Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010671

Physical Location & Seq

Genomic Coordinates Forward (+)

69333406 .. 69334186

Gene Structure 781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0568200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGATATCGCTCCCTCGGGCAACCAATCCAGTAGTTTTGACTTTTGACAACCGAAGTTTGACTGGAGACATCAACTCAAGATTTCCCCCTACAGAAGTACAACAAGTCGGTTATATGTCCCAAGCCAGAAAAGATGCCCTCTTCTTCGTCATAGCTGATGGCTATACCCTTCTCAACAACTTCAATACTTCTTTCATTGCAGATGCTGAAGCAGCTGAAAGTCCTGGGATTAAGTATTTGGGAAACGAAGTCAGCTATGTCATCGAAAACAGCACAGCTCTAGAGATGGTCTACCGAATCAACATCAGCGGAAGCCCACTTTCACCGAACGAAGACACCGGCATGTACCGGTATTGGGATGCCACCAATGAATTCTACTTGGATGATATAAGTAGAGAATTCAGCGTTTTACCGATAAACACAAGTATTCAACTCAAATTTGACAAGGTATCTGAATACACTGCGCTCGAAGAGGTGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

PRK UPRTase

Protein Analysis

160

Amino Acids

18.03

Weight (kDa)

4.36

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27440 AT3G27440 AT3G27440
fragaria_vesca	FvH4_6g51940
malus_domestica	MD09G1021600.v1.1
prunus_persica	Prupe.3G294700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0173421
rosa_laevigata	RLG00000022188
rosa_multiflora	Rmu_co8519037.1_g000001 Rmu_ssc0000282.1_g000014
rosa_roxburghii	Rroxscaffold_2G00078870
rosa_rugosa	Rorug02G0568200 Rorug02G0568300 Rorug02G0568400 Rorug02G0568500
rosa_samantha	Rh2AG648700 Rh2BG659300 Rh2CG624600 Rh2DG674500
rosa_wichuraiana	Rw2G053250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	291
AciI	CCGC	1 cut(s)	309
AcsI	RAATTY	3 cut(s)	371, 398, 437
AcuI	CTGAAG	1 cut(s)	228
AfaI	GTAC	2 cut(s)	99, 347
AfiI	CCNNNNNNNGG	1 cut(s)	355
AgeI	ACCGGT	1 cut(s)	348
AgsI	TTSAA	2 cut(s)	184, 431
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	4 cut(s)	155, 215, 255, 278
AluI	AGCT	4 cut(s)	155, 215, 255, 278
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	1 cut(s)	60
Alw44I	GTGCAC	1 cut(s)	476
AlwNI	CAGNNNCTG	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	15
ApaLI	GTGCAC	1 cut(s)	476
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	3 cut(s)	371, 398, 437
AsiGI	ACCGGT	1 cut(s)	348
AspLEI	GCGC	1 cut(s)	466
AsuHPI	GGTGA	1 cut(s)	315
AvaI	CYCGRG	1 cut(s)	15
BaeGI	GKGCMC	1 cut(s)	480
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	2 cut(s)	152, 280
BciT130I	CCWGG	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	1 cut(s)	281
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	225
BmeT110I	CYCGRG	1 cut(s)	15
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	3 cut(s)	124, 193, 349
BpiI	GAAGAC	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	14, 224
BsaWI	WCCGGW	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse118I	RCCGGY	2 cut(s)	338, 348
Bse1I	ACTGG	2 cut(s)	29, 67
Bse3DI	GCAATG	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	14, 224
BseGI	GGATG	2 cut(s)	364, 388
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMI	GCAATG	1 cut(s)	195
BseNI	ACTGG	2 cut(s)	29, 67
BseSI	GKGCMC	1 cut(s)	480
BseXI	GCAGC	1 cut(s)	224
BshTI	ACCGGT	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	480
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	339, 349
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	103
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	480
BspACI	CCGC	1 cut(s)	309
BsrDI	GCAATG	1 cut(s)	195
BsrFI	RCCGGY	2 cut(s)	338, 348
BsrI	ACTGG	2 cut(s)	29, 67
BssAI	RCCGGY	2 cut(s)	338, 348
BssECI	CCNNGG	2 cut(s)	14, 224
Bst2UI	CCWGG	1 cut(s)	225
Bst6I	CTCTTC	2 cut(s)	146, 465
BstF5I	GGATG	2 cut(s)	364, 388
BstHHI	GCGC	1 cut(s)	466
BstMAI	GTCTC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	480
BstV1I	GCAGC	1 cut(s)	224
BstV2I	GAAGAC	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	364, 388
BtsI	GCAGTG	1 cut(s)	459
BtsIMutI	CAGTG	2 cut(s)	459, 478
CaiI	CAGNNNCTG	1 cut(s)	206
CfoI	GCGC	1 cut(s)	466
Cfr10I	RCCGGY	2 cut(s)	338, 348
Csp6I	GTAC	2 cut(s)	98, 346
CspAI	ACCGGT	1 cut(s)	348
CviAII	CATG	1 cut(s)	343
CviJI	RGCY	7 cut(s)	125, 155, 162, 215, 255, 278, 315
CviKI_1	RGCY	7 cut(s)	125, 155, 162, 215, 255, 278, 315
CviQI	GTAC	2 cut(s)	98, 346
Eam1104I	CTCTTC	2 cut(s)	146, 465
EarI	CTCTTC	2 cut(s)	146, 465
Eco32I	GATATC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	15
EcoRI	GAATTC	2 cut(s)	371, 398
EcoRII	CCWGG	1 cut(s)	223
EcoRV	GATATC	1 cut(s)	6
FaeI	CATG	1 cut(s)	346
FaiI	YATR	7 cut(s)	114, 116, 152, 165, 258, 344, 389
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	1 cut(s)	342
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	2 cut(s)	371, 395
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	1 cut(s)	281
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	84
HapII	CCGG	2 cut(s)	339, 349
HhaI	GCGC	1 cut(s)	466
Hin1II	CATG	1 cut(s)	346
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HinfI	GANTC	1 cut(s)	297
HpaII	CCGG	2 cut(s)	339, 349
HphI	GGTGA	1 cut(s)	315
Hpy166II	GTNNAC	2 cut(s)	292, 478
Hpy188I	TCNGA	1 cut(s)	454
Hpy188III	TCNNGA	2 cut(s)	78, 281
Hpy8I	GTNNAC	2 cut(s)	292, 478
HpyAV	CCTTC	1 cut(s)	179
HpyCH4V	TGCA	2 cut(s)	200, 478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	346
HspAI	GCGC	1 cut(s)	464
LmnI	GCTCC	1 cut(s)	15
LpnPI	CCDG	7 cut(s)	42, 48, 139, 210, 237, 352, 362
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	3 cut(s)	124, 193, 349
MaeI	CTAG	1 cut(s)	281
MboII	GAAGA	4 cut(s)	133, 136, 344, 482
MhlI	GDGCHC	1 cut(s)	480
MluCI	AATT	3 cut(s)	371, 398, 437
MnlI	CCTC	3 cut(s)	24, 149, 466
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	341
MspA1I	CMGCKG	2 cut(s)	215, 309
MspI	CCGG	2 cut(s)	339, 349
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	212
NlaIII	CATG	1 cut(s)	346
NspI	RCATGY	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	297
PinAI	ACCGGT	1 cut(s)	348
PkrI	GCNGC	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PstNI	CAGNNNCTG	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	2 cut(s)	99, 347
RsaNI	GTAC	2 cut(s)	98, 346
RseI	CAYNNNNRTG	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	1 cut(s)	213
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	480
SetI	ASST	6 cut(s)	157, 217, 257, 280, 450, 477
SfaNI	GCATC	3 cut(s)	124, 193, 349
SfcI	CTRYAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	3 cut(s)	371, 398, 437
SsiI	CCGC	1 cut(s)	309
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	1 cut(s)	223
TaqI	TCGA	2 cut(s)	264, 468
TasI	AATT	3 cut(s)	371, 398, 437
TatI	WGTACW	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	297
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	466
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	184, 384
TspRI	CASTG	1 cut(s)	466
VneI	GTGCAC	1 cut(s)	476
XapI	RAATTY	3 cut(s)	371, 398, 437
XbaI	TCTAGA	1 cut(s)	280
XceI	RCATGY	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	291
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.