RchiOBHm_Chr2g0173421

Belongs to the uridine kinase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
86434704 .. 86438073
3370 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54064

Sequence Viewer

Length: 1428 bp
ATGGATTCTGAAGCCGTGGCTTCTTCATTGAGCATTGGCATCAAACACCATCTCTCTCTCCAATCTAATAATGCATCCTCCTCCTCTAGTCCCAGGGCCCCAACTAAGCAATCCTTTTTCATTGGTGTCGCTGGAGGAACTGCATCTGGAAAAACTACAGTGTGCAATTTGATCATCTCCCAGCTCCGTGATCAGCGTGTTGTTTTAGTAAATCAAGATTCATTTTATCACTCCTTGAATGAGGAGAAGTTGAAGACGGTGCATGAATACAACTTTGACCATCCTGAGTCCTTTGATACGGAGTTGTTGCTTTCTTGTATGGAGAAATTAAAGCTTGGACAGGCAGTTAGCATCCCAAATTATGATTTTAAGACCCATCAAAGCATAGAACCCGCTCGCCAGGTTAACCCCTCAGACATTATCATTTTAGAAGGAATACTTGTTCTCCATGATCCTCGTGTCCGTGATCTCATGAACATGAAAATCTTCGTCGACACAGACTCTGATGTACGGCTCTCTAGGAGAATTCAACGTGATACTGTAGAAAGAGGCAGAAATATACAGAATGTGCTTGAACAATATACCAAATTCGTGAAGCCTAGTTTTGATGAATTCATATTGCCCTCGAAAAAGTATGCAGATATAATCATTCCTCGAGGTGGAGATAATGATGTTGCCATTGACTTGATAGTGCAACATATTCATACAAAGCTTGGCCAACATGATCTGTGTAAAATATATCCAAATCTTTTCCTTATCTTTTCCACATTTCAGATACGAGGAATGCATACATTAATCCGTGATGCCCAAACAACAAAGCATGACTTTGTCTTTTACTCAGACCGACTTATTCGATTGGTTGTGGAGCATGGGCTAGGTCATCTTCCCTTCCAAGAACAACAGATTATTACCCCAACAGGATCTATATACAGTGGAGTTGTTTTCTGTAAAAGGTTGTGTGGTGTTTCTGTTATTAGAAGTGGAGAAAGCATGGAGAATGCTCTCAGAGCATGTTGTAAGGGAATAAAAATCGGAAAAATCCTCATCCACGGAGAGGGTAACAGTGGTCGACAGTTAATCTATGAGAAGCTACCGAAAGACATCTCAAGCCGCCATGTCTTATTCCTCGATCCTGTTCTGTCTTCAGGAAACTCTGCCATCAAAGCTATATCTCTGCTACTCAGTAAGGGTGTACCAGAATCCAACATCATCTTCCTTAACCTTATAGCAGCACCGGAGGGAATACATGCGGTTTTGAAGAGATTTCCAATGCTAAAACTTGTTACATCAGAGATTGACTTATCTTTGAATGAAGATTTGCGTGTGATCCCAGGAATGGGAGAGTTTGGAGATCGTTATTTTGGTACAGATAGTAATGAGACCGGTACTGGTTCAAGTTCGAGTTCAAGCTCAAAGACACCTAAATAA

Protein Analysis

475

Amino Acids

52.83

Weight (kDa)

7.69

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRK PF00485 40 - 226 1.6e-50 Phosphoribulokinase / Uridine kinase family
UPRTase PF14681 255 - 456 4.1e-71 Uracil phosphoribosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 654
AccBSI CCGCTC 1 cut(s) 395
AccI GTMKAC 2 cut(s) 492, 1069
AciI CCGC 3 cut(s) 393, 1111, 1250
AclWI GGATC 4 cut(s) 446, 928, 1124, 1321
AcoI YGGCCR 1 cut(s) 715
AcsI RAATTY 3 cut(s) 525, 587, 611
AcuI CTGAAG 2 cut(s) 30, 1128
AfaI GTAC 4 cut(s) 510, 1194, 1366, 1387
AfiI CCNNNNNNNGG 4 cut(s) 659, 1054, 1336, 1337
AgeI ACCGGT 1 cut(s) 1382
AgsI TTSAA 8 cut(s) 238, 253, 530, 575, 1258, 1309, 1395, 1407
AjnI CCWGG 3 cut(s) 92, 399, 1330
AjuI GAANNNNNNNTTGG 2 cut(s) 1196, 1228
AloI GAACNNNNNNTCC 2 cut(s) 426, 458
AluBI AGCT 6 cut(s) 184, 334, 712, 1090, 1166, 1410
AluI AGCT 6 cut(s) 184, 334, 712, 1090, 1166, 1410
Alw26I GTCTC 1 cut(s) 1373
AlwI GGATC 4 cut(s) 446, 928, 1124, 1321
AlwNI CAGNNNCTG 1 cut(s) 503
Ama87I CYCGRG 1 cut(s) 654
AoxI GGCC 2 cut(s) 96, 715
ApaI GGGCCC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 1229
ApoI RAATTY 3 cut(s) 525, 587, 611
AseI ATTAAT 1 cut(s) 794
AsiGI ACCGGT 1 cut(s) 1382
Asp700I GAANNNNTTC 1 cut(s) 485
AspS9I GGNCC 2 cut(s) 96, 97
AvaI CYCGRG 1 cut(s) 654
BaeGI GKGCMC 1 cut(s) 100
BalI TGGCCA 1 cut(s) 717
BanII GRGCYC 1 cut(s) 100
BauI CACGAG 1 cut(s) 456
BbsI GAAGAC 2 cut(s) 260, 1134
BbvI GCAGC 1 cut(s) 1241
BccI CCATC 4 cut(s) 57, 288, 384, 1166
BceAI ACGGC 1 cut(s) 527
BciT130I CCWGG 3 cut(s) 94, 401, 1332
BclI TGATCA 2 cut(s) 171, 190
BcoDI GTCTC 1 cut(s) 1373
BfaI CTAG 4 cut(s) 87, 519, 600, 875
BfmI CTRYAG 2 cut(s) 156, 540
BisI GCNGC 2 cut(s) 1111, 1230
BlsI GCNGC 2 cut(s) 1112, 1231
Bme1390I CCNGG 3 cut(s) 94, 401, 1332
BmeT110I CYCGRG 1 cut(s) 654
BmgT120I GGNCC 2 cut(s) 96, 97
BmiI GGNNCC 2 cut(s) 98, 99
BmrFI CCNGG 3 cut(s) 94, 401, 1332
BmsI GCATC 5 cut(s) 48, 83, 152, 360, 793
BpiI GAAGAC 2 cut(s) 260, 1134
BpmI CTGGAG 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 1090
BsaI GGTCTC 1 cut(s) 1373
BsaJI CCNNGG 5 cut(s) 15, 92, 93, 1048, 1330
BsaWI WCCGGW 2 cut(s) 1234, 1382
BsaXI ACNNNNNCTCC 2 cut(s) 429, 459
Bsc4I CCNNNNNNNGG 4 cut(s) 659, 1054, 1336, 1337
Bse118I RCCGGY 1 cut(s) 1382
Bse1I ACTGG 1 cut(s) 1393
BseBI CCWGG 3 cut(s) 94, 401, 1332
BseDI CCNNGG 5 cut(s) 15, 92, 93, 1048, 1330
BseGI GGATG 4 cut(s) 74, 280, 351, 1044
BseLI CCNNNNNNNGG 4 cut(s) 659, 1054, 1336, 1337
BseMII CTCAG 5 cut(s) 276, 426, 852, 1018, 1195
BseNI ACTGG 1 cut(s) 1393
BseRI GAGGAG 3 cut(s) 70, 73, 257
BseSI GKGCMC 1 cut(s) 100
BseXI GCAGC 1 cut(s) 1241
BseYI CCCAGC 1 cut(s) 180
BshFI GGCC 2 cut(s) 98, 717
BshTI ACCGGT 1 cut(s) 1382
BsiHKCI CYCGRG 1 cut(s) 654
BsiSI CCGG 2 cut(s) 1235, 1383
BslFI GGGAC 1 cut(s) 75
BslI CCNNNNNNNGG 4 cut(s) 659, 1054, 1336, 1337
BsmAI GTCTC 1 cut(s) 1373
BsmFI GGGAC 1 cut(s) 75
BsmI GAATGC 2 cut(s) 789, 1003
BsnI GGCC 2 cut(s) 98, 717
Bso31I GGTCTC 1 cut(s) 1373
BsoBI CYCGRG 1 cut(s) 654
Bsp120I GGGCCC 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 100
Bsp143I GATC 9 cut(s) 171, 190, 451, 466, 724, 920, 1129, 1326, 1351
BspACI CCGC 3 cut(s) 393, 1111, 1250
BspANI GGCC 2 cut(s) 98, 717
BspCNI CTCAG 5 cut(s) 277, 425, 851, 1017, 1194
BspHI TCATGA 1 cut(s) 471
BspLI GGNNCC 2 cut(s) 98, 99
BspPI GGATC 4 cut(s) 446, 928, 1124, 1321
BspTNI GGTCTC 1 cut(s) 1373
BsrBI CCGCTC 1 cut(s) 395
BsrFI RCCGGY 1 cut(s) 1382
BsrI ACTGG 1 cut(s) 1393
BssAI RCCGGY 1 cut(s) 1382
BssECI CCNNGG 5 cut(s) 15, 92, 93, 1048, 1330
BssMI GATC 9 cut(s) 171, 190, 451, 466, 724, 920, 1129, 1326, 1351
BssSI CACGAG 1 cut(s) 456
Bst2BI CACGAG 1 cut(s) 456
Bst2UI CCWGG 3 cut(s) 94, 401, 1332
Bst4CI ACNGT 6 cut(s) 160, 259, 541, 932, 1064, 1074
Bst6I CTCTTC 1 cut(s) 1253
BstC8I GCNNGC 1 cut(s) 397
BstDEI CTNAG 6 cut(s) 105, 285, 412, 838, 1004, 1181
BstDSI CCRYGG 2 cut(s) 15, 1048
BstF5I GGATG 4 cut(s) 74, 280, 351, 1044
BstKTI GATC 9 cut(s) 174, 193, 454, 469, 727, 923, 1132, 1329, 1354
BstMAI GTCTC 1 cut(s) 1373
BstMBI GATC 9 cut(s) 171, 190, 451, 466, 724, 920, 1129, 1326, 1351
BstMWI GCNNNNNNNGC 2 cut(s) 1007, 1163
BstNI CCWGG 3 cut(s) 94, 401, 1332
BstNSI RCATGY 2 cut(s) 1014, 1250
BstSCI CCNGG 3 cut(s) 92, 399, 1330
BstSFI CTRYAG 2 cut(s) 156, 540
BstSLI GKGCMC 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 1241
BstV2I GAAGAC 2 cut(s) 260, 1134
BstX2I RGATCY 1 cut(s) 920
BstYI RGATCY 1 cut(s) 920
BsuRI GGCC 2 cut(s) 98, 717
BtgI CCRYGG 2 cut(s) 15, 1048
BtsCI GGATG 4 cut(s) 74, 280, 351, 1044
BtsIMutI CAGTG 3 cut(s) 165, 937, 1069
Cac8I GCNNGC 1 cut(s) 397
CaiI CAGNNNCTG 1 cut(s) 503
CciI TCATGA 1 cut(s) 471
Cfr10I RCCGGY 1 cut(s) 1382
Cfr13I GGNCC 2 cut(s) 96, 97
Csp6I GTAC 4 cut(s) 509, 1193, 1365, 1386
CspAI ACCGGT 1 cut(s) 1382
CviQI GTAC 4 cut(s) 509, 1193, 1365, 1386
DdeI CTNAG 6 cut(s) 105, 285, 412, 838, 1004, 1181
DpnI GATC 9 cut(s) 173, 192, 453, 468, 726, 922, 1131, 1328, 1353
DpnII GATC 9 cut(s) 171, 190, 451, 466, 724, 920, 1129, 1326, 1351
EaeI YGGCCR 1 cut(s) 715
Eam1104I CTCTTC 1 cut(s) 1253
EarI CTCTTC 1 cut(s) 1253
Eco24I GRGCYC 1 cut(s) 100
Eco31I GGTCTC 1 cut(s) 1373
Eco57I CTGAAG 2 cut(s) 30, 1128
Eco88I CYCGRG 1 cut(s) 654
EcoO109I RGGNCCY 2 cut(s) 96, 97
EcoRI GAATTC 2 cut(s) 525, 611
EcoRII CCWGG 3 cut(s) 92, 399, 1330
EcoT22I ATGCAT 2 cut(s) 76, 789
EcoT38I GRGCYC 1 cut(s) 100
FalI AAGNNNNNCTT 6 cut(s) 98, 130, 423, 455, 809, 841
FaqI GGGAC 1 cut(s) 75
FauI CCCGC 1 cut(s) 400
FbaI TGATCA 2 cut(s) 171, 190
FblI GTMKAC 2 cut(s) 492, 1069
Fnu4HI GCNGC 2 cut(s) 1111, 1230
FokI GGATG 4 cut(s) 61, 267, 338, 1031
FriOI GRGCYC 1 cut(s) 100
Fsp4HI GCNGC 2 cut(s) 1111, 1230
FspBI CTAG 4 cut(s) 87, 519, 600, 875
GluI GCNGC 2 cut(s) 1111, 1230
GsaI CCCAGC 1 cut(s) 184
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 2 cut(s) 98, 717
HapII CCGG 2 cut(s) 1235, 1383
HincII GTYRAC 3 cut(s) 406, 493, 1070
HindII GTYRAC 3 cut(s) 406, 493, 1070
HindIII AAGCTT 2 cut(s) 332, 710
HinfI GANTC 5 cut(s) 5, 218, 287, 500, 1199
HpaI GTTAAC 1 cut(s) 406
HpaII CCGG 2 cut(s) 1235, 1383
Hpy166II GTNNAC 4 cut(s) 406, 493, 1070, 1193
Hpy188I TCNGA 8 cut(s) 10, 415, 505, 774, 841, 1007, 1034, 1291
Hpy188III TCNNGA 6 cut(s) 147, 215, 284, 472, 592, 1146
Hpy8I GTNNAC 4 cut(s) 406, 493, 1070, 1193
Hpy99I CGWCG 1 cut(s) 494
HpyAV CCTTC 2 cut(s) 425, 898
HpyCH4III ACNGT 6 cut(s) 160, 259, 541, 932, 1064, 1074
HpyCH4IV ACGT 1 cut(s) 532
HpyCH4V TGCA 7 cut(s) 74, 143, 165, 262, 638, 694, 787
HpyF10VI GCNNNNNNNGC 2 cut(s) 1007, 1163
HpyF3I CTNAG 6 cut(s) 105, 285, 412, 838, 1004, 1181
HpySE526I ACGT 1 cut(s) 532
Ksp22I TGATCA 2 cut(s) 171, 190
KspAI GTTAAC 1 cut(s) 406
Kzo9I GATC 9 cut(s) 171, 190, 451, 466, 724, 920, 1129, 1326, 1351
LmnI GCTCC 2 cut(s) 189, 865
Lsp1109I GCAGC 1 cut(s) 1241
LweI GCATC 5 cut(s) 48, 83, 152, 360, 793
MaeI CTAG 4 cut(s) 87, 519, 600, 875
MaeII ACGT 1 cut(s) 532
MaeIII GTNAC 2 cut(s) 1058, 1282
MalI GATC 9 cut(s) 173, 192, 453, 468, 726, 922, 1131, 1328, 1353
MbiI CCGCTC 1 cut(s) 395
MboI GATC 9 cut(s) 171, 190, 451, 466, 724, 920, 1129, 1326, 1351
MboII GAAGA 8 cut(s) 15, 265, 478, 875, 1134, 1204, 1270, 1325
MflI RGATCY 1 cut(s) 920
MhlI GDGCHC 1 cut(s) 100
MlsI TGGCCA 1 cut(s) 717
MluCI AATT 6 cut(s) 166, 326, 358, 525, 587, 611
MluNI TGGCCA 1 cut(s) 717
MlyI GAGTC 2 cut(s) 296, 494
MmeI TCCRAC 1 cut(s) 1227
Mox20I TGGCCA 1 cut(s) 717
Mph1103I ATGCAT 2 cut(s) 76, 789
MroXI GAANNNNTTC 1 cut(s) 485
MscI TGGCCA 1 cut(s) 717
MseI TTAA 6 cut(s) 329, 369, 405, 794, 1076, 1218
MslI CAYNNNNRTG 1 cut(s) 476
Msp20I TGGCCA 1 cut(s) 717
MspI CCGG 2 cut(s) 1235, 1383
MspR9I CCNGG 3 cut(s) 94, 401, 1332
Mva1269I GAATGC 2 cut(s) 789, 1003
MvaI CCWGG 3 cut(s) 94, 401, 1332
MwoI GCNNNNNNNGC 2 cut(s) 1007, 1163
NdeII GATC 9 cut(s) 171, 190, 451, 466, 724, 920, 1129, 1326, 1351
NlaIV GGNNCC 2 cut(s) 98, 99
NsiI ATGCAT 2 cut(s) 76, 789
NspI RCATGY 2 cut(s) 1014, 1250
PaeR7I CTCGAG 1 cut(s) 654
PagI TCATGA 1 cut(s) 471
PasI CCCWGGG 1 cut(s) 93
PctI GAATGC 2 cut(s) 789, 1003
PdmI GAANNNNTTC 1 cut(s) 485
PfeI GAWTC 3 cut(s) 5, 218, 1199
PflFI GACNNNGTC 1 cut(s) 827
PinAI ACCGGT 1 cut(s) 1382
PkrI GCNGC 2 cut(s) 1112, 1231
PleI GAGTC 2 cut(s) 295, 494
PpsI GAGTC 2 cut(s) 295, 494
PshBI ATTAAT 1 cut(s) 794
Psp6I CCWGG 3 cut(s) 92, 399, 1330
PspFI CCCAGC 1 cut(s) 180
PspGI CCWGG 3 cut(s) 92, 399, 1330
PspN4I GGNNCC 2 cut(s) 98, 99
PspOMI GGGCCC 1 cut(s) 96
PspPI GGNCC 2 cut(s) 96, 97
PspXI VCTCGAGB 1 cut(s) 654
PstNI CAGNNNCTG 1 cut(s) 503
PsuI RGATCY 1 cut(s) 920
PsyI GACNNNGTC 1 cut(s) 827
RsaI GTAC 4 cut(s) 510, 1194, 1366, 1387
RsaNI GTAC 4 cut(s) 509, 1193, 1365, 1386
RseI CAYNNNNRTG 1 cut(s) 476
SalI GTCGAC 2 cut(s) 491, 1068
SaqAI TTAA 6 cut(s) 329, 369, 405, 794, 1076, 1218
SatI GCNGC 2 cut(s) 1111, 1230
Sau3AI GATC 9 cut(s) 171, 190, 451, 466, 724, 920, 1129, 1326, 1351
Sau96I GGNCC 2 cut(s) 96, 97
SchI GAGTC 2 cut(s) 296, 494
ScrFI CCNGG 3 cut(s) 94, 401, 1332
SduI GDGCHC 1 cut(s) 100
SfaNI GCATC 5 cut(s) 48, 83, 152, 360, 793
SfcI CTRYAG 2 cut(s) 156, 540
Sfr274I CTCGAG 1 cut(s) 654
SlaI CTCGAG 1 cut(s) 654
SmiMI CAYNNNNRTG 1 cut(s) 476
SmlI CTYRAG 2 cut(s) 654, 1105
SmoI CTYRAG 2 cut(s) 654, 1105
Sse9I AATT 6 cut(s) 166, 326, 358, 525, 587, 611
SsiI CCGC 3 cut(s) 393, 1111, 1250
SspMI CTAG 4 cut(s) 87, 519, 600, 875
StyD4I CCNGG 3 cut(s) 92, 399, 1330
TaaI ACNGT 6 cut(s) 160, 259, 541, 932, 1064, 1074
TaiI ACGT 1 cut(s) 535
TaqI TCGA 7 cut(s) 492, 626, 655, 853, 1069, 1128, 1400
TaqII GACCGA 1 cut(s) 858
TasI AATT 6 cut(s) 166, 326, 358, 525, 587, 611
TauI GCSGC 1 cut(s) 1113
TfiI GAWTC 3 cut(s) 5, 218, 1199
Tru1I TTAA 6 cut(s) 329, 369, 405, 794, 1076, 1218
Tru9I TTAA 6 cut(s) 329, 369, 405, 794, 1076, 1218
TscAI CASTG 3 cut(s) 165, 937, 1069
TseI GCWGC 1 cut(s) 1229
TspGWI ACGGA 5 cut(s) 176, 314, 452, 788, 1065
TspRI CASTG 3 cut(s) 165, 937, 1069
Tth111I GACNNNGTC 1 cut(s) 827
VspI ATTAAT 1 cut(s) 794
XapI RAATTY 3 cut(s) 525, 587, 611
XceI RCATGY 2 cut(s) 1014, 1250
XhoI CTCGAG 1 cut(s) 654
XmiI GTMKAC 2 cut(s) 492, 1069
XmnI GAANNNNTTC 1 cut(s) 485
XspI CTAG 4 cut(s) 87, 519, 600, 875
Zsp2I ATGCAT 2 cut(s) 76, 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.