Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010671

Physical Location & Seq

Genomic Coordinates Forward (+)

69334446 .. 69335006

Gene Structure 561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0568300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCGAGTCTTGGAACCCAGAAGAAAGGTTTAGTTGATCTGTTTGTTGCACTACAAGCAAATCAAGATGATTCGGAAACTACATTTACCAACGTGATCTTGAATGGGCTCGAAATCTTCAAATTATTTGACTCTAATGGCAATAATATCGATCTAAATCCAAACTCACCACCAGAGGTGACACCACAAGCGCAAATGCAAAAAATTTCAAACAAGTTGACTCCTGTGATTACCATCGTTGCAGGTGTACTTTCCAGCATAATTGTGTTCTTTGTCCTCGGATTTTTAGTCATCAAGCGAAGATGGAAAGCTAAGAACTCCAGCTCCAACAACAGGGCGACGAAGTCTACCATGACCCCTGGATCACCTTTACCTCCTTATTTGTGTCGTTACTTTTCACTGGCAGAGATCAAGGTTGCCACCAAAAGCTTCAATGATACTTTCATTATTGGAGGTGGAGGATTTGACAATGTGTACAAAGGACGCATTGATGGTAGAGCCATTCCAGTTGCAATCAAACAACTAACACAAGAGTCATCCCAGGGTGCCCACGAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

PRK UPRTase

Protein Analysis

186

Amino Acids

20.27

Weight (kDa)

9.41

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27440 AT3G27440 AT3G27440
fragaria_vesca	FvH4_6g51940
malus_domestica	MD09G1021600.v1.1
prunus_persica	Prupe.3G294700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0173421
rosa_laevigata	RLG00000022188
rosa_multiflora	Rmu_co8519037.1_g000001 Rmu_ssc0000282.1_g000014
rosa_roxburghii	Rroxscaffold_2G00078870
rosa_rugosa	Rorug02G0568200 Rorug02G0568300 Rorug02G0568400 Rorug02G0568500
rosa_samantha	Rh2AG648700 Rh2BG659300 Rh2CG624600 Rh2DG674500
rosa_wichuraiana	Rw2G053250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	233
Acc36I	ACCTGC	1 cut(s)	233
AccB1I	GGYRCC	1 cut(s)	545
AccI	GTMKAC	1 cut(s)	347
AclWI	GGATC	1 cut(s)	370
AcsI	RAATTY	1 cut(s)	204
AfaI	GTAC	2 cut(s)	249, 476
AfiI	CCNNNNNNNGG	1 cut(s)	333
AgsI	TTSAA	4 cut(s)	103, 121, 210, 433
AjnI	CCWGG	2 cut(s)	358, 540
AloI	GAACNNNNNNTCC	2 cut(s)	308, 340
AluBI	AGCT	3 cut(s)	311, 324, 429
AluI	AGCT	3 cut(s)	311, 324, 429
AlwI	GGATC	1 cut(s)	370
ApoI	RAATTY	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	193
AsuHPI	GGTGA	3 cut(s)	159, 190, 357
BaeGI	GKGCMC	1 cut(s)	550
BanI	GGYRCC	1 cut(s)	545
BanII	GRGCYC	1 cut(s)	111
BauI	CACGAG	1 cut(s)	551
BccI	CCATC	3 cut(s)	242, 297, 485
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BciT130I	CCWGG	2 cut(s)	360, 542
BfuAI	ACCTGC	1 cut(s)	233
Bme1390I	CCNGG	2 cut(s)	360, 542
BmiI	GGNNCC	2 cut(s)	16, 547
BmrFI	CCNGG	2 cut(s)	360, 542
BpmI	CTGGAG	1 cut(s)	304
Bsa29I	ATCGAT	1 cut(s)	150
BsaBI	GATNNNNATC	2 cut(s)	156, 233
BsaJI	CCNNGG	4 cut(s)	277, 358, 540, 541
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
Bse1I	ACTGG	2 cut(s)	405, 506
Bse8I	GATNNNNATC	2 cut(s)	156, 233
BseBI	CCWGG	2 cut(s)	360, 542
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	4 cut(s)	277, 358, 540, 541
BseGI	GGATG	1 cut(s)	536
BseJI	GATNNNNATC	2 cut(s)	156, 233
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseNI	ACTGG	2 cut(s)	405, 506
BseSI	GKGCMC	1 cut(s)	550
BshNI	GGYRCC	1 cut(s)	545
BshVI	ATCGAT	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	333
Bsp1286I	GDGCHC	2 cut(s)	111, 550
Bsp1407I	TGTACA	1 cut(s)	474
Bsp143I	GATC	5 cut(s)	37, 96, 151, 362, 408
BspDI	ATCGAT	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	16, 547
BspMI	ACCTGC	1 cut(s)	233
BspPI	GGATC	1 cut(s)	370
BspT107I	GGYRCC	1 cut(s)	545
BsrGI	TGTACA	1 cut(s)	474
BsrI	ACTGG	2 cut(s)	405, 506
BssECI	CCNNGG	4 cut(s)	277, 358, 540, 541
BssMI	GATC	5 cut(s)	37, 96, 151, 362, 408
BssSI	CACGAG	1 cut(s)	551
Bst2BI	CACGAG	1 cut(s)	551
Bst2UI	CCWGG	2 cut(s)	360, 542
BstAUI	TGTACA	1 cut(s)	474
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	536
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	5 cut(s)	40, 99, 154, 365, 411
BstMBI	GATC	5 cut(s)	37, 96, 151, 362, 408
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	2 cut(s)	360, 542
BstSCI	CCNGG	2 cut(s)	358, 540
BstSLI	GKGCMC	1 cut(s)	550
Bsu15I	ATCGAT	1 cut(s)	150
BsuTUI	ATCGAT	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	536
BtsIMutI	CAGTG	1 cut(s)	398
BveI	ACCTGC	1 cut(s)	233
CfoI	GCGC	1 cut(s)	193
ClaI	ATCGAT	1 cut(s)	150
CseI	GACGC	1 cut(s)	492
Csp6I	GTAC	2 cut(s)	248, 475
CviAII	CATG	1 cut(s)	352
CviJI	RGCY	5 cut(s)	109, 311, 324, 429, 500
CviKI_1	RGCY	5 cut(s)	109, 311, 324, 429, 500
CviQI	GTAC	2 cut(s)	248, 475
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	5 cut(s)	39, 98, 153, 364, 410
DpnII	GATC	5 cut(s)	37, 96, 151, 362, 408
Eco24I	GRGCYC	1 cut(s)	111
EcoRII	CCWGG	2 cut(s)	358, 540
EcoT38I	GRGCYC	1 cut(s)	111
FaeI	CATG	1 cut(s)	355
FaiI	YATR	2 cut(s)	260, 353
FatI	CATG	1 cut(s)	351
FblI	GTMKAC	1 cut(s)	347
FokI	GGATG	1 cut(s)	523
FriOI	GRGCYC	1 cut(s)	111
GlaI	GCGC	1 cut(s)	192
GsuI	CTGGAG	1 cut(s)	304
HgaI	GACGC	1 cut(s)	492
HhaI	GCGC	1 cut(s)	193
Hin1II	CATG	1 cut(s)	355
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HindIII	AAGCTT	1 cut(s)	427
HinfI	GANTC	5 cut(s)	7, 71, 131, 220, 533
HphI	GGTGA	3 cut(s)	159, 190, 357
Hpy166II	GTNNAC	4 cut(s)	219, 248, 348, 475
Hpy188I	TCNGA	2 cut(s)	76, 281
Hpy188III	TCNNGA	2 cut(s)	65, 100
Hpy8I	GTNNAC	4 cut(s)	219, 248, 348, 475
Hpy99I	CGWCG	1 cut(s)	343
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	4 cut(s)	50, 199, 242, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	355
HspAI	GCGC	1 cut(s)	191
Kzo9I	GATC	5 cut(s)	37, 96, 151, 362, 408
LmnI	GCTCC	1 cut(s)	329
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	178, 389
MalI	GATC	5 cut(s)	39, 98, 153, 364, 410
MboI	GATC	5 cut(s)	37, 96, 151, 362, 408
MboII	GAAGA	3 cut(s)	34, 109, 312
MhlI	GDGCHC	2 cut(s)	111, 550
MluCI	AATT	3 cut(s)	122, 204, 261
MlyI	GAGTC	4 cut(s)	16, 125, 214, 542
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	5 cut(s)	169, 287, 384, 446, 452
MslI	CAYNNNNRTG	1 cut(s)	263
MspR9I	CCNGG	2 cut(s)	360, 542
MvaI	CCWGG	2 cut(s)	360, 542
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	5 cut(s)	37, 96, 151, 362, 408
NlaIII	CATG	1 cut(s)	355
NlaIV	GGNNCC	2 cut(s)	16, 547
NmuCI	GTSAC	1 cut(s)	178
PaqCI	CACCTGC	1 cut(s)	233
PasI	CCCWGGG	1 cut(s)	541
PfeI	GAWTC	1 cut(s)	71
PflFI	GACNNNGTC	1 cut(s)	343
PleI	GAGTC	4 cut(s)	15, 125, 214, 541
PpsI	GAGTC	4 cut(s)	15, 125, 214, 541
Psp6I	CCWGG	2 cut(s)	358, 540
PspGI	CCWGG	2 cut(s)	358, 540
PspN4I	GGNNCC	2 cut(s)	16, 547
PsyI	GACNNNGTC	1 cut(s)	343
RsaI	GTAC	2 cut(s)	249, 476
RsaNI	GTAC	2 cut(s)	248, 475
RseI	CAYNNNNRTG	1 cut(s)	263
Sau3AI	GATC	5 cut(s)	37, 96, 151, 362, 408
SchI	GAGTC	4 cut(s)	16, 125, 214, 542
ScrFI	CCNGG	2 cut(s)	360, 542
SduI	GDGCHC	2 cut(s)	111, 550
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	3 cut(s)	122, 204, 261
StyD4I	CCNGG	2 cut(s)	358, 540
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	2 cut(s)	111, 150
TasI	AATT	3 cut(s)	122, 204, 261
TatI	WGTACW	2 cut(s)	247, 474
TfiI	GAWTC	1 cut(s)	71
TscAI	CASTG	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	433
TspRI	CASTG	1 cut(s)	405
Tth111I	GACNNNGTC	1 cut(s)	343
XapI	RAATTY	1 cut(s)	204
XmiI	GTMKAC	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.