FvH4_6g51940

Belongs to the uridine kinase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
38408544 .. 38412300
3757 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51940.t1

Sequence Viewer

Length: 1392 bp
ATGGATTCTGAAGCTGCGGCTTCTTCATTGAGCATCGGCATCCAACATCATCTTTCTCTCCAATCTAACAATGGATCCTCCTCTAGTCCCAGAGCCCCAACTAAGCAATCATTCTTCATTGGTGTTGCTGGAGGAACTGCATCCGGAAAAACCACGGTGTGCAATTTGATCATCTCTCAACTCCGTGATCAGCGTGTTGTTTTAGTAAATCAAGATTCATTTTATCACTCCTTGAATGAGGAGAAGTTGAAGAATGTGCATGAATACAACTTTGATCATCCTGAGGCCTTTAATACGGAGTTGTTGCTTTCTTGTATGGAGAAATTAAAGCTTGGACAGACAGTTAGCATCCCAGACTATGATTTTAAGACCCATCAAAGCATAGAACCTACTTGCCAGGTCAAGCCCTCAGACATTATCATTTTAGAAGGAATACTTGTTCTTCATGATCCTCGTGTCCGTGATCTCATGAACATGAAAATCTTCGTTGACACAGACTCTGATGTACGGCTCTCTAGGAGAATTCAGCGTGATACAGTCGAAAGAGGCAGAAATATACAGAATGTACTCGAACAATATACCAAATTCGTGAAGCCTAGTTTTGATGAATTCATATTGCCCTCGAAAAAGTATGCAGATATAATCATTCCTCGAGGTGGAGATAATGATGTTGCAATTGACTTGATAGTACAACATATTCATACAAAGCTTGGCCAACATGATCTGTGTAAAATATATCCAAATCTTTTCCTCATCTTTTCCACATTTCAGATACGAGGAATGCATACATTGATACGTGATGCCCAAACAACAAAGCATGACTTCGTCTTTTATTCCGACCGACTTATTCGCTTGGTTGTGGAGCATGGGCTTGGTCACCTCCCTTTCCAAGAACAACAGATTATTACCCCAACAGGATCTATATACAGTGGAGTTGTTTTCTGTAAAAGATTGTGTGGCGTTTCAGTTATTAGAAGTGGAGAAAGCATGGAGAATGCACTAAGAGCATGTTGTAAAGGAATAAAAATAGGAAAAATTCTCATCCACGGAGAGGGTAACAATGGTCGACAGTTAATCTATGAGAAGCTACCGAAAGATATCTCAAGCCGGCATGTGTTATTCCTCGATCCTGTTCTGTCTTCAGGAAACTCTGCCATCAAAGCTATATCTCTGCTACTCAGTAAGGGTGTACCAGAAGCCAACATCATCTTCCTTAACCTTATAGCAGCACCGGAGGGAATACATGCGGTATGCAAGAGATTTCCAATGCTAAAATTTGTTACATCAGAGATCGACTTATCTTTGAACGAATATTTGCGTGTGATCCCGGGAATGGGAGAATTTGGTGATCGTTATTTTGGCACAGAAAGTAATGAGACCGGTTCTGGTTGA

Protein Analysis

464

Amino Acids

51.74

Weight (kDa)

6.99

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRK PF00485 39 - 225 3.4e-51 Phosphoribulokinase / Uridine kinase family
UPRTase PF14681 254 - 455 1.3e-70 Uracil phosphoribosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 651
AccI GTMKAC 1 cut(s) 1066
AccIII TCCGGA 1 cut(s) 143
AciI CCGC 2 cut(s) 17, 1247
AclWI GGATC 6 cut(s) 69, 82, 443, 925, 1121, 1318
AcoI YGGCCR 1 cut(s) 712
AcsI RAATTY 6 cut(s) 522, 584, 608, 1035, 1274, 1340
AcuI CTGAAG 2 cut(s) 30, 1125
AdeI CACNNNGTG 1 cut(s) 159
AfaI GTAC 4 cut(s) 507, 567, 690, 1191
AfiI CCNNNNNNNGG 4 cut(s) 656, 1051, 1333, 1334
AgeI ACCGGT 1 cut(s) 1379
AgsI TTSAA 3 cut(s) 235, 250, 1306
AjnI CCWGG 1 cut(s) 396
AjuI GAANNNNNNNTTGG 2 cut(s) 1193, 1225
AloI GAACNNNNNNTCC 2 cut(s) 423, 455
AluBI AGCT 5 cut(s) 14, 331, 709, 1087, 1163
AluI AGCT 5 cut(s) 14, 331, 709, 1087, 1163
Alw26I GTCTC 1 cut(s) 1370
AlwI GGATC 6 cut(s) 69, 82, 443, 925, 1121, 1318
AlwNI CAGNNNCTG 1 cut(s) 500
Ama87I CYCGRG 2 cut(s) 651, 1327
Aor13HI TCCGGA 1 cut(s) 143
AoxI GGCC 2 cut(s) 285, 712
ApeKI GCWGC 2 cut(s) 14, 1226
ApoI RAATTY 6 cut(s) 522, 584, 608, 1035, 1274, 1340
AsiGI ACCGGT 1 cut(s) 1379
Asp700I GAANNNNTTC 1 cut(s) 482
AsuC2I CCSGG 2 cut(s) 1328, 1329
AsuHPI GGTGA 2 cut(s) 869, 1358
AvaI CYCGRG 2 cut(s) 651, 1327
AxyI CCTNAGG 1 cut(s) 282
BalI TGGCCA 1 cut(s) 714
BamHI GGATCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 97
BauI CACGAG 1 cut(s) 453
BbsI GAAGAC 1 cut(s) 1131
BbvI GCAGC 1 cut(s) 1238
BccI CCATC 2 cut(s) 381, 1163
BceAI ACGGC 1 cut(s) 524
BciT130I CCWGG 1 cut(s) 398
BclI TGATCA 3 cut(s) 168, 187, 274
BcnI CCSGG 2 cut(s) 1328, 1329
BcoDI GTCTC 1 cut(s) 1370
BfaI CTAG 3 cut(s) 84, 516, 597
BisI GCNGC 3 cut(s) 15, 18, 1227
BlsI GCNGC 3 cut(s) 16, 19, 1228
Bme1390I CCNGG 3 cut(s) 398, 1328, 1329
BmeT110I CYCGRG 2 cut(s) 651, 1327
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 3 cut(s) 398, 1328, 1329
BmsI GCATC 5 cut(s) 42, 48, 149, 357, 790
BpiI GAAGAC 1 cut(s) 1131
BpmI CTGGAG 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 1087
BpuMI CCSGG 2 cut(s) 1328, 1329
BsaAI YACGTR 1 cut(s) 797
BsaI GGTCTC 1 cut(s) 1370
BsaJI CCNNGG 3 cut(s) 153, 1045, 1327
BsaWI WCCGGW 3 cut(s) 143, 1231, 1379
Bsc4I CCNNNNNNNGG 4 cut(s) 656, 1051, 1333, 1334
Bse118I RCCGGY 2 cut(s) 1107, 1379
Bse21I CCTNAGG 1 cut(s) 282
BseAI TCCGGA 1 cut(s) 143
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 3 cut(s) 153, 1045, 1327
BseGI GGATG 5 cut(s) 39, 140, 277, 348, 1041
BseLI CCNNNNNNNGG 4 cut(s) 656, 1051, 1333, 1334
BseMII CTCAG 3 cut(s) 273, 423, 1192
BseRI GAGGAG 2 cut(s) 70, 254
BseXI GCAGC 1 cut(s) 1238
Bsh1285I CGRYCG 1 cut(s) 841
BshFI GGCC 2 cut(s) 287, 714
BshTI ACCGGT 1 cut(s) 1379
BsiEI CGRYCG 1 cut(s) 841
BsiHKCI CYCGRG 2 cut(s) 651, 1327
BsiSI CCGG 5 cut(s) 144, 1108, 1232, 1328, 1380
BslFI GGGAC 1 cut(s) 72
BslI CCNNNNNNNGG 4 cut(s) 656, 1051, 1333, 1334
BsmAI GTCTC 1 cut(s) 1370
BsmFI GGGAC 1 cut(s) 72
BsmI GAATGC 2 cut(s) 786, 1000
BsnI GGCC 2 cut(s) 287, 714
Bso31I GGTCTC 1 cut(s) 1370
BsoBI CYCGRG 2 cut(s) 651, 1327
Bsp1286I GDGCHC 1 cut(s) 97
Bsp13I TCCGGA 1 cut(s) 143
BspACI CCGC 2 cut(s) 17, 1247
BspANI GGCC 2 cut(s) 287, 714
BspCNI CTCAG 3 cut(s) 274, 422, 1191
BspEI TCCGGA 1 cut(s) 143
BspHI TCATGA 2 cut(s) 445, 468
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 6 cut(s) 69, 82, 443, 925, 1121, 1318
BspTNI GGTCTC 1 cut(s) 1370
BsrFI RCCGGY 2 cut(s) 1107, 1379
BssAI RCCGGY 2 cut(s) 1107, 1379
BssECI CCNNGG 3 cut(s) 153, 1045, 1327
BssSI CACGAG 1 cut(s) 453
Bst2BI CACGAG 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 398
Bst4CI ACNGT 5 cut(s) 157, 343, 538, 929, 1071
BstBAI YACGTR 1 cut(s) 797
BstC8I GCNNGC 1 cut(s) 1109
BstDEI CTNAG 5 cut(s) 102, 282, 409, 1001, 1178
BstDSI CCRYGG 2 cut(s) 153, 1045
BstEII GGTNACC 1 cut(s) 875
BstF5I GGATG 5 cut(s) 39, 140, 277, 348, 1041
BstMAI GTCTC 1 cut(s) 1370
BstMCI CGRYCG 1 cut(s) 841
BstMWI GCNNNNNNNGC 2 cut(s) 1004, 1160
BstNI CCWGG 1 cut(s) 398
BstNSI RCATGY 3 cut(s) 1011, 1115, 1247
BstPI GGTNACC 1 cut(s) 875
BstSCI CCNGG 3 cut(s) 396, 1326, 1327
BstV1I GCAGC 1 cut(s) 1238
BstV2I GAAGAC 1 cut(s) 1131
BstX2I RGATCY 2 cut(s) 74, 917
BstYI RGATCY 2 cut(s) 74, 917
Bsu36I CCTNAGG 1 cut(s) 282
BsuRI GGCC 2 cut(s) 287, 714
BtgI CCRYGG 2 cut(s) 153, 1045
BtsCI GGATG 5 cut(s) 39, 140, 277, 348, 1041
BtsIMutI CAGTG 1 cut(s) 934
Cac8I GCNNGC 1 cut(s) 1109
CaiI CAGNNNCTG 1 cut(s) 500
CciI TCATGA 2 cut(s) 445, 468
Cfr10I RCCGGY 2 cut(s) 1107, 1379
Cfr9I CCCGGG 1 cut(s) 1327
Csp6I GTAC 4 cut(s) 506, 566, 689, 1190
CspAI ACCGGT 1 cut(s) 1379
CviQI GTAC 4 cut(s) 506, 566, 689, 1190
DdeI CTNAG 5 cut(s) 102, 282, 409, 1001, 1178
DraIII CACNNNGTG 1 cut(s) 159
EaeI YGGCCR 1 cut(s) 712
Eco147I AGGCCT 1 cut(s) 287
Eco24I GRGCYC 1 cut(s) 97
Eco31I GGTCTC 1 cut(s) 1370
Eco32I GATATC 1 cut(s) 1099
Eco57I CTGAAG 2 cut(s) 30, 1125
Eco81I CCTNAGG 1 cut(s) 282
Eco88I CYCGRG 2 cut(s) 651, 1327
Eco91I GGTNACC 1 cut(s) 875
EcoO65I GGTNACC 1 cut(s) 875
EcoRI GAATTC 2 cut(s) 522, 608
EcoRII CCWGG 1 cut(s) 396
EcoRV GATATC 1 cut(s) 1099
EcoT22I ATGCAT 1 cut(s) 786
EcoT38I GRGCYC 1 cut(s) 97
FalI AAGNNNNNCTT 4 cut(s) 420, 452, 806, 838
FaqI GGGAC 1 cut(s) 72
FbaI TGATCA 3 cut(s) 168, 187, 274
FblI GTMKAC 1 cut(s) 1066
Fnu4HI GCNGC 3 cut(s) 15, 18, 1227
FokI GGATG 5 cut(s) 26, 127, 264, 335, 1028
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 3 cut(s) 15, 18, 1227
FspBI CTAG 3 cut(s) 84, 516, 597
GluI GCNGC 3 cut(s) 15, 18, 1227
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 2 cut(s) 287, 714
HapII CCGG 5 cut(s) 144, 1108, 1232, 1328, 1380
HincII GTYRAC 2 cut(s) 490, 1067
HindII GTYRAC 2 cut(s) 490, 1067
HindIII AAGCTT 2 cut(s) 329, 707
HinfI GANTC 3 cut(s) 5, 215, 497
HpaII CCGG 5 cut(s) 144, 1108, 1232, 1328, 1380
HphI GGTGA 2 cut(s) 869, 1358
Hpy166II GTNNAC 3 cut(s) 490, 1067, 1190
Hpy188I TCNGA 6 cut(s) 10, 412, 502, 771, 838, 1288
Hpy188III TCNNGA 7 cut(s) 144, 212, 281, 446, 469, 589, 1143
Hpy8I GTNNAC 3 cut(s) 490, 1067, 1190
HpyAV CCTTC 1 cut(s) 422
HpyCH4III ACNGT 5 cut(s) 157, 343, 538, 929, 1071
HpyCH4IV ACGT 1 cut(s) 796
HpyCH4V TGCA 8 cut(s) 140, 162, 259, 635, 674, 784, 998, 1254
HpyF10VI GCNNNNNNNGC 2 cut(s) 1004, 1160
HpyF3I CTNAG 5 cut(s) 102, 282, 409, 1001, 1178
HpySE526I ACGT 1 cut(s) 796
Kpn2I TCCGGA 1 cut(s) 143
KroI GCCGGC 1 cut(s) 1107
KroNI GCCGGC 1 cut(s) 1109
Ksp22I TGATCA 3 cut(s) 168, 187, 274
LmnI GCTCC 1 cut(s) 862
Lsp1109I GCAGC 1 cut(s) 1238
LweI GCATC 5 cut(s) 42, 48, 149, 357, 790
MaeI CTAG 3 cut(s) 84, 516, 597
MaeII ACGT 1 cut(s) 796
MaeIII GTNAC 3 cut(s) 875, 1055, 1279
MboII GAAGA 7 cut(s) 15, 106, 262, 434, 475, 1131, 1201
MfeI CAATTG 1 cut(s) 675
MflI RGATCY 2 cut(s) 74, 917
MhlI GDGCHC 1 cut(s) 97
MlsI TGGCCA 1 cut(s) 714
MluCI AATT 9 cut(s) 163, 323, 522, 584, 608, 675, 1035, 1274, 1340
MluNI TGGCCA 1 cut(s) 714
MlyI GAGTC 1 cut(s) 491
MmeI TCCRAC 2 cut(s) 67, 861
Mox20I TGGCCA 1 cut(s) 714
Mph1103I ATGCAT 1 cut(s) 786
MroI TCCGGA 1 cut(s) 143
MroNI GCCGGC 1 cut(s) 1107
MroXI GAANNNNTTC 1 cut(s) 482
MscI TGGCCA 1 cut(s) 714
MseI TTAA 5 cut(s) 291, 326, 366, 1073, 1215
MslI CAYNNNNRTG 1 cut(s) 473
Msp20I TGGCCA 1 cut(s) 714
MspI CCGG 5 cut(s) 144, 1108, 1232, 1328, 1380
MspR9I CCNGG 3 cut(s) 398, 1328, 1329
MunI CAATTG 1 cut(s) 675
Mva1269I GAATGC 2 cut(s) 786, 1000
MvaI CCWGG 1 cut(s) 398
MwoI GCNNNNNNNGC 2 cut(s) 1004, 1160
NaeI GCCGGC 1 cut(s) 1109
NciI CCSGG 2 cut(s) 1328, 1329
NgoMIV GCCGGC 1 cut(s) 1107
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 875
NsiI ATGCAT 1 cut(s) 786
NspI RCATGY 3 cut(s) 1011, 1115, 1247
PaeR7I CTCGAG 1 cut(s) 651
PagI TCATGA 2 cut(s) 445, 468
PceI AGGCCT 1 cut(s) 287
PctI GAATGC 2 cut(s) 786, 1000
PdiI GCCGGC 1 cut(s) 1109
PdmI GAANNNNTTC 1 cut(s) 482
PfeI GAWTC 2 cut(s) 5, 215
PflFI GACNNNGTC 1 cut(s) 824
PinAI ACCGGT 1 cut(s) 1379
PkrI GCNGC 3 cut(s) 16, 19, 1228
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
Ppu21I YACGTR 1 cut(s) 797
Psp6I CCWGG 1 cut(s) 396
PspEI GGTNACC 1 cut(s) 875
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 1 cut(s) 76
PspXI VCTCGAGB 1 cut(s) 651
PstNI CAGNNNCTG 1 cut(s) 500
PsuI RGATCY 2 cut(s) 74, 917
PsyI GACNNNGTC 1 cut(s) 824
RsaI GTAC 4 cut(s) 507, 567, 690, 1191
RsaNI GTAC 4 cut(s) 506, 566, 689, 1190
RseI CAYNNNNRTG 1 cut(s) 473
SalI GTCGAC 1 cut(s) 1065
SaqAI TTAA 5 cut(s) 291, 326, 366, 1073, 1215
SatI GCNGC 3 cut(s) 15, 18, 1227
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 3 cut(s) 398, 1328, 1329
SduI GDGCHC 1 cut(s) 97
SfaNI GCATC 5 cut(s) 42, 48, 149, 357, 790
Sfr274I CTCGAG 1 cut(s) 651
SlaI CTCGAG 1 cut(s) 651
SmaI CCCGGG 1 cut(s) 1329
SmiMI CAYNNNNRTG 1 cut(s) 473
SmlI CTYRAG 2 cut(s) 651, 1102
SmoI CTYRAG 2 cut(s) 651, 1102
Sse9I AATT 9 cut(s) 163, 323, 522, 584, 608, 675, 1035, 1274, 1340
SseBI AGGCCT 1 cut(s) 287
SsiI CCGC 2 cut(s) 17, 1247
SspI AATATT 1 cut(s) 1313
SspMI CTAG 3 cut(s) 84, 516, 597
StuI AGGCCT 1 cut(s) 287
StyD4I CCNGG 3 cut(s) 396, 1326, 1327
TaaI ACNGT 5 cut(s) 157, 343, 538, 929, 1071
TaiI ACGT 1 cut(s) 799
TaqI TCGA 7 cut(s) 540, 570, 623, 652, 1066, 1125, 1293
TaqII GACCGA 1 cut(s) 855
TasI AATT 9 cut(s) 163, 323, 522, 584, 608, 675, 1035, 1274, 1340
TatI WGTACW 2 cut(s) 565, 688
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 2 cut(s) 5, 215
Tru1I TTAA 5 cut(s) 291, 326, 366, 1073, 1215
Tru9I TTAA 5 cut(s) 291, 326, 366, 1073, 1215
TscAI CASTG 1 cut(s) 934
TseFI GTSAC 1 cut(s) 875
TseI GCWGC 2 cut(s) 14, 1226
Tsp45I GTSAC 1 cut(s) 875
TspGWI ACGGA 4 cut(s) 173, 311, 449, 1062
TspMI CCCGGG 1 cut(s) 1327
TspRI CASTG 1 cut(s) 934
Tth111I GACNNNGTC 1 cut(s) 824
XapI RAATTY 6 cut(s) 522, 584, 608, 1035, 1274, 1340
XceI RCATGY 3 cut(s) 1011, 1115, 1247
XcmI CCANNNNNNNNNTGG 1 cut(s) 68
XhoI CTCGAG 1 cut(s) 651
XmaI CCCGGG 1 cut(s) 1327
XmiI GTMKAC 1 cut(s) 1066
XmnI GAANNNNTTC 1 cut(s) 482
XspI CTAG 3 cut(s) 84, 516, 597
Zsp2I ATGCAT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.