Rw2G051340

Zinc finger AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0011887
Physical Location & Seq
Reverse (-)
79071544 .. 79072116
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G051340.1

Sequence Viewer

Length: 489 bp
ATGTCAGGAGGAACAGAAGCTTTTCCAGATTTGGGAAGACATTGCCAGCACCCTGATTGCCACCAACTCGATTTCCTCCCTTTCAAATGCGCCGGCTGCCATGACTCCCACGACTGCCCCAAAGCCGACCACAACAGCCGGAAAGTGATAATTTGTGAAGTCTGCTCCACCTCTATAGAGACCACCGGCCACGACGGGGAAGAGAGCCAGAAGGTGTTGCTGGAGAGGCACAGCAAGTCCGGGAATTGCGACCCGAAAAAGAAGAAGAAGCCCACATGCCCTGTTAAGGGGTGCAAGGAGATTCTGACCTTTTCGAATAATAGTACTTGCAAGACTTGCCATCTGAAGGTCTGCCTCAAGCACCGGTTTCCGGCAGACCATGCATGTAAGAAGGAAGCGAAGGCCGTGGCTAGGAATGGGAAAGATTGTGGGAAGAGTGAGTTGGAACCCAAGTCTCCTCCCAGTACTCCATCAGTTGGGGAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010200 GO:0010243 GO:0033993 GO:0042221 GO:0042493 GO:0050896 GO:0097305 GO:1901698 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-AN1

Protein Analysis

162

Amino Acids

17.74

Weight (kDa)

8.48

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-AN1 PF01428 93 - 133 3.6e-09 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28210 AT3G28210
fragaria_vesca FvH4_6g50080
malus_domestica MD09G1039300.v1.1 MD17G1040300.v1.1
prunus_persica Prupe.3G278700_v2.0.a1
pyrus_communis pycom17g03610
rosa_chinensis RchiOBHm_Chr2g0170351
rosa_laevigata RLG00000021948
rosa_multiflora Rmu_sc0011601.1_g000011 Rmu_sc0012445.1_g000015
rosa_roxburghii Rroxscaffold_2G00081420
rosa_rugosa Rorug02G0548400
rosa_samantha Rh2AG619800 Rh2BG630700 Rh2CG600800 Rh2DG643600
rosa_wichuraiana Rw2G051340 Rw2G051350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 476
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 1 cut(s) 482
AcuI CTGAAG 1 cut(s) 365
AfaI GTAC 2 cut(s) 325, 466
AfiI CCNNNNNNNGG 8 cut(s) 32, 196, 286, 287, 346, 370, 411, 476
AgeI ACCGGT 1 cut(s) 363
AgsI TTSAA 1 cut(s) 85
AjuI GAANNNNNNNTTGG 2 cut(s) 425, 457
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw26I GTCTC 2 cut(s) 173, 459
AoxI GGCC 2 cut(s) 187, 402
ApeKI GCWGC 1 cut(s) 96
ApoI RAATTY 1 cut(s) 482
AsiGI ACCGGT 1 cut(s) 363
Asp700I GAANNNNTTC 1 cut(s) 21
AspLEI GCGC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 241
AsuII TTCGAA 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 83
BccI CCATC 2 cut(s) 348, 478
BceAI ACGGC 1 cut(s) 389
BcnI CCSGG 1 cut(s) 241
BcoDI GTCTC 2 cut(s) 173, 459
BfaI CTAG 1 cut(s) 411
BfmI CTRYAG 1 cut(s) 174
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
BmcAI AGTACT 2 cut(s) 325, 466
Bme1390I CCNGG 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 447
BmrFI CCNGG 1 cut(s) 241
BmrI ACTGGG 1 cut(s) 456
BmuI ACTGGG 1 cut(s) 456
BpiI GAAGAC 1 cut(s) 43
BpmI CTGGAG 1 cut(s) 242
Bpu14I TTCGAA 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 341
BpuMI CCSGG 1 cut(s) 241
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 405
BsaWI WCCGGW 1 cut(s) 363
Bsc4I CCNNNNNNNGG 8 cut(s) 32, 196, 286, 287, 346, 370, 411, 476
Bse118I RCCGGY 3 cut(s) 92, 185, 363
Bse1I ACTGG 1 cut(s) 462
Bse3DI GCAATG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 405
BseLI CCNNNNNNNGG 8 cut(s) 32, 196, 286, 287, 346, 370, 411, 476
BseMI GCAATG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 462
BseRI GAGGAG 1 cut(s) 447
BseXI GCAGC 1 cut(s) 83
BshFI GGCC 2 cut(s) 189, 404
BshTI ACCGGT 1 cut(s) 363
BsiSI CCGG 6 cut(s) 93, 139, 186, 240, 364, 371
BslI CCNNNNNNNGG 8 cut(s) 32, 196, 286, 287, 346, 370, 411, 476
BsmAI GTCTC 2 cut(s) 173, 459
BsnI GGCC 2 cut(s) 189, 404
Bso31I GGTCTC 1 cut(s) 173
Bsp119I TTCGAA 1 cut(s) 314
BspANI GGCC 2 cut(s) 189, 404
BspLI GGNNCC 1 cut(s) 447
BspT104I TTCGAA 1 cut(s) 314
BspTNI GGTCTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 40
BsrFI RCCGGY 3 cut(s) 92, 185, 363
BsrI ACTGG 1 cut(s) 462
BssAI RCCGGY 3 cut(s) 92, 185, 363
BssECI CCNNGG 1 cut(s) 405
Bst6I CTCTTC 2 cut(s) 195, 428
BstAPI GCANNNNNTGC 2 cut(s) 336, 380
BstBI TTCGAA 1 cut(s) 314
BstC8I GCNNGC 2 cut(s) 47, 94
BstDSI CCRYGG 1 cut(s) 405
BstHHI GCGC 1 cut(s) 92
BstMAI GTCTC 2 cut(s) 173, 459
BstMWI GCNNNNNNNGC 4 cut(s) 96, 226, 336, 380
BstNSI RCATGY 2 cut(s) 279, 387
BstSCI CCNGG 1 cut(s) 239
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 83
BstV2I GAAGAC 1 cut(s) 43
BsuRI GGCC 2 cut(s) 189, 404
BtgI CCRYGG 1 cut(s) 405
Cac8I GCNNGC 2 cut(s) 47, 94
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 3 cut(s) 92, 185, 363
Csp6I GTAC 2 cut(s) 324, 465
CspAI ACCGGT 1 cut(s) 363
CviAII CATG 4 cut(s) 101, 276, 380, 384
CviJI RGCY 9 cut(s) 20, 96, 125, 138, 189, 207, 271, 404, 410
CviKI_1 RGCY 9 cut(s) 20, 96, 125, 138, 189, 207, 271, 404, 410
CviQI GTAC 2 cut(s) 324, 465
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 2 cut(s) 195, 428
EarI CTCTTC 2 cut(s) 195, 428
Eco31I GGTCTC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 365
EcoT22I ATGCAT 1 cut(s) 385
FaeI CATG 4 cut(s) 104, 279, 383, 387
FaiI YATR 5 cut(s) 102, 176, 277, 381, 385
FatI CATG 4 cut(s) 100, 275, 379, 383
Fnu4HI GCNGC 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 1 cut(s) 411
GlaI GCGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 97
GsuI CTGGAG 1 cut(s) 242
HaeIII GGCC 2 cut(s) 189, 404
HapII CCGG 6 cut(s) 93, 139, 186, 240, 364, 371
HhaI GCGC 1 cut(s) 92
Hin1II CATG 4 cut(s) 104, 279, 383, 387
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 2 cut(s) 104, 301
HpaII CCGG 6 cut(s) 93, 139, 186, 240, 364, 371
Hpy188I TCNGA 2 cut(s) 306, 345
Hpy188III TCNNGA 2 cut(s) 6, 26
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 4 cut(s) 205, 340, 385, 394
HpyCH4V TGCA 3 cut(s) 294, 330, 383
HpyF10VI GCNNNNNNNGC 4 cut(s) 96, 226, 336, 380
Hsp92II CATG 4 cut(s) 104, 279, 383, 387
HspAI GCGC 1 cut(s) 90
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
LmnI GCTCC 1 cut(s) 170
Lsp1109I GCAGC 1 cut(s) 83
MaeI CTAG 1 cut(s) 411
MboII GAAGA 5 cut(s) 48, 212, 274, 277, 445
MluCI AATT 3 cut(s) 150, 244, 482
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 5 cut(s) 86, 181, 219, 365, 468
Mph1103I ATGCAT 1 cut(s) 385
MroNI GCCGGC 1 cut(s) 92
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 1 cut(s) 285
MspI CCGG 6 cut(s) 93, 139, 186, 240, 364, 371
MspR9I CCNGG 1 cut(s) 241
MwoI GCNNNNNNNGC 4 cut(s) 96, 226, 336, 380
NaeI GCCGGC 1 cut(s) 94
NciI CCSGG 1 cut(s) 241
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 4 cut(s) 104, 279, 383, 387
NlaIV GGNNCC 1 cut(s) 447
NsiI ATGCAT 1 cut(s) 385
NspI RCATGY 2 cut(s) 279, 387
NspV TTCGAA 1 cut(s) 314
PdiI GCCGGC 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 301
PflMI CCANNNNNTGG 1 cut(s) 476
PfoI TCCNGGA 1 cut(s) 239
PinAI ACCGGT 1 cut(s) 363
PkrI GCNGC 1 cut(s) 98
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 447
RsaI GTAC 2 cut(s) 325, 466
RsaNI GTAC 2 cut(s) 324, 465
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 97
ScaI AGTACT 2 cut(s) 325, 466
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 241
SetI ASST 5 cut(s) 22, 173, 216, 311, 351
SfcI CTRYAG 1 cut(s) 174
SfuI TTCGAA 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 3 cut(s) 150, 244, 482
SspMI CTAG 1 cut(s) 411
StyD4I CCNGG 1 cut(s) 239
TaqI TCGA 2 cut(s) 69, 314
TasI AATT 3 cut(s) 150, 244, 482
TatI WGTACW 2 cut(s) 323, 464
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseI GCWGC 1 cut(s) 96
Van91I CCANNNNNTGG 1 cut(s) 476
XapI RAATTY 1 cut(s) 482
XceI RCATGY 2 cut(s) 279, 387
XmnI GAANNNNTTC 1 cut(s) 21
XspI CTAG 1 cut(s) 411
ZrmI AGTACT 2 cut(s) 325, 466
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.