG	2 cut(s)	413, 1112
StyD4I	CCNGG	3 cut(s)	119, 382, 1303
TaaI	ACNGT	5 cut(s)	35, 133, 514, 552, 1328
TaiI	ACGT	2 cut(s)	172, 1297
TaqII	GACCGA	1 cut(s)	831
TasI	AATT	6 cut(s)	8, 221, 651, 1235, 1316, 1351
TatI	WGTACW	2 cut(s)	664, 900
TfiI	GAWTC	7 cut(s)	191, 362, 408, 823, 1172, 1271, 1300
Tru1I	TTAA	9 cut(s)	78, 183, 378, 420, 999, 1049, 1134, 1350, 1388
Tru9I	TTAA	9 cut(s)	78, 183, 378, 420, 999, 1049, 1134, 1350, 1388
TscAI	CASTG	7 cut(s)	38, 49, 277, 324, 903, 910, 948
TseFI	GTSAC	3 cut(s)	44, 506, 1255
TseI	GCWGC	2 cut(s)	987, 1202
Tsp45I	GTSAC	3 cut(s)	44, 506, 1255
TspDTI	ATGAA	9 cut(s)	224, 252, 276, 461, 467, 597, 617, 715, 1263
TspGWI	ACGGA	1 cut(s)	761
TspRI	CASTG	7 cut(s)	38, 49, 277, 324, 903, 910, 948
Tth111I	GACNNNGTC	2 cut(s)	512, 849
VspI	ATTAAT	1 cut(s)	1350
XapI	RAATTY	2 cut(s)	1235, 1316
XceI	RCATGY	1 cut(s)	1091
XhoI	CTCGAG	2 cut(s)	429, 490
XmiI	GTMKAC	3 cut(s)	554, 912, 1373
XmnI	GAANNNNTTC	1 cut(s)	588
XspI	CTAG	2 cut(s)	413, 1112
Zsp2I	ATGCAT	2 cut(s)	265, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.