AT3G28210

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011887
Physical Location & Seq
Forward (+)
10520443 .. 10521796
1354 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G28210.1

Sequence Viewer

Length: 561 bp
ATGGCAGGAGGAGGAACAGAAGCGTTTCCTGATCTTGGAGAGCATTGCCAAGACCCTGATTGCAAATTACTCGATTTTCTCCCTTTTACTTGCGACGGCTGCAAATTGGTGTTTTGTTTGGAGCATAGATCATACAAGTCACATAACTGTCCGAAATCCGATCATGGGAGCAGAACGGTTTCCATCTGTGAAACATGTTCAATAGCGATTGAAACAACTGGTTTTGATGAAAAAGGAATCAAATCTTTGCTTGAGAAACACGAAAGATCCGGAGATTGTGATCCAAACAAGAAAAAGAAACCAACGTGTCCTGTAAAACGTTGCAAAGAGATTCTGACTTTTGCGAATAACCTTACTTGCAAATATTGTGGAGTCAAGTTCTGTTTGAAACACCGGTTTCCGACAGATCATGTCTGTAACAAGAAGATCATTAATACCGCGGGAACAAGCTCGAGGTGGAACGAGAGGTTTATGGAAGCTTTGAGTTTAAGAAACCAGAAAGGGTGTGGAAGAGGGAGCTCTGTTTCATCAAAATCTTCACCATCAGTTAGATCGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010200 GO:0010243 GO:0033993 GO:0042221 GO:0042493 GO:0050896 GO:0097305 GO:1901698 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-AN1

Protein Analysis

186

Amino Acids

20.66

Weight (kDa)

8.84

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-AN1 PF01428 16 - 53 1.4e-12 AN1-like Zinc finger
zf-AN1 PF01428 103 - 142 2.5e-10 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28210 AT3G28210
fragaria_vesca FvH4_6g50080
malus_domestica MD09G1039300.v1.1 MD17G1040300.v1.1
prunus_persica Prupe.3G278700_v2.0.a1
pyrus_communis pycom17g03610
rosa_chinensis RchiOBHm_Chr2g0170351
rosa_laevigata RLG00000021948
rosa_multiflora Rmu_sc0011601.1_g000011 Rmu_sc0012445.1_g000015
rosa_roxburghii Rroxscaffold_2G00081420
rosa_rugosa Rorug02G0548400
rosa_samantha Rh2AG619800 Rh2BG630700 Rh2CG600800 Rh2DG643600
rosa_wichuraiana Rw2G051340 Rw2G051350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 440
AccIII TCCGGA 1 cut(s) 269
AciI CCGC 2 cut(s) 438, 440
AclI AACGTT 1 cut(s) 319
AclWI GGATC 2 cut(s) 261, 275
AfiI CCNNNNNNNGG 2 cut(s) 35, 165
AflIII ACRYGT 2 cut(s) 194, 305
AgeI ACCGGT 1 cut(s) 393
AgsI TTSAA 3 cut(s) 201, 212, 388
AluBI AGCT 3 cut(s) 450, 479, 519
AluI AGCT 3 cut(s) 450, 479, 519
Alw21I GWGCWC 1 cut(s) 521
AlwI GGATC 2 cut(s) 261, 275
Ama87I CYCGRG 1 cut(s) 451
Aor13HI TCCGGA 1 cut(s) 269
ApeKI GCWGC 1 cut(s) 99
AseI ATTAAT 1 cut(s) 432
AsiGI ACCGGT 1 cut(s) 393
Asp700I GAANNNNTTC 2 cut(s) 24, 178
AsuHPI GGTGA 1 cut(s) 531
AvaI CYCGRG 1 cut(s) 451
BanII GRGCYC 1 cut(s) 521
Bbv12I GWGCWC 1 cut(s) 521
BbvI GCAGC 1 cut(s) 86
BccI CCATC 2 cut(s) 191, 550
BceAI ACGGC 1 cut(s) 112
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
BmeT110I CYCGRG 1 cut(s) 451
BpuEI CTTGAG 1 cut(s) 272
BsaBI GATNNNNATC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 438
BsaWI WCCGGW 2 cut(s) 269, 393
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 165
Bse118I RCCGGY 1 cut(s) 393
Bse1I ACTGG 1 cut(s) 223
Bse3DI GCAATG 1 cut(s) 43
Bse8I GATNNNNATC 1 cut(s) 279
BseAI TCCGGA 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 438
BseJI GATNNNNATC 1 cut(s) 279
BseLI CCNNNNNNNGG 2 cut(s) 35, 165
BseMI GCAATG 1 cut(s) 43
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 440
BshTI ACCGGT 1 cut(s) 393
BsiHKAI GWGCWC 1 cut(s) 521
BsiHKCI CYCGRG 1 cut(s) 451
BsiSI CCGG 2 cut(s) 270, 394
BslI CCNNNNNNNGG 2 cut(s) 35, 165
BsoBI CYCGRG 1 cut(s) 451
Bsp1286I GDGCHC 1 cut(s) 521
Bsp13I TCCGGA 1 cut(s) 269
Bsp143I GATC 8 cut(s) 31, 128, 160, 266, 280, 406, 426, 551
BspACI CCGC 2 cut(s) 438, 440
BspEI TCCGGA 1 cut(s) 269
BspFNI CGCG 1 cut(s) 440
BspPI GGATC 2 cut(s) 261, 275
BsrDI GCAATG 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 393
BsrI ACTGG 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 393
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 8 cut(s) 31, 128, 160, 266, 280, 406, 426, 551
Bst4CI ACNGT 2 cut(s) 149, 178
Bst6I CTCTTC 1 cut(s) 505
BstDSI CCRYGG 1 cut(s) 438
BstFNI CGCG 1 cut(s) 440
BstKTI GATC 8 cut(s) 34, 131, 163, 269, 283, 409, 429, 554
BstMBI GATC 8 cut(s) 31, 128, 160, 266, 280, 406, 426, 551
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 198
BstUI CGCG 1 cut(s) 440
BstV1I GCAGC 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
BtgI CCRYGG 1 cut(s) 438
Cfr10I RCCGGY 1 cut(s) 393
Cfr42I CCGCGG 1 cut(s) 441
CspAI ACCGGT 1 cut(s) 393
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
CviAII CATG 3 cut(s) 164, 195, 410
CviJI RGCY 4 cut(s) 99, 450, 479, 519
CviKI_1 RGCY 4 cut(s) 99, 450, 479, 519
DpnI GATC 8 cut(s) 33, 130, 162, 268, 282, 408, 428, 553
DpnII GATC 8 cut(s) 31, 128, 160, 266, 280, 406, 426, 551
Eam1104I CTCTTC 1 cut(s) 505
EarI CTCTTC 1 cut(s) 505
Ecl136II GAGCTC 1 cut(s) 519
Eco24I GRGCYC 1 cut(s) 521
Eco53kI GAGCTC 1 cut(s) 519
Eco88I CYCGRG 1 cut(s) 451
EcoICRI GAGCTC 1 cut(s) 519
EcoT38I GRGCYC 1 cut(s) 521
FaeI CATG 3 cut(s) 167, 198, 413
FaiI YATR 7 cut(s) 126, 133, 144, 165, 196, 411, 473
FatI CATG 3 cut(s) 163, 194, 409
FauI CCCGC 1 cut(s) 433
Fnu4HI GCNGC 1 cut(s) 100
FriOI GRGCYC 1 cut(s) 521
Fsp4HI GCNGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 100
HapII CCGG 2 cut(s) 270, 394
Hin1II CATG 3 cut(s) 167, 198, 413
HindIII AAGCTT 1 cut(s) 477
HinfI GANTC 3 cut(s) 237, 331, 372
HpaII CCGG 2 cut(s) 270, 394
HphI GGTGA 1 cut(s) 531
Hpy188I TCNGA 4 cut(s) 153, 160, 336, 402
Hpy188III TCNNGA 2 cut(s) 29, 270
Hpy99I CGWCG 1 cut(s) 98
HpyCH4III ACNGT 2 cut(s) 149, 178
HpyCH4IV ACGT 2 cut(s) 305, 319
HpyCH4V TGCA 4 cut(s) 63, 102, 324, 360
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
HpySE526I ACGT 2 cut(s) 305, 319
Hsp92II CATG 3 cut(s) 167, 198, 413
Kpn2I TCCGGA 1 cut(s) 269
KspI CCGCGG 1 cut(s) 441
Kzo9I GATC 8 cut(s) 31, 128, 160, 266, 280, 406, 426, 551
LmnI GCTCC 3 cut(s) 121, 168, 516
LpnPI CCDG 7 cut(s) 42, 69, 204, 283, 324, 407, 509
Lsp1109I GCAGC 1 cut(s) 86
MaeII ACGT 2 cut(s) 305, 319
MaeIII GTNAC 2 cut(s) 138, 416
MalI GATC 8 cut(s) 33, 130, 162, 268, 282, 408, 428, 553
MboI GATC 8 cut(s) 31, 128, 160, 266, 280, 406, 426, 551
MboII GAAGA 3 cut(s) 436, 522, 528
MflI RGATCY 1 cut(s) 266
MhlI GDGCHC 1 cut(s) 521
MluCI AATT 2 cut(s) 65, 104
MlyI GAGTC 1 cut(s) 381
MmeI TCCRAC 1 cut(s) 425
MnlI CCTC 4 cut(s) 5, 447, 459, 506
MroI TCCGGA 1 cut(s) 269
MroXI GAANNNNTTC 2 cut(s) 24, 178
MseI TTAA 2 cut(s) 432, 488
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 2 cut(s) 270, 394
MvnI CGCG 1 cut(s) 440
MwoI GCNNNNNNNGC 1 cut(s) 99
NdeII GATC 8 cut(s) 31, 128, 160, 266, 280, 406, 426, 551
NlaIII CATG 3 cut(s) 167, 198, 413
NmuCI GTSAC 1 cut(s) 138
NspI RCATGY 1 cut(s) 198
PaeR7I CTCGAG 1 cut(s) 451
PciI ACATGT 1 cut(s) 194
PdmI GAANNNNTTC 2 cut(s) 24, 178
PfeI GAWTC 2 cut(s) 237, 331
PinAI ACCGGT 1 cut(s) 393
PkrI GCNGC 1 cut(s) 101
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
PscI ACATGT 1 cut(s) 194
PshBI ATTAAT 1 cut(s) 432
Psp124BI GAGCTC 1 cut(s) 521
Psp1406I AACGTT 1 cut(s) 319
PspXI VCTCGAGB 1 cut(s) 451
PsuI RGATCY 1 cut(s) 266
SacI GAGCTC 1 cut(s) 521
SacII CCGCGG 1 cut(s) 441
SaqAI TTAA 2 cut(s) 432, 488
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 8 cut(s) 31, 128, 160, 266, 280, 406, 426, 551
SchI GAGTC 1 cut(s) 381
SduI GDGCHC 1 cut(s) 521
SetI ASST 8 cut(s) 308, 322, 354, 452, 458, 470, 481, 521
Sfr274I CTCGAG 1 cut(s) 451
Sfr303I CCGCGG 1 cut(s) 441
SgrBI CCGCGG 1 cut(s) 441
SlaI CTCGAG 1 cut(s) 451
SmlI CTYRAG 2 cut(s) 251, 451
SmoI CTYRAG 2 cut(s) 251, 451
Sse9I AATT 2 cut(s) 65, 104
SsiI CCGC 2 cut(s) 438, 440
SspI AATATT 1 cut(s) 365
SstI GAGCTC 1 cut(s) 521
TaaI ACNGT 2 cut(s) 149, 178
TaiI ACGT 2 cut(s) 308, 322
TaqI TCGA 2 cut(s) 72, 452
TasI AATT 2 cut(s) 65, 104
TfiI GAWTC 2 cut(s) 237, 331
Tru1I TTAA 2 cut(s) 432, 488
Tru9I TTAA 2 cut(s) 432, 488
TseFI GTSAC 1 cut(s) 138
TseI GCWGC 1 cut(s) 99
Tsp45I GTSAC 1 cut(s) 138
TspDTI ATGAA 2 cut(s) 243, 516
VspI ATTAAT 1 cut(s) 432
XceI RCATGY 1 cut(s) 198
XcmI CCANNNNNNNNNTGG 1 cut(s) 503
XhoI CTCGAG 1 cut(s) 451
XmnI GAANNNNTTC 2 cut(s) 24, 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.