RchiOBHm_Chr2g0170351

Zinc finger AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011887
Physical Location & Seq
Reverse (-)
84283544 .. 84284384
841 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53789

Sequence Viewer

Length: 573 bp
ATGTCAGGAGGAACAGAAGCTTTTCCAGATTTGGGAAGACATTGCCAGCACCCTGATTGCCACCAACTCGATTTCCTCCCTTTCAAATGCGCCGGCTGCCATGACGTGTTCTGCGTCGAACACCGCTCTTACAAGTCCCACGACTGCCCCAAATCCGATCACAACAGCCGGAAAGTGATAATTTGTGAAGTCTGCTCCACCTCCATCGAGACCACCGGCCACGACGGCGAAGAGAGCCAGAAGGTGTTGCTGGATAGGCACAGCAGGTCCGGGGATTGCGACCCGAAAAAGAAGAAGAAGCCCACGTGCCCTGTTAAGAGGTGCAAGGAGGTTCTGACCTTTTCGAATAATAGTACTTGCAAGACTTGCCATTTGAAGGTCTGCCTCAAGCACCGGTTTCCGGCAGACCATGAATGTAAGAAGGATGCGAAGGCGGTGGCCGTGGCGGCGAACAGAGGGGCCTGGAATGGAAAGTTCTTGGCTGCTTTTGCTTCGAGGAATGGGAAAGATTGTGGGAAGAGTGAGAGGGGTTCCAAGTCTCCTCCCAGTACTCCAACAGTTAGGGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010200 GO:0010243 GO:0033993 GO:0042221 GO:0042493 GO:0050896 GO:0097305 GO:1901698 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-AN1

Protein Analysis

190

Amino Acids

21.0

Weight (kDa)

8.99

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-AN1 PF01428 15 - 52 8.8e-11 AN1-like Zinc finger
zf-AN1 PF01428 103 - 144 4.6e-09 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28210 AT3G28210
fragaria_vesca FvH4_6g50080
malus_domestica MD09G1039300.v1.1 MD17G1040300.v1.1
prunus_persica Prupe.3G278700_v2.0.a1
pyrus_communis pycom17g03610
rosa_chinensis RchiOBHm_Chr2g0170351
rosa_laevigata RLG00000021948
rosa_multiflora Rmu_sc0011601.1_g000011 Rmu_sc0012445.1_g000015
rosa_roxburghii Rroxscaffold_2G00081420
rosa_rugosa Rorug02G0548400
rosa_samantha Rh2AG619800 Rh2BG630700 Rh2CG600800 Rh2DG643600
rosa_wichuraiana Rw2G051340 Rw2G051350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 255
AccBSI CCGCTC 1 cut(s) 126
AciI CCGC 3 cut(s) 124, 434, 446
AcoI YGGCCR 2 cut(s) 217, 438
AcvI CACGTG 1 cut(s) 306
AfaI GTAC 2 cut(s) 355, 550
AfiI CCNNNNNNNGG 3 cut(s) 32, 376, 400
AflIII ACRYGT 1 cut(s) 105
AgeI ACCGGT 1 cut(s) 393
AgsI TTSAA 2 cut(s) 85, 376
AjiI CACGTC 1 cut(s) 106
AjnI CCWGG 1 cut(s) 461
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw26I GTCTC 2 cut(s) 203, 543
AoxI GGCC 3 cut(s) 217, 438, 459
ApeKI GCWGC 2 cut(s) 96, 482
ArsI GACNNNNNNTTYG 2 cut(s) 355, 387
AsiGI ACCGGT 1 cut(s) 393
Asp700I GAANNNNTTC 1 cut(s) 21
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 2 cut(s) 267, 459
AsuC2I CCSGG 1 cut(s) 271
AsuII TTCGAA 1 cut(s) 344
AvaII GGWCC 1 cut(s) 267
BaeGI GKGCMC 1 cut(s) 311
BbrPI CACGTG 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 83, 469
BccI CCATC 1 cut(s) 212
BceAI ACGGC 2 cut(s) 241, 425
BciT130I CCWGG 1 cut(s) 463
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 2 cut(s) 203, 543
BfuAI ACCTGC 1 cut(s) 255
BglI GCCNNNNNGGC 2 cut(s) 225, 446
BisI GCNGC 3 cut(s) 97, 447, 483
BlsI GCNGC 3 cut(s) 98, 448, 484
BmcAI AGTACT 2 cut(s) 355, 550
Bme1390I CCNGG 2 cut(s) 271, 463
Bme18I GGWCC 1 cut(s) 267
BmgBI CACGTC 1 cut(s) 106
BmgT120I GGNCC 2 cut(s) 267, 459
BmiI GGNNCC 2 cut(s) 460, 532
BmrFI CCNGG 2 cut(s) 271, 463
BmrI ACTGGG 1 cut(s) 540
BmsI GCATC 1 cut(s) 415
BmuI ACTGGG 1 cut(s) 540
BpiI GAAGAC 1 cut(s) 43
Bpu14I TTCGAA 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 371
BpuMI CCSGG 1 cut(s) 271
BsaAI YACGTR 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 270, 441
BsaWI WCCGGW 1 cut(s) 393
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 376, 400
Bse118I RCCGGY 3 cut(s) 92, 215, 393
Bse1I ACTGG 1 cut(s) 546
Bse3DI GCAATG 1 cut(s) 40
BseBI CCWGG 1 cut(s) 463
BseDI CCNNGG 2 cut(s) 270, 441
BseGI GGATG 1 cut(s) 430
BseLI CCNNNNNNNGG 3 cut(s) 32, 376, 400
BseMI GCAATG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 546
BseRI GAGGAG 1 cut(s) 531
BseSI GKGCMC 1 cut(s) 311
BseXI GCAGC 2 cut(s) 83, 469
BshFI GGCC 3 cut(s) 219, 440, 461
BshTI ACCGGT 1 cut(s) 393
BsiSI CCGG 6 cut(s) 93, 169, 216, 270, 394, 401
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 3 cut(s) 32, 376, 400
BsmAI GTCTC 2 cut(s) 203, 543
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 3 cut(s) 219, 440, 461
Bso31I GGTCTC 1 cut(s) 203
Bsp119I TTCGAA 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 3 cut(s) 124, 434, 446
BspANI GGCC 3 cut(s) 219, 440, 461
BspLI GGNNCC 2 cut(s) 460, 532
BspMI ACCTGC 1 cut(s) 255
BspT104I TTCGAA 1 cut(s) 344
BspTNI GGTCTC 1 cut(s) 203
BsrBI CCGCTC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 40
BsrFI RCCGGY 3 cut(s) 92, 215, 393
BsrI ACTGG 1 cut(s) 546
BssAI RCCGGY 3 cut(s) 92, 215, 393
BssECI CCNNGG 2 cut(s) 270, 441
BssMI GATC 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 463
Bst4CI ACNGT 1 cut(s) 559
Bst6I CTCTTC 2 cut(s) 225, 512
BstAPI GCANNNNNTGC 1 cut(s) 366
BstBAI YACGTR 1 cut(s) 306
BstBI TTCGAA 1 cut(s) 344
BstC8I GCNNGC 2 cut(s) 47, 94
BstDSI CCRYGG 1 cut(s) 441
BstF5I GGATG 1 cut(s) 430
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 2 cut(s) 203, 543
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 7 cut(s) 96, 225, 234, 256, 366, 446, 488
BstNI CCWGG 1 cut(s) 463
BstSCI CCNGG 2 cut(s) 269, 461
BstSLI GKGCMC 1 cut(s) 311
BstV1I GCAGC 2 cut(s) 83, 469
BstV2I GAAGAC 1 cut(s) 43
BsuRI GGCC 3 cut(s) 219, 440, 461
BtgI CCRYGG 1 cut(s) 441
BtrI CACGTC 1 cut(s) 106
BtsCI GGATG 1 cut(s) 430
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 47, 94
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 3 cut(s) 92, 215, 393
Cfr13I GGNCC 2 cut(s) 267, 459
CseI GACGC 1 cut(s) 103
Csp6I GTAC 2 cut(s) 354, 549
CspAI ACCGGT 1 cut(s) 393
CviAII CATG 2 cut(s) 101, 410
CviJI RGCY 9 cut(s) 20, 96, 168, 219, 237, 301, 440, 461, 482
CviKI_1 RGCY 9 cut(s) 20, 96, 168, 219, 237, 301, 440, 461, 482
CviQI GTAC 2 cut(s) 354, 549
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
EaeI YGGCCR 2 cut(s) 217, 438
Eam1104I CTCTTC 2 cut(s) 225, 512
EarI CTCTTC 2 cut(s) 225, 512
Eco31I GGTCTC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 267
Eco72I CACGTG 1 cut(s) 306
EcoO109I RGGNCCY 1 cut(s) 459
EcoRII CCWGG 1 cut(s) 461
FaeI CATG 2 cut(s) 104, 413
FaiI YATR 2 cut(s) 102, 411
FaqI GGGAC 1 cut(s) 121
FatI CATG 2 cut(s) 100, 409
Fnu4HI GCNGC 3 cut(s) 97, 447, 483
FokI GGATG 1 cut(s) 437
Fsp4HI GCNGC 3 cut(s) 97, 447, 483
GlaI GCGC 1 cut(s) 91
GluI GCNGC 3 cut(s) 97, 447, 483
HaeIII GGCC 3 cut(s) 219, 440, 461
HapII CCGG 6 cut(s) 93, 169, 216, 270, 394, 401
HgaI GACGC 1 cut(s) 103
HhaI GCGC 1 cut(s) 92
Hin1II CATG 2 cut(s) 104, 413
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HindIII AAGCTT 1 cut(s) 18
HpaII CCGG 6 cut(s) 93, 169, 216, 270, 394, 401
Hpy188I TCNGA 2 cut(s) 157, 336
Hpy188III TCNNGA 3 cut(s) 6, 26, 208
Hpy99I CGWCG 2 cut(s) 119, 227
HpyAV CCTTC 4 cut(s) 235, 370, 415, 424
HpyCH4III ACNGT 1 cut(s) 559
HpyCH4IV ACGT 2 cut(s) 105, 305
HpyCH4V TGCA 2 cut(s) 324, 360
HpyF10VI GCNNNNNNNGC 7 cut(s) 96, 225, 234, 256, 366, 446, 488
HpySE526I ACGT 2 cut(s) 105, 305
Hsp92II CATG 2 cut(s) 104, 413
HspAI GCGC 1 cut(s) 90
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 200
Lsp1109I GCAGC 2 cut(s) 83, 469
LweI GCATC 1 cut(s) 415
MaeII ACGT 2 cut(s) 105, 305
MalI GATC 1 cut(s) 159
MbiI CCGCTC 1 cut(s) 126
MboI GATC 1 cut(s) 157
MboII GAAGA 5 cut(s) 48, 242, 304, 307, 529
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 1 cut(s) 180
MnlI CCTC 9 cut(s) 86, 211, 312, 322, 395, 449, 489, 519, 552
MroNI GCCGGC 1 cut(s) 92
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 1 cut(s) 315
MspI CCGG 6 cut(s) 93, 169, 216, 270, 394, 401
MspR9I CCNGG 2 cut(s) 271, 463
MvaI CCWGG 1 cut(s) 463
MwoI GCNNNNNNNGC 7 cut(s) 96, 225, 234, 256, 366, 446, 488
NaeI GCCGGC 1 cut(s) 94
NciI CCSGG 1 cut(s) 271
NdeII GATC 1 cut(s) 157
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 2 cut(s) 104, 413
NlaIV GGNNCC 2 cut(s) 460, 532
NspV TTCGAA 1 cut(s) 344
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PdiI GCCGGC 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 21
PinAI ACCGGT 1 cut(s) 393
PkrI GCNGC 3 cut(s) 98, 448, 484
PmaCI CACGTG 1 cut(s) 306
PmlI CACGTG 1 cut(s) 306
Ppu21I YACGTR 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 461
PspCI CACGTG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 461
PspN4I GGNNCC 2 cut(s) 460, 532
PspPI GGNCC 2 cut(s) 267, 459
RsaI GTAC 2 cut(s) 355, 550
RsaNI GTAC 2 cut(s) 354, 549
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 3 cut(s) 97, 447, 483
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 2 cut(s) 267, 459
ScaI AGTACT 2 cut(s) 355, 550
ScrFI CCNGG 2 cut(s) 271, 463
SduI GDGCHC 1 cut(s) 311
SfaNI GCATC 1 cut(s) 415
SfuI TTCGAA 1 cut(s) 344
SinI GGWCC 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 1 cut(s) 180
SsiI CCGC 3 cut(s) 124, 434, 446
StyD4I CCNGG 2 cut(s) 269, 461
TaaI ACNGT 1 cut(s) 559
TaiI ACGT 2 cut(s) 108, 308
TaqI TCGA 5 cut(s) 69, 117, 207, 344, 494
TasI AATT 1 cut(s) 180
TatI WGTACW 2 cut(s) 353, 548
TauI GCSGC 1 cut(s) 449
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TseI GCWGC 2 cut(s) 96, 482
TspDTI ATGAA 1 cut(s) 426
VpaK11BI GGWCC 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 21
ZrmI AGTACT 2 cut(s) 355, 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.