Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011887

Physical Location & Seq

Genomic Coordinates Reverse (-)

79473955 .. 79474527

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021948

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTCAGGAGGAACAGAAGCTTTTCCAGATTTGGGAAGACATTGCCAGCACCCTGATTGCCACCAACTCGATTTCCTCCCATTCAAATGCGCCGGCTGCCATGACGTGTTCTGCGTCGAACACCGCTCTTACAAGTCCCACGACTGCCCCAAATCCGACCACAACAGCCGGAAAGTGATCATTTGTGAAGTCTGCTCCACCTCCATAGAGACCACCGGCCACGACGGCGAAGAGAGCCAGAAGGTGTTGCTGGAGAGGCACAGCAAGTCCGGAGATTGCGACCCGAAAAAGAAGAAGAAGCCCACATGCCCTGTTAAGAGGTGCAAGGAGATTCTGACCTTTTCGAATAATAGTACTTGCAAGACTTGCCATCTGAAGGTCTGCCTCAAGCACCGGTTTCCGGCCGACCATGAATGTAAGAAGGAAGCGAAGGCGGTGGCCGTGGTGGCGAATGGAGGGGCCTGGAATGGGAAGTTCTTGGCTGCTTTTGCTTCGAGGAATGGGAAAGATTGTGGGAAGAGTGAGAGGGGTTCCACGTCCCCTCCCAGTACTCCATCAGTTAGGGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010200 GO:0010243 GO:0033993 GO:0042221 GO:0042493 GO:0050896 GO:0097305 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-AN1

Protein Analysis

191

Amino Acids

20.9

Weight (kDa)

8.84

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-AN1	PF01428	15 - 52	8.8e-11	AN1-like Zinc finger
zf-AN1	PF01428	103 - 143	8.4e-09	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28210 AT3G28210
fragaria_vesca	FvH4_6g50080
malus_domestica	MD09G1039300.v1.1 MD17G1040300.v1.1
prunus_persica	Prupe.3G278700_v2.0.a1
pyrus_communis	pycom17g03610
rosa_chinensis	RchiOBHm_Chr2g0170351
rosa_laevigata	RLG00000021948
rosa_multiflora	Rmu_sc0011601.1_g000011 Rmu_sc0012445.1_g000015
rosa_roxburghii	Rroxscaffold_2G00081420
rosa_rugosa	Rorug02G0548400
rosa_samantha	Rh2AG619800 Rh2BG630700 Rh2CG600800 Rh2DG643600
rosa_wichuraiana	Rw2G051340 Rw2G051350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	269
AciI	CCGC	2 cut(s)	124, 434
AcoI	YGGCCR	3 cut(s)	217, 402, 438
AcuI	CTGAAG	1 cut(s)	395
AfaI	GTAC	2 cut(s)	355, 550
AfiI	CCNNNNNNNGG	4 cut(s)	32, 376, 400, 468
AflIII	ACRYGT	1 cut(s)	105
AgeI	ACCGGT	1 cut(s)	393
AgsI	TTSAA	1 cut(s)	85
AjiI	CACGTC	2 cut(s)	106, 537
AjnI	CCWGG	1 cut(s)	461
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw26I	GTCTC	1 cut(s)	203
Aor13HI	TCCGGA	1 cut(s)	269
AoxI	GGCC	4 cut(s)	217, 402, 438, 459
ApeKI	GCWGC	2 cut(s)	96, 482
AsiGI	ACCGGT	1 cut(s)	393
Asp700I	GAANNNNTTC	1 cut(s)	21
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	459
AsuII	TTCGAA	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	83, 469
BccI	CCATC	2 cut(s)	378, 562
BceAI	ACGGC	2 cut(s)	241, 425
BciT130I	CCWGG	1 cut(s)	463
BclI	TGATCA	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	203
BglI	GCCNNNNNGGC	2 cut(s)	225, 446
BisI	GCNGC	2 cut(s)	97, 483
BlsI	GCNGC	2 cut(s)	98, 484
BmcAI	AGTACT	2 cut(s)	355, 550
Bme1390I	CCNGG	1 cut(s)	463
BmgBI	CACGTC	2 cut(s)	106, 537
BmgT120I	GGNCC	1 cut(s)	459
BmiI	GGNNCC	2 cut(s)	460, 532
BmrFI	CCNGG	1 cut(s)	463
BmrI	ACTGGG	1 cut(s)	540
BmuI	ACTGGG	1 cut(s)	540
BpiI	GAAGAC	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	272
Bpu14I	TTCGAA	1 cut(s)	344
BpuEI	CTTGAG	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	441
BsaWI	WCCGGW	2 cut(s)	269, 393
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 376, 400, 468
Bse118I	RCCGGY	3 cut(s)	92, 215, 393
Bse1I	ACTGG	1 cut(s)	546
Bse3DI	GCAATG	1 cut(s)	40
BseAI	TCCGGA	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	463
BseDI	CCNNGG	1 cut(s)	441
BseLI	CCNNNNNNNGG	4 cut(s)	32, 376, 400, 468
BseMI	GCAATG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	546
BseX3I	CGGCCG	1 cut(s)	402
BseXI	GCAGC	2 cut(s)	83, 469
Bsh1285I	CGRYCG	1 cut(s)	405
BshFI	GGCC	4 cut(s)	219, 404, 440, 461
BshTI	ACCGGT	1 cut(s)	393
BsiEI	CGRYCG	1 cut(s)	405
BsiSI	CCGG	6 cut(s)	93, 169, 216, 270, 394, 401
BslFI	GGGAC	2 cut(s)	121, 523
BslI	CCNNNNNNNGG	4 cut(s)	32, 376, 400, 468
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	2 cut(s)	121, 523
BsnI	GGCC	4 cut(s)	219, 404, 440, 461
Bso31I	GGTCTC	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	344
Bsp13I	TCCGGA	1 cut(s)	269
Bsp143I	GATC	1 cut(s)	177
BspACI	CCGC	2 cut(s)	124, 434
BspANI	GGCC	4 cut(s)	219, 404, 440, 461
BspEI	TCCGGA	1 cut(s)	269
BspLI	GGNNCC	2 cut(s)	460, 532
BspT104I	TTCGAA	1 cut(s)	344
BspTNI	GGTCTC	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	40
BsrFI	RCCGGY	3 cut(s)	92, 215, 393
BsrI	ACTGG	1 cut(s)	546
BssAI	RCCGGY	3 cut(s)	92, 215, 393
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	463
Bst6I	CTCTTC	2 cut(s)	225, 512
BstAPI	GCANNNNNTGC	1 cut(s)	366
BstBI	TTCGAA	1 cut(s)	344
BstC8I	GCNNGC	2 cut(s)	47, 94
BstDSI	CCRYGG	1 cut(s)	441
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	1 cut(s)	177
BstMCI	CGRYCG	1 cut(s)	405
BstMWI	GCNNNNNNNGC	7 cut(s)	96, 225, 234, 256, 366, 446, 488
BstNI	CCWGG	1 cut(s)	463
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	461
BstV1I	GCAGC	2 cut(s)	83, 469
BstV2I	GAAGAC	1 cut(s)	43
BstZI	CGGCCG	1 cut(s)	402
BsuRI	GGCC	4 cut(s)	219, 404, 440, 461
BtgI	CCRYGG	1 cut(s)	441
BtrI	CACGTC	2 cut(s)	106, 537
Cac8I	GCNNGC	2 cut(s)	47, 94
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	3 cut(s)	92, 215, 393
Cfr13I	GGNCC	1 cut(s)	459
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	2 cut(s)	354, 549
CspAI	ACCGGT	1 cut(s)	393
CviAII	CATG	3 cut(s)	101, 306, 410
CviQI	GTAC	2 cut(s)	354, 549
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
EaeI	YGGCCR	3 cut(s)	217, 402, 438
EagI	CGGCCG	1 cut(s)	402
Eam1104I	CTCTTC	2 cut(s)	225, 512
EarI	CTCTTC	2 cut(s)	225, 512
EclXI	CGGCCG	1 cut(s)	402
Eco31I	GGTCTC	1 cut(s)	203
Eco52I	CGGCCG	1 cut(s)	402
Eco57I	CTGAAG	1 cut(s)	395
EcoO109I	RGGNCCY	1 cut(s)	459
EcoRII	CCWGG	1 cut(s)	461
FaeI	CATG	3 cut(s)	104, 309, 413
FaiI	YATR	4 cut(s)	102, 206, 307, 411
FaqI	GGGAC	2 cut(s)	121, 523
FatI	CATG	3 cut(s)	100, 305, 409
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	2 cut(s)	97, 483
Fsp4HI	GCNGC	2 cut(s)	97, 483
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	2 cut(s)	97, 483
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	4 cut(s)	219, 404, 440, 461
HapII	CCGG	6 cut(s)	93, 169, 216, 270, 394, 401
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	3 cut(s)	104, 309, 413
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	6 cut(s)	93, 169, 216, 270, 394, 401
Hpy188I	TCNGA	3 cut(s)	157, 336, 375
Hpy188III	TCNNGA	3 cut(s)	6, 26, 270
Hpy99I	CGWCG	2 cut(s)	119, 227
HpyAV	CCTTC	4 cut(s)	235, 370, 415, 424
HpyCH4IV	ACGT	2 cut(s)	105, 536
HpyCH4V	TGCA	2 cut(s)	324, 360
HpyF10VI	GCNNNNNNNGC	7 cut(s)	96, 225, 234, 256, 366, 446, 488
HpySE526I	ACGT	2 cut(s)	105, 536
Hsp92II	CATG	3 cut(s)	104, 309, 413
HspAI	GCGC	1 cut(s)	90
Kpn2I	TCCGGA	1 cut(s)	269
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	2 cut(s)	83, 469
MaeII	ACGT	2 cut(s)	105, 536
MalI	GATC	1 cut(s)	179
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	1 cut(s)	177
MboII	GAAGA	5 cut(s)	48, 242, 304, 307, 529
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	9 cut(s)	86, 211, 249, 312, 395, 449, 489, 519, 552
MroI	TCCGGA	1 cut(s)	269
MroNI	GCCGGC	1 cut(s)	92
MroXI	GAANNNNTTC	1 cut(s)	21
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	85
MspI	CCGG	6 cut(s)	93, 169, 216, 270, 394, 401
MspR9I	CCNGG	1 cut(s)	463
MvaI	CCWGG	1 cut(s)	463
MwoI	GCNNNNNNNGC	7 cut(s)	96, 225, 234, 256, 366, 446, 488
NaeI	GCCGGC	1 cut(s)	94
NdeII	GATC	1 cut(s)	177
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	3 cut(s)	104, 309, 413
NlaIV	GGNNCC	2 cut(s)	460, 532
NspI	RCATGY	1 cut(s)	309
NspV	TTCGAA	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PdiI	GCCGGC	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	331
PinAI	ACCGGT	1 cut(s)	393
PkrI	GCNGC	2 cut(s)	98, 484
Psp6I	CCWGG	1 cut(s)	461
PspGI	CCWGG	1 cut(s)	461
PspN4I	GGNNCC	2 cut(s)	460, 532
PspPI	GGNCC	1 cut(s)	459
RsaI	GTAC	2 cut(s)	355, 550
RsaNI	GTAC	2 cut(s)	354, 549
RseI	CAYNNNNRTG	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	2 cut(s)	97, 483
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	1 cut(s)	459
ScaI	AGTACT	2 cut(s)	355, 550
ScrFI	CCNGG	1 cut(s)	463
SetI	ASST	8 cut(s)	22, 108, 203, 246, 323, 341, 381, 539
SfuI	TTCGAA	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	85
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SsiI	CCGC	2 cut(s)	124, 434
StyD4I	CCNGG	1 cut(s)	461
TaiI	ACGT	2 cut(s)	108, 539
TaqI	TCGA	4 cut(s)	69, 117, 344, 494
TatI	WGTACW	2 cut(s)	353, 548
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TseI	GCWGC	2 cut(s)	96, 482
TspDTI	ATGAA	1 cut(s)	426
XceI	RCATGY	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	21
ZrmI	AGTACT	2 cut(s)	355, 550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.