Rw2G053250

Belongs to the uridine kinase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
81056614 .. 81059691
3078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G053250.1

Sequence Viewer

Length: 1389 bp
ATGGATTCTGAAGCCGTGGCGTCTTCATTGAGCATTGGCATCAAACACCATCTCTCTCTCCAATCTAATAATGCATCCTCTAGTCCCAGGGCCCCAACTAAGCAATCCTTTTTCATTGGTGTTGCTGGAGGAACTGCATCTGGAAAAACTACAGTGTGCAATTTGATCATCTCCCAGCTCCGTGATCAGCGTGTTGTTTTAGTAAATCAAGATTCATTTTATCACTCCTTGAATGAGGAGAAGTTGAAGACGGTGCATGAATACAACTTTGACCATCCTGAGTCCTTTGATACGGAGTTGTTGCTTTCTTGTATGGAGAAATTAAAGCTTGGACAGGCAGTTAGCATCCCAAATTATGATTTTAAGACCCATCAAAGCATAGAACCCGCTCGCCAGGTTAACCCCTCAGACATTATCATTTTAGAAGGAATACTTGTTCTCCATGATCCTCGTGTCCGTGATCTCATGAACATGAAAATCTTCGTCGACACAGACTCTGATGTACGGCTCTCTAGGAGAATTCAACGTGATACTGTAGAAAGAGGCAGAAATATACAGAATGTGCTTGAACAATATACCAAATTCGTGAAGCCTAGTTTTGATGAATTCATATTGCCCTCGAAAAAGTATGCAGATATAATCATTCCTCGAGTGCAACATATTCATACAAAGCTTGGCCAACATGATCTGTGTAAAATATATCCAAATCTTTTCCTTATCTTTTCCACATTTCAGATACGAGGAATGCATACATTAATCCGTGATGCCCAAACAACAAAGCATGACTTTGTCTTTTACTCAGACCGACTTATTCGATTGGTTGTGGAGCATGGTCTAGGTCATCTTCCCTTCCAAGAACAACAGATTATTACCCCAACAGGATCTATATACAGTGGAGTTGTTTTCTGTAAAAGGTTGTGTGGTGTTTCTGTTATTAGAAGTGGAGAAAGCATGGAGAATGCGCTCAGAGCATGTTGTAAGGGAATAAAAATCGGAAAAATCCTCATCCACGGAGAGGGTAACAGTGGTCGACAGTTAATCTATGAGAAGTTACCGAAAGACATCTCAAGCCGCCATGTCTTATTCCTCGATCCTGTTCTGTCTTCAGGAAACTCTGCCATCAAAGCTATATCTCTGCTACTTAGTAAGGGTGTACCAGAATCCAACATCATCTTCCTTAACCTTATAGCAGCACCGGAGGGAATTCATGCGGTTTTGAAGAGATTTCCAATGCTAAAACTTGTTACTTCAGAGATTGACTTATCTTTGAATGAAGATTTGCGTGTGATCCCAGGAATGGGAGAGTTTGGAGATCGTTATTTTGGTACTGATAGTAATGAGACCGGTTCTGGTTCAAGTTCGAGATCAAGCTCAAAGACACCTAAATAA

Protein Analysis

462

Amino Acids

51.63

Weight (kDa)

8.69

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRK PF00485 38 - 222 1.3e-49 Phosphoribulokinase / Uridine kinase family
UPRTase PF14681 242 - 443 3.8e-71 Uracil phosphoribosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 389
AccI GTMKAC 2 cut(s) 486, 1030
AciI CCGC 3 cut(s) 387, 1072, 1211
AclWI GGATC 4 cut(s) 440, 889, 1085, 1282
AcoI YGGCCR 1 cut(s) 676
AcsI RAATTY 4 cut(s) 519, 581, 605, 1203
AcuI CTGAAG 3 cut(s) 30, 1089, 1233
AcyI GRCGYC 1 cut(s) 20
AfaI GTAC 3 cut(s) 504, 1155, 1327
AfiI CCNNNNNNNGG 3 cut(s) 1015, 1297, 1298
AgeI ACCGGT 1 cut(s) 1343
AgsI TTSAA 7 cut(s) 232, 247, 524, 569, 1219, 1270, 1356
AjnI CCWGG 3 cut(s) 86, 393, 1291
AjuI GAANNNNNNNTTGG 2 cut(s) 1157, 1189
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 5 cut(s) 178, 328, 673, 1127, 1371
AluI AGCT 5 cut(s) 178, 328, 673, 1127, 1371
Alw26I GTCTC 1 cut(s) 1334
AlwI GGATC 4 cut(s) 440, 889, 1085, 1282
AlwNI CAGNNNCTG 1 cut(s) 497
Ama87I CYCGRG 1 cut(s) 648
AoxI GGCC 2 cut(s) 90, 676
ApaI GGGCCC 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 1190
ApoI RAATTY 4 cut(s) 519, 581, 605, 1203
AseI ATTAAT 1 cut(s) 755
AsiGI ACCGGT 1 cut(s) 1343
Asp700I GAANNNNTTC 1 cut(s) 479
AspLEI GCGC 1 cut(s) 964
AspS9I GGNCC 2 cut(s) 90, 91
AvaI CYCGRG 1 cut(s) 648
BaeGI GKGCMC 1 cut(s) 94
BalI TGGCCA 1 cut(s) 678
BanII GRGCYC 1 cut(s) 94
BauI CACGAG 1 cut(s) 450
BbsI GAAGAC 3 cut(s) 15, 254, 1095
BbvI GCAGC 1 cut(s) 1202
BccI CCATC 4 cut(s) 57, 282, 378, 1127
BceAI ACGGC 1 cut(s) 521
BciT130I CCWGG 3 cut(s) 88, 395, 1293
BclI TGATCA 2 cut(s) 165, 184
BcoDI GTCTC 1 cut(s) 1334
BfaI CTAG 4 cut(s) 81, 513, 594, 836
BfmI CTRYAG 2 cut(s) 150, 534
BisI GCNGC 2 cut(s) 1072, 1191
BlsI GCNGC 2 cut(s) 1073, 1192
Bme1390I CCNGG 3 cut(s) 88, 395, 1293
BmeT110I CYCGRG 1 cut(s) 648
BmgT120I GGNCC 2 cut(s) 90, 91
BmiI GGNNCC 2 cut(s) 92, 93
BmrFI CCNGG 3 cut(s) 88, 395, 1293
BmsI GCATC 5 cut(s) 48, 83, 146, 354, 754
BpiI GAAGAC 3 cut(s) 15, 254, 1095
BpmI CTGGAG 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 1051
BsaHI GRCGYC 1 cut(s) 20
BsaI GGTCTC 1 cut(s) 1334
BsaJI CCNNGG 5 cut(s) 15, 86, 87, 1009, 1291
BsaWI WCCGGW 2 cut(s) 1195, 1343
BsaXI ACNNNNNCTCC 2 cut(s) 423, 453
Bsc4I CCNNNNNNNGG 3 cut(s) 1015, 1297, 1298
Bse118I RCCGGY 1 cut(s) 1343
BseBI CCWGG 3 cut(s) 88, 395, 1293
BseDI CCNNGG 5 cut(s) 15, 86, 87, 1009, 1291
BseGI GGATG 4 cut(s) 74, 274, 345, 1005
BseLI CCNNNNNNNGG 3 cut(s) 1015, 1297, 1298
BseMII CTCAG 4 cut(s) 270, 420, 813, 979
BseRI GAGGAG 1 cut(s) 251
BseSI GKGCMC 1 cut(s) 94
BseXI GCAGC 1 cut(s) 1202
BseYI CCCAGC 1 cut(s) 174
BshFI GGCC 2 cut(s) 92, 678
BshTI ACCGGT 1 cut(s) 1343
BsiHKCI CYCGRG 1 cut(s) 648
BsiSI CCGG 2 cut(s) 1196, 1344
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 3 cut(s) 1015, 1297, 1298
BsmAI GTCTC 1 cut(s) 1334
BsmFI GGGAC 1 cut(s) 69
BsmI GAATGC 2 cut(s) 750, 964
BsnI GGCC 2 cut(s) 92, 678
Bso31I GGTCTC 1 cut(s) 1334
BsoBI CYCGRG 1 cut(s) 648
Bsp120I GGGCCC 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 94
BspACI CCGC 3 cut(s) 387, 1072, 1211
BspANI GGCC 2 cut(s) 92, 678
BspCNI CTCAG 4 cut(s) 271, 419, 812, 978
BspHI TCATGA 1 cut(s) 465
BspLI GGNNCC 2 cut(s) 92, 93
BspPI GGATC 4 cut(s) 440, 889, 1085, 1282
BspTNI GGTCTC 1 cut(s) 1334
BsrBI CCGCTC 1 cut(s) 389
BsrFI RCCGGY 1 cut(s) 1343
BssAI RCCGGY 1 cut(s) 1343
BssECI CCNNGG 5 cut(s) 15, 86, 87, 1009, 1291
BssNI GRCGYC 1 cut(s) 20
BssSI CACGAG 1 cut(s) 450
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 3 cut(s) 88, 395, 1293
Bst4CI ACNGT 6 cut(s) 154, 253, 535, 893, 1025, 1035
Bst6I CTCTTC 1 cut(s) 1214
BstACI GRCGYC 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 6 cut(s) 99, 279, 406, 799, 965, 1142
BstDSI CCRYGG 2 cut(s) 15, 1009
BstF5I GGATG 4 cut(s) 74, 274, 345, 1005
BstHHI GCGC 1 cut(s) 964
BstMAI GTCTC 1 cut(s) 1334
BstMWI GCNNNNNNNGC 2 cut(s) 968, 1124
BstNI CCWGG 3 cut(s) 88, 395, 1293
BstNSI RCATGY 1 cut(s) 975
BstSCI CCNGG 3 cut(s) 86, 393, 1291
BstSFI CTRYAG 2 cut(s) 150, 534
BstSLI GKGCMC 1 cut(s) 94
BstV1I GCAGC 1 cut(s) 1202
BstV2I GAAGAC 3 cut(s) 15, 254, 1095
BstX2I RGATCY 1 cut(s) 881
BstYI RGATCY 1 cut(s) 881
BsuRI GGCC 2 cut(s) 92, 678
BtgI CCRYGG 2 cut(s) 15, 1009
BtsCI GGATG 4 cut(s) 74, 274, 345, 1005
BtsIMutI CAGTG 3 cut(s) 159, 898, 1030
Cac8I GCNNGC 1 cut(s) 391
CaiI CAGNNNCTG 1 cut(s) 497
CciI TCATGA 1 cut(s) 465
CfoI GCGC 1 cut(s) 964
Cfr10I RCCGGY 1 cut(s) 1343
Cfr13I GGNCC 2 cut(s) 90, 91
CseI GACGC 1 cut(s) 9
Csp6I GTAC 3 cut(s) 503, 1154, 1326
CspAI ACCGGT 1 cut(s) 1343
CviQI GTAC 3 cut(s) 503, 1154, 1326
DdeI CTNAG 6 cut(s) 99, 279, 406, 799, 965, 1142
EaeI YGGCCR 1 cut(s) 676
Eam1104I CTCTTC 1 cut(s) 1214
EarI CTCTTC 1 cut(s) 1214
Eco24I GRGCYC 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 1334
Eco57I CTGAAG 3 cut(s) 30, 1089, 1233
Eco88I CYCGRG 1 cut(s) 648
EcoO109I RGGNCCY 2 cut(s) 90, 91
EcoRI GAATTC 3 cut(s) 519, 605, 1203
EcoRII CCWGG 3 cut(s) 86, 393, 1291
EcoT22I ATGCAT 2 cut(s) 76, 750
EcoT38I GRGCYC 1 cut(s) 94
FalI AAGNNNNNCTT 6 cut(s) 92, 124, 417, 449, 770, 802
FaqI GGGAC 1 cut(s) 69
FauI CCCGC 1 cut(s) 394
FbaI TGATCA 2 cut(s) 165, 184
FblI GTMKAC 2 cut(s) 486, 1030
Fnu4HI GCNGC 2 cut(s) 1072, 1191
FokI GGATG 4 cut(s) 61, 261, 332, 992
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 2 cut(s) 1072, 1191
FspBI CTAG 4 cut(s) 81, 513, 594, 836
GlaI GCGC 1 cut(s) 963
GluI GCNGC 2 cut(s) 1072, 1191
GsaI CCCAGC 1 cut(s) 178
GsuI CTGGAG 1 cut(s) 147
HaeIII GGCC 2 cut(s) 92, 678
HapII CCGG 2 cut(s) 1196, 1344
HgaI GACGC 1 cut(s) 9
HhaI GCGC 1 cut(s) 964
Hin1I GRCGYC 1 cut(s) 20
Hin6I GCGC 1 cut(s) 962
HinP1I GCGC 1 cut(s) 962
HincII GTYRAC 3 cut(s) 400, 487, 1031
HindII GTYRAC 3 cut(s) 400, 487, 1031
HindIII AAGCTT 2 cut(s) 326, 671
HinfI GANTC 5 cut(s) 5, 212, 281, 494, 1160
HpaI GTTAAC 1 cut(s) 400
HpaII CCGG 2 cut(s) 1196, 1344
Hpy166II GTNNAC 4 cut(s) 400, 487, 1031, 1154
Hpy188I TCNGA 8 cut(s) 10, 409, 499, 735, 802, 968, 995, 1252
Hpy188III TCNNGA 7 cut(s) 141, 209, 278, 466, 586, 1107, 1362
Hpy8I GTNNAC 4 cut(s) 400, 487, 1031, 1154
Hpy99I CGWCG 1 cut(s) 488
HpyAV CCTTC 2 cut(s) 419, 859
HpyCH4III ACNGT 6 cut(s) 154, 253, 535, 893, 1025, 1035
HpyCH4IV ACGT 1 cut(s) 526
HpyCH4V TGCA 7 cut(s) 74, 137, 159, 256, 632, 655, 748
HpyF10VI GCNNNNNNNGC 2 cut(s) 968, 1124
HpyF3I CTNAG 6 cut(s) 99, 279, 406, 799, 965, 1142
HpySE526I ACGT 1 cut(s) 526
Hsp92I GRCGYC 1 cut(s) 20
HspAI GCGC 1 cut(s) 962
Ksp22I TGATCA 2 cut(s) 165, 184
KspAI GTTAAC 1 cut(s) 400
LmnI GCTCC 2 cut(s) 183, 826
Lsp1109I GCAGC 1 cut(s) 1202
LweI GCATC 5 cut(s) 48, 83, 146, 354, 754
MaeI CTAG 4 cut(s) 81, 513, 594, 836
MaeII ACGT 1 cut(s) 526
MaeIII GTNAC 3 cut(s) 1019, 1050, 1243
MbiI CCGCTC 1 cut(s) 389
MboII GAAGA 8 cut(s) 15, 259, 472, 836, 1095, 1165, 1231, 1286
MflI RGATCY 1 cut(s) 881
MhlI GDGCHC 1 cut(s) 94
MlsI TGGCCA 1 cut(s) 678
MluCI AATT 7 cut(s) 160, 320, 352, 519, 581, 605, 1203
MluNI TGGCCA 1 cut(s) 678
MlyI GAGTC 2 cut(s) 290, 488
MmeI TCCRAC 1 cut(s) 1188
Mox20I TGGCCA 1 cut(s) 678
Mph1103I ATGCAT 2 cut(s) 76, 750
MroXI GAANNNNTTC 1 cut(s) 479
MscI TGGCCA 1 cut(s) 678
MseI TTAA 6 cut(s) 323, 363, 399, 755, 1037, 1179
MslI CAYNNNNRTG 1 cut(s) 470
Msp20I TGGCCA 1 cut(s) 678
MspI CCGG 2 cut(s) 1196, 1344
MspR9I CCNGG 3 cut(s) 88, 395, 1293
Mva1269I GAATGC 2 cut(s) 750, 964
MvaI CCWGG 3 cut(s) 88, 395, 1293
MwoI GCNNNNNNNGC 2 cut(s) 968, 1124
NlaIV GGNNCC 2 cut(s) 92, 93
NsiI ATGCAT 2 cut(s) 76, 750
NspI RCATGY 1 cut(s) 975
PaeR7I CTCGAG 1 cut(s) 648
PagI TCATGA 1 cut(s) 465
PasI CCCWGGG 1 cut(s) 87
PctI GAATGC 2 cut(s) 750, 964
PdmI GAANNNNTTC 1 cut(s) 479
PfeI GAWTC 3 cut(s) 5, 212, 1160
PflFI GACNNNGTC 1 cut(s) 788
PinAI ACCGGT 1 cut(s) 1343
PkrI GCNGC 2 cut(s) 1073, 1192
PleI GAGTC 2 cut(s) 289, 488
PpsI GAGTC 2 cut(s) 289, 488
PshBI ATTAAT 1 cut(s) 755
Psp6I CCWGG 3 cut(s) 86, 393, 1291
PspFI CCCAGC 1 cut(s) 174
PspGI CCWGG 3 cut(s) 86, 393, 1291
PspN4I GGNNCC 2 cut(s) 92, 93
PspOMI GGGCCC 1 cut(s) 90
PspPI GGNCC 2 cut(s) 90, 91
PspXI VCTCGAGB 1 cut(s) 648
PstNI CAGNNNCTG 1 cut(s) 497
PsuI RGATCY 1 cut(s) 881
PsyI GACNNNGTC 1 cut(s) 788
RsaI GTAC 3 cut(s) 504, 1155, 1327
RsaNI GTAC 3 cut(s) 503, 1154, 1326
RseI CAYNNNNRTG 1 cut(s) 470
SalI GTCGAC 2 cut(s) 485, 1029
SaqAI TTAA 6 cut(s) 323, 363, 399, 755, 1037, 1179
SatI GCNGC 2 cut(s) 1072, 1191
Sau96I GGNCC 2 cut(s) 90, 91
SchI GAGTC 2 cut(s) 290, 488
ScrFI CCNGG 3 cut(s) 88, 395, 1293
SduI GDGCHC 1 cut(s) 94
SfaNI GCATC 5 cut(s) 48, 83, 146, 354, 754
SfcI CTRYAG 2 cut(s) 150, 534
Sfr274I CTCGAG 1 cut(s) 648
SlaI CTCGAG 1 cut(s) 648
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 2 cut(s) 648, 1066
SmoI CTYRAG 2 cut(s) 648, 1066
Sse9I AATT 7 cut(s) 160, 320, 352, 519, 581, 605, 1203
SsiI CCGC 3 cut(s) 387, 1072, 1211
SspMI CTAG 4 cut(s) 81, 513, 594, 836
StyD4I CCNGG 3 cut(s) 86, 393, 1291
TaaI ACNGT 6 cut(s) 154, 253, 535, 893, 1025, 1035
TaiI ACGT 1 cut(s) 529
TaqI TCGA 7 cut(s) 486, 620, 649, 814, 1030, 1089, 1361
TaqII GACCGA 1 cut(s) 819
TasI AATT 7 cut(s) 160, 320, 352, 519, 581, 605, 1203
TauI GCSGC 1 cut(s) 1074
TfiI GAWTC 3 cut(s) 5, 212, 1160
Tru1I TTAA 6 cut(s) 323, 363, 399, 755, 1037, 1179
Tru9I TTAA 6 cut(s) 323, 363, 399, 755, 1037, 1179
TscAI CASTG 3 cut(s) 159, 898, 1030
TseI GCWGC 1 cut(s) 1190
TspGWI ACGGA 5 cut(s) 170, 308, 446, 749, 1026
TspRI CASTG 3 cut(s) 159, 898, 1030
Tth111I GACNNNGTC 1 cut(s) 788
VspI ATTAAT 1 cut(s) 755
XapI RAATTY 4 cut(s) 519, 581, 605, 1203
XceI RCATGY 1 cut(s) 975
XhoI CTCGAG 1 cut(s) 648
XmiI GTMKAC 2 cut(s) 486, 1030
XmnI GAANNNNTTC 1 cut(s) 479
XspI CTAG 4 cut(s) 81, 513, 594, 836
Zsp2I ATGCAT 2 cut(s) 76, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.