Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8519037.1

Orthogroup ID

OG0010671

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 973

Gene Structure 973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8519037.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 509 bp

gatctatatacagtggagttgttttctgtaaaaggttgtgtggtgtttctgttattagaagtggagaaagcatggagaatgcgctcagagcatgttgtaagggaataaaaatcggaaaaatcctcatccacggagagggtaacagtggtcgacagttaatctatgagaagctaccgaaagacatctcaagccgccatgtcttattcctcgatcctgttctgtcttcaggaaactctgccatcaaagctatatctctgctactcagtaagggtgtaccagaatccaacatcatcttccttaaccttatagcagcaccggagggaatacatgcggttttgaagagatttccaatgctaaaacttgttacttcagagattgacttatctttgaatgaagatttgcgtgtgatcccaggaatgggagagtttggagatcgttattttggtacagatagtaatgagaccggttctggttctagttcgagttcaagctcaaagacacctaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

PRK UPRTase

Protein Analysis

168

Amino Acids

17.98

Weight (kDa)

8.93

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27440 AT3G27440 AT3G27440
fragaria_vesca	FvH4_6g51940
malus_domestica	MD09G1021600.v1.1
prunus_persica	Prupe.3G294700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0173421
rosa_laevigata	RLG00000022188
rosa_multiflora	Rmu_co8519037.1_g000001 Rmu_ssc0000282.1_g000014
rosa_roxburghii	Rroxscaffold_2G00078870
rosa_rugosa	Rorug02G0568200 Rorug02G0568300 Rorug02G0568400 Rorug02G0568500
rosa_samantha	Rh2AG648700 Rh2BG659300 Rh2CG624600 Rh2DG674500
rosa_wichuraiana	Rw2G053250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	150
AciI	CCGC	2 cut(s)	192, 331
AclWI	GGATC	2 cut(s)	205, 402
AcuI	CTGAAG	2 cut(s)	209, 353
AfaI	GTAC	2 cut(s)	275, 447
AfiI	CCNNNNNNNGG	3 cut(s)	135, 417, 418
AgeI	ACCGGT	1 cut(s)	463
AgsI	TTSAA	3 cut(s)	339, 390, 488
AjnI	CCWGG	1 cut(s)	411
AjuI	GAANNNNNNNTTGG	2 cut(s)	277, 309
AluBI	AGCT	3 cut(s)	171, 247, 491
AluI	AGCT	3 cut(s)	171, 247, 491
Alw26I	GTCTC	1 cut(s)	454
AlwI	GGATC	2 cut(s)	205, 402
ApeKI	GCWGC	1 cut(s)	310
AsiGI	ACCGGT	1 cut(s)	463
AspLEI	GCGC	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	1 cut(s)	247
BciT130I	CCWGG	1 cut(s)	413
BcoDI	GTCTC	1 cut(s)	454
BfaI	CTAG	1 cut(s)	476
BisI	GCNGC	2 cut(s)	192, 311
BlsI	GCNGC	2 cut(s)	193, 312
Bme1390I	CCNGG	1 cut(s)	413
BmrFI	CCNGG	1 cut(s)	413
BpiI	GAAGAC	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	454
BsaJI	CCNNGG	2 cut(s)	129, 411
BsaWI	WCCGGW	2 cut(s)	315, 463
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 417, 418
Bse118I	RCCGGY	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	413
BseDI	CCNNGG	2 cut(s)	129, 411
BseGI	GGATG	1 cut(s)	125
BseLI	CCNNNNNNNGG	3 cut(s)	135, 417, 418
BseMII	CTCAG	2 cut(s)	99, 276
BseXI	GCAGC	1 cut(s)	322
BshTI	ACCGGT	1 cut(s)	463
BsiSI	CCGG	2 cut(s)	316, 464
BslI	CCNNNNNNNGG	3 cut(s)	135, 417, 418
BsmAI	GTCTC	1 cut(s)	454
BsmI	GAATGC	1 cut(s)	84
Bso31I	GGTCTC	1 cut(s)	454
Bsp143I	GATC	3 cut(s)	210, 407, 432
BspACI	CCGC	2 cut(s)	192, 331
BspCNI	CTCAG	2 cut(s)	98, 275
BspPI	GGATC	2 cut(s)	205, 402
BspTNI	GGTCTC	1 cut(s)	454
BsrFI	RCCGGY	1 cut(s)	463
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	2 cut(s)	129, 411
BssMI	GATC	3 cut(s)	210, 407, 432
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	3 cut(s)	13, 145, 155
Bst6I	CTCTTC	1 cut(s)	334
BstDEI	CTNAG	2 cut(s)	85, 262
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	4 cut(s)	4, 213, 410, 435
BstMAI	GTCTC	1 cut(s)	454
BstMBI	GATC	3 cut(s)	210, 407, 432
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 244
BstNI	CCWGG	1 cut(s)	413
BstNSI	RCATGY	2 cut(s)	95, 331
BstSCI	CCNGG	1 cut(s)	411
BstV1I	GCAGC	1 cut(s)	322
BstV2I	GAAGAC	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	125
BtsIMutI	CAGTG	2 cut(s)	18, 150
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	463
Csp6I	GTAC	2 cut(s)	274, 446
CspAI	ACCGGT	1 cut(s)	463
CviAII	CATG	4 cut(s)	72, 92, 196, 328
CviJI	RGCY	4 cut(s)	171, 191, 247, 491
CviKI_1	RGCY	4 cut(s)	171, 191, 247, 491
CviQI	GTAC	2 cut(s)	274, 446
DdeI	CTNAG	2 cut(s)	85, 262
DpnI	GATC	4 cut(s)	3, 212, 409, 434
DpnII	GATC	3 cut(s)	210, 407, 432
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
Eco31I	GGTCTC	1 cut(s)	454
Eco57I	CTGAAG	2 cut(s)	209, 353
EcoRII	CCWGG	1 cut(s)	411
FaeI	CATG	4 cut(s)	75, 95, 199, 331
FaiI	YATR	9 cut(s)	7, 9, 73, 93, 164, 197, 250, 307, 329
FatI	CATG	4 cut(s)	71, 91, 195, 327
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	2 cut(s)	192, 311
FokI	GGATG	1 cut(s)	112
Fsp4HI	GCNGC	2 cut(s)	192, 311
FspBI	CTAG	1 cut(s)	476
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	2 cut(s)	192, 311
HapII	CCGG	2 cut(s)	316, 464
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	4 cut(s)	75, 95, 199, 331
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	1 cut(s)	280
HpaII	CCGG	2 cut(s)	316, 464
Hpy166II	GTNNAC	2 cut(s)	151, 274
Hpy188I	TCNGA	3 cut(s)	88, 115, 372
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	2 cut(s)	151, 274
HpyCH4III	ACNGT	3 cut(s)	13, 145, 155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 244
HpyF3I	CTNAG	2 cut(s)	85, 262
Hsp92II	CATG	4 cut(s)	75, 95, 199, 331
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	210, 407, 432
LpnPI	CCDG	8 cut(s)	212, 227, 290, 329, 398, 425, 455, 477
Lsp1109I	GCAGC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	476
MaeIII	GTNAC	2 cut(s)	139, 363
MalI	GATC	4 cut(s)	3, 212, 409, 434
MboI	GATC	3 cut(s)	210, 407, 432
MboII	GAAGA	4 cut(s)	215, 285, 351, 406
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	4 cut(s)	129, 133, 217, 312
MseI	TTAA	2 cut(s)	157, 299
MspI	CCGG	2 cut(s)	316, 464
MspR9I	CCNGG	1 cut(s)	413
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	413
MwoI	GCNNNNNNNGC	2 cut(s)	88, 244
NdeII	GATC	3 cut(s)	210, 407, 432
NlaIII	CATG	4 cut(s)	75, 95, 199, 331
NspI	RCATGY	2 cut(s)	95, 331
PctI	GAATGC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	280
PinAI	ACCGGT	1 cut(s)	463
PkrI	GCNGC	2 cut(s)	193, 312
Psp6I	CCWGG	1 cut(s)	411
PspGI	CCWGG	1 cut(s)	411
RsaI	GTAC	2 cut(s)	275, 447
RsaNI	GTAC	2 cut(s)	274, 446
SalI	GTCGAC	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	157, 299
SatI	GCNGC	2 cut(s)	192, 311
Sau3AI	GATC	3 cut(s)	210, 407, 432
ScrFI	CCNGG	1 cut(s)	413
SetI	ASST	6 cut(s)	37, 173, 249, 305, 493, 504
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
SsiI	CCGC	2 cut(s)	192, 331
SspMI	CTAG	1 cut(s)	476
StyD4I	CCNGG	1 cut(s)	411
TaaI	ACNGT	3 cut(s)	13, 145, 155
TaqI	TCGA	3 cut(s)	150, 209, 481
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	2 cut(s)	157, 299
Tru9I	TTAA	2 cut(s)	157, 299
TscAI	CASTG	2 cut(s)	18, 150
TseI	GCWGC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	407
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	2 cut(s)	18, 150
XceI	RCATGY	2 cut(s)	95, 331
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.