Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010671

Physical Location & Seq

Genomic Coordinates Forward (+)

2035965 .. 2039321

Gene Structure 3357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00078870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGATTCTGAAGCCGTGGCTTCTTCATTAAGCATTGGCATCAAGCAACATCTTTCTCTCCAATCTAATAATGCATCCTCCTCCTCTAGTCCCAGAGCCCCAACTAAGCAATCCTTTTTCATTGGTGTTGCTGGAGGAACTGCATCTGGAAAAACTACAGTGTGCAATATGATCATCTCCCAACTCCGTGATCAGCGTGTTGTTTTAGTAAATCAAGATTCATTTTATCACTCCCTGAATGAGGAGAAGTTGAAGACGGTGCATGAATACAACTTTGACCATCCTGAGTCCTTTGATACGGAGTTGTTGCTTTCTTGTATGGAGAAATTAAAGCTTGGACAGGCAGTCAGCATCCCAAATTATGATTTTAAGACCCATCAAAGCATAGAACCCGCTCGCCAGGTTAACCCCTCAGACATTATCATTTTAGAAGGAATACTTGTTCTTCATGATCCTCGTGTCCGTGATCTCATGAACATGAAAATCTTCGTTGACACAGGTTATCTTTGTCTTTTTGTTCTTGAATGTGAAGCTCATGACCATTGTACAGTGTATACCAAATTCGTGAAGCCTAGTTTTGATGAATTCATATTGCCCTCGAAGAAGTATGCAGATATAATCATTCCTCGAGGTGGAGATAATGATGTTGCAATTGACTTGATAGTACAACATATTCATACAAAGCTTGGCCAACATGATCTGTGTAAAATATATCCAAATCTTTTCCTTATCTTTTCCACATTTCAGGTGGTGGAGCATGGGCTAGGTCATCTTCCCTTCCAAGAACAACAGATTATTACCCCAACAGGATCTATATACAGTGGAGTTGTTTTCTGTAAAAGGTTGTGTGGTGTTTCTGTTATTAGAAGTGGAGAAAGCATGGAGAATGCACTCAGAGCATGTTGTAAGGGAATAAAAATCGGAAAAATCCTCATCCACGGAGAGGGTAACAGTGGTCGACAGTTAATCTATGAGAAGCTACCGAAAGACATCTCAAGCCGCCATGTCTTATTCCTCGATCCTGTTCTGTCTTCAGGAAACTCTGCCATCAAAGCTATATCTCTGCTACTCAGTAAGGGTGTACCAGAATCCAACATCATCTTCCTTAACCTTATAGCAGCACCGGAGGGAATACATGCGGTTTTGAAGAGATTTCCACTGCTAAAACTTGTTACATCAGAGATCGACTTATCTTTGAATGAAGATTTGCGTGTGATCCCAGGAATGGGAGAGTTTGGAGATCGTTATTTTGGTACAGATAGTAATGAGACCGGTTCTGGTTCAAGTTCGAGTTCAAGCTCAAAGACACCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

PRK UPRTase

Protein Analysis

438

Amino Acids

48.22

Weight (kDa)

6.35

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRK	PF00485	40 - 166	5.1e-25	Phosphoribulokinase / Uridine kinase family
UPRTase	PF14681	249 - 419	5.9e-58	Uracil phosphoribosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27440 AT3G27440 AT3G27440
fragaria_vesca	FvH4_6g51940
malus_domestica	MD09G1021600.v1.1
prunus_persica	Prupe.3G294700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0173421
rosa_laevigata	RLG00000022188
rosa_multiflora	Rmu_co8519037.1_g000001 Rmu_ssc0000282.1_g000014
rosa_roxburghii	Rroxscaffold_2G00078870
rosa_rugosa	Rorug02G0568200 Rorug02G0568300 Rorug02G0568400 Rorug02G0568500
rosa_samantha	Rh2AG648700 Rh2BG659300 Rh2CG624600 Rh2DG674500
rosa_wichuraiana	Rw2G053250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	627
AccBSI	CCGCTC	1 cut(s)	395
AccI	GTMKAC	2 cut(s)	554, 958
AciI	CCGC	3 cut(s)	393, 1000, 1139
AclWI	GGATC	4 cut(s)	446, 817, 1013, 1210
AcoI	YGGCCR	1 cut(s)	688
AcsI	RAATTY	2 cut(s)	560, 584
AcuI	CTGAAG	2 cut(s)	30, 1017
AfaI	GTAC	4 cut(s)	547, 666, 1083, 1255
AfiI	CCNNNNNNNGG	5 cut(s)	241, 632, 943, 1225, 1226
AgeI	ACCGGT	1 cut(s)	1271
AgsI	TTSAA	6 cut(s)	253, 524, 1147, 1198, 1284, 1296
AhdI	GACNNNNNGTC	1 cut(s)	344
AjnI	CCWGG	2 cut(s)	399, 1219
AjuI	GAANNNNNNNTTGG	2 cut(s)	1085, 1117
AloI	GAACNNNNNNTCC	2 cut(s)	426, 458
AluBI	AGCT	6 cut(s)	334, 533, 685, 979, 1055, 1299
AluI	AGCT	6 cut(s)	334, 533, 685, 979, 1055, 1299
Alw26I	GTCTC	1 cut(s)	1262
AlwI	GGATC	4 cut(s)	446, 817, 1013, 1210
Ama87I	CYCGRG	1 cut(s)	627
AoxI	GGCC	1 cut(s)	688
ApeKI	GCWGC	1 cut(s)	1118
ApoI	RAATTY	2 cut(s)	560, 584
AsiGI	ACCGGT	1 cut(s)	1271
Asp700I	GAANNNNTTC	1 cut(s)	485
AvaI	CYCGRG	1 cut(s)	627
BalI	TGGCCA	1 cut(s)	690
BanII	GRGCYC	1 cut(s)	100
BauI	CACGAG	1 cut(s)	456
BbsI	GAAGAC	2 cut(s)	260, 1023
BbvI	GCAGC	1 cut(s)	1130
BccI	CCATC	3 cut(s)	288, 384, 1055
BciT130I	CCWGG	2 cut(s)	401, 1221
BclI	TGATCA	2 cut(s)	171, 190
BcoDI	GTCTC	1 cut(s)	1262
BfaI	CTAG	3 cut(s)	87, 573, 764
BfmI	CTRYAG	1 cut(s)	156
BisI	GCNGC	2 cut(s)	1000, 1119
BlsI	GCNGC	2 cut(s)	1001, 1120
Bme1390I	CCNGG	2 cut(s)	401, 1221
BmeRI	GACNNNNNGTC	1 cut(s)	344
BmeT110I	CYCGRG	1 cut(s)	627
BmrFI	CCNGG	2 cut(s)	401, 1221
BmsI	GCATC	4 cut(s)	48, 83, 152, 360
BpiI	GAAGAC	2 cut(s)	260, 1023
BpmI	CTGGAG	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	979
BsaI	GGTCTC	1 cut(s)	1262
BsaJI	CCNNGG	3 cut(s)	15, 937, 1219
BsaWI	WCCGGW	2 cut(s)	1123, 1271
Bsc4I	CCNNNNNNNGG	5 cut(s)	241, 632, 943, 1225, 1226
Bse118I	RCCGGY	1 cut(s)	1271
BseBI	CCWGG	2 cut(s)	401, 1221
BseDI	CCNNGG	3 cut(s)	15, 937, 1219
BseGI	GGATG	4 cut(s)	74, 280, 351, 933
BseLI	CCNNNNNNNGG	5 cut(s)	241, 632, 943, 1225, 1226
BseMII	CTCAG	4 cut(s)	276, 426, 907, 1084
BseRI	GAGGAG	3 cut(s)	70, 73, 257
BseXI	GCAGC	1 cut(s)	1130
BshFI	GGCC	1 cut(s)	690
BshTI	ACCGGT	1 cut(s)	1271
BsiHKCI	CYCGRG	1 cut(s)	627
BsiSI	CCGG	2 cut(s)	1124, 1272
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	5 cut(s)	241, 632, 943, 1225, 1226
BsmAI	GTCTC	1 cut(s)	1262
BsmFI	GGGAC	1 cut(s)	75
BsmI	GAATGC	1 cut(s)	892
BsnI	GGCC	1 cut(s)	690
Bso31I	GGTCTC	1 cut(s)	1262
BsoBI	CYCGRG	1 cut(s)	627
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp1407I	TGTACA	1 cut(s)	545
BspACI	CCGC	3 cut(s)	393, 1000, 1139
BspANI	GGCC	1 cut(s)	690
BspCNI	CTCAG	4 cut(s)	277, 425, 906, 1083
BspHI	TCATGA	3 cut(s)	448, 471, 535
BspPI	GGATC	4 cut(s)	446, 817, 1013, 1210
BspTNI	GGTCTC	1 cut(s)	1262
BsrBI	CCGCTC	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	1271
BsrGI	TGTACA	1 cut(s)	545
BssAI	RCCGGY	1 cut(s)	1271
BssECI	CCNNGG	3 cut(s)	15, 937, 1219
BssNAI	GTATAC	1 cut(s)	555
BssSI	CACGAG	1 cut(s)	456
Bst1107I	GTATAC	1 cut(s)	555
Bst2BI	CACGAG	1 cut(s)	456
Bst2UI	CCWGG	2 cut(s)	401, 1221
Bst4CI	ACNGT	6 cut(s)	160, 259, 550, 821, 953, 963
Bst6I	CTCTTC	1 cut(s)	1142
BstAUI	TGTACA	1 cut(s)	545
BstC8I	GCNNGC	1 cut(s)	397
BstDEI	CTNAG	5 cut(s)	105, 285, 412, 893, 1070
BstDSI	CCRYGG	2 cut(s)	15, 937
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	4 cut(s)	74, 280, 351, 933
BstMAI	GTCTC	1 cut(s)	1262
BstMWI	GCNNNNNNNGC	2 cut(s)	896, 1052
BstNI	CCWGG	2 cut(s)	401, 1221
BstNSI	RCATGY	2 cut(s)	903, 1139
BstSCI	CCNGG	2 cut(s)	399, 1219
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	1130
BstV2I	GAAGAC	2 cut(s)	260, 1023
BstX2I	RGATCY	1 cut(s)	809
BstYI	RGATCY	1 cut(s)	809
BstZ17I	GTATAC	1 cut(s)	555
BsuRI	GGCC	1 cut(s)	690
BtgI	CCRYGG	2 cut(s)	15, 937
BtsCI	GGATG	4 cut(s)	74, 280, 351, 933
BtsI	GCAGTG	1 cut(s)	1157
BtsIMutI	CAGTG	5 cut(s)	165, 555, 826, 958, 1157
Cac8I	GCNNGC	1 cut(s)	397
CciI	TCATGA	3 cut(s)	448, 471, 535
Cfr10I	RCCGGY	1 cut(s)	1271
Csp6I	GTAC	4 cut(s)	546, 665, 1082, 1254
CspAI	ACCGGT	1 cut(s)	1271
CviQI	GTAC	4 cut(s)	546, 665, 1082, 1254
DdeI	CTNAG	5 cut(s)	105, 285, 412, 893, 1070
DriI	GACNNNNNGTC	1 cut(s)	344
EaeI	YGGCCR	1 cut(s)	688
Eam1104I	CTCTTC	1 cut(s)	1142
Eam1105I	GACNNNNNGTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	1142
Eco24I	GRGCYC	1 cut(s)	100
Eco31I	GGTCTC	1 cut(s)	1262
Eco57I	CTGAAG	2 cut(s)	30, 1017
Eco88I	CYCGRG	1 cut(s)	627
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoRI	GAATTC	1 cut(s)	584
EcoRII	CCWGG	2 cut(s)	399, 1219
EcoT22I	ATGCAT	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	100
FalI	AAGNNNNNCTT	4 cut(s)	98, 130, 423, 455
FaqI	GGGAC	1 cut(s)	75
FauI	CCCGC	1 cut(s)	400
FbaI	TGATCA	2 cut(s)	171, 190
FblI	GTMKAC	2 cut(s)	554, 958
Fnu4HI	GCNGC	2 cut(s)	1000, 1119
FokI	GGATG	4 cut(s)	61, 267, 338, 920
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	2 cut(s)	1000, 1119
FspBI	CTAG	3 cut(s)	87, 573, 764
GluI	GCNGC	2 cut(s)	1000, 1119
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	690
HapII	CCGG	2 cut(s)	1124, 1272
HincII	GTYRAC	3 cut(s)	406, 493, 959
HindII	GTYRAC	3 cut(s)	406, 493, 959
HindIII	AAGCTT	2 cut(s)	332, 683
HinfI	GANTC	4 cut(s)	5, 218, 287, 1088
HpaI	GTTAAC	1 cut(s)	406
HpaII	CCGG	2 cut(s)	1124, 1272
Hpy166II	GTNNAC	5 cut(s)	406, 493, 555, 959, 1082
Hpy188I	TCNGA	5 cut(s)	10, 415, 896, 923, 1180
Hpy188III	TCNNGA	9 cut(s)	147, 215, 284, 449, 472, 521, 536, 565, 1035
Hpy8I	GTNNAC	5 cut(s)	406, 493, 555, 959, 1082
HpyAV	CCTTC	2 cut(s)	425, 787
HpyCH4III	ACNGT	6 cut(s)	160, 259, 550, 821, 953, 963
HpyCH4V	TGCA	7 cut(s)	74, 143, 165, 262, 611, 650, 890
HpyF10VI	GCNNNNNNNGC	2 cut(s)	896, 1052
HpyF3I	CTNAG	5 cut(s)	105, 285, 412, 893, 1070
Ksp22I	TGATCA	2 cut(s)	171, 190
KspAI	GTTAAC	1 cut(s)	406
LmnI	GCTCC	1 cut(s)	754
Lsp1109I	GCAGC	1 cut(s)	1130
LweI	GCATC	4 cut(s)	48, 83, 152, 360
MaeI	CTAG	3 cut(s)	87, 573, 764
MaeIII	GTNAC	2 cut(s)	947, 1171
MbiI	CCGCTC	1 cut(s)	395
MfeI	CAATTG	1 cut(s)	651
MflI	RGATCY	1 cut(s)	809
MhlI	GDGCHC	1 cut(s)	100
MlsI	TGGCCA	1 cut(s)	690
MluCI	AATT	5 cut(s)	326, 358, 560, 584, 651
MluNI	TGGCCA	1 cut(s)	690
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	1116
Mox20I	TGGCCA	1 cut(s)	690
Mph1103I	ATGCAT	1 cut(s)	76
MroXI	GAANNNNTTC	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	690
MseI	TTAA	6 cut(s)	29, 329, 369, 405, 965, 1107
MslI	CAYNNNNRTG	1 cut(s)	476
Msp20I	TGGCCA	1 cut(s)	690
MspI	CCGG	2 cut(s)	1124, 1272
MspR9I	CCNGG	2 cut(s)	401, 1221
MunI	CAATTG	1 cut(s)	651
Mva1269I	GAATGC	1 cut(s)	892
MvaI	CCWGG	2 cut(s)	401, 1221
MwoI	GCNNNNNNNGC	2 cut(s)	896, 1052
NsiI	ATGCAT	1 cut(s)	76
NspI	RCATGY	2 cut(s)	903, 1139
PaeR7I	CTCGAG	1 cut(s)	627
PagI	TCATGA	3 cut(s)	448, 471, 535
PctI	GAATGC	1 cut(s)	892
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	3 cut(s)	5, 218, 1088
PinAI	ACCGGT	1 cut(s)	1271
PkrI	GCNGC	2 cut(s)	1001, 1120
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Psp6I	CCWGG	2 cut(s)	399, 1219
PspGI	CCWGG	2 cut(s)	399, 1219
PspXI	VCTCGAGB	1 cut(s)	627
PsuI	RGATCY	1 cut(s)	809
RsaI	GTAC	4 cut(s)	547, 666, 1083, 1255
RsaNI	GTAC	4 cut(s)	546, 665, 1082, 1254
RseI	CAYNNNNRTG	1 cut(s)	476
SalI	GTCGAC	1 cut(s)	957
SaqAI	TTAA	6 cut(s)	29, 329, 369, 405, 965, 1107
SatI	GCNGC	2 cut(s)	1000, 1119
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	2 cut(s)	401, 1221
SduI	GDGCHC	1 cut(s)	100
SfaNI	GCATC	4 cut(s)	48, 83, 152, 360
SfcI	CTRYAG	1 cut(s)	156
Sfr274I	CTCGAG	1 cut(s)	627
SlaI	CTCGAG	1 cut(s)	627
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	2 cut(s)	627, 994
SmoI	CTYRAG	2 cut(s)	627, 994
Sse9I	AATT	5 cut(s)	326, 358, 560, 584, 651
SsiI	CCGC	3 cut(s)	393, 1000, 1139
SspMI	CTAG	3 cut(s)	87, 573, 764
StyD4I	CCNGG	2 cut(s)	399, 1219
TaaI	ACNGT	6 cut(s)	160, 259, 550, 821, 953, 963
TaqI	TCGA	6 cut(s)	599, 628, 958, 1017, 1185, 1289
TasI	AATT	5 cut(s)	326, 358, 560, 584, 651
TatI	WGTACW	2 cut(s)	545, 664
TauI	GCSGC	1 cut(s)	1002
TfiI	GAWTC	3 cut(s)	5, 218, 1088
Tru1I	TTAA	6 cut(s)	29, 329, 369, 405, 965, 1107
Tru9I	TTAA	6 cut(s)	29, 329, 369, 405, 965, 1107
TscAI	CASTG	5 cut(s)	165, 555, 826, 958, 1164
TseI	GCWGC	1 cut(s)	1118
TspGWI	ACGGA	4 cut(s)	176, 314, 452, 954
TspRI	CASTG	5 cut(s)	165, 555, 826, 958, 1164
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	2 cut(s)	560, 584
XceI	RCATGY	2 cut(s)	903, 1139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	745
XhoI	CTCGAG	1 cut(s)	627
XmiI	GTMKAC	2 cut(s)	554, 958
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	3 cut(s)	87, 573, 764
Zsp2I	ATGCAT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.