Rh2AG619800

Zinc finger AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0011887
Physical Location & Seq
Reverse (-)
84364807 .. 84365379
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG619800.1

Sequence Viewer

Length: 573 bp
ATGTCAGGAGGAACAGAAGCTTTTCCAGATTTGGGAAGACATTGCCAGCACCCTGATTGCCACCAACTCGATTTCCTCCCTTTCAAATGCGCCGGCTGCCATGACGTGTTCTGCGTCGAACACCGCTCTTACAAGTCCCACGACTGCCCCAAAGCCGACCACAACAGCCGGAAAGTGATAATTTGTGAAGTCTGCTCCACCTCCATAGAGACCACCGGCCACGACGGCGAAAAGAGCCAGAAGGTGTTGCTGGAGAGGCACAGCAAGTCCGGGAATTGCGACCCGAAAAAGAAGAAGAAGCTCACATGCCCTGTTAAGAAGTGCAAGGAGATTCTGACCTTTTCGAATAATAGTACTTGCAAGACTTGCCATTTGAAGGTCTGCCTCAAGCACCGGTTTCCGGCCGACCATGAATGTAAGAAGGAAGCGAAGGCCGTGGCCGTGGCGGCGAATGGAGGGACCTGGAATGGGAAGTTCTTGGCTGCTTTTGCTTCGAGGAATGGGAAAGATTGTGGGAAGAGTGAGAGGGGTTCCAAGTCTCCTCCCAGTACTCCATCAGTTAGGGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010200 GO:0010243 GO:0033993 GO:0042221 GO:0042493 GO:0050896 GO:0097305 GO:1901698 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-AN1

Protein Analysis

190

Amino Acids

20.9

Weight (kDa)

9.11

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-AN1 PF01428 15 - 53 4.4e-11 AN1-like Zinc finger
zf-AN1 PF01428 103 - 143 8.3e-09 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28210 AT3G28210
fragaria_vesca FvH4_6g50080
malus_domestica MD09G1039300.v1.1 MD17G1040300.v1.1
prunus_persica Prupe.3G278700_v2.0.a1
pyrus_communis pycom17g03610
rosa_chinensis RchiOBHm_Chr2g0170351
rosa_laevigata RLG00000021948
rosa_multiflora Rmu_sc0011601.1_g000011 Rmu_sc0012445.1_g000015
rosa_roxburghii Rroxscaffold_2G00081420
rosa_rugosa Rorug02G0548400
rosa_samantha Rh2AG619800 Rh2BG630700 Rh2CG600800 Rh2DG643600
rosa_wichuraiana Rw2G051340 Rw2G051350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 126
AciI CCGC 2 cut(s) 124, 446
AcoI YGGCCR 3 cut(s) 217, 402, 438
AfaI GTAC 2 cut(s) 355, 550
AfiI CCNNNNNNNGG 4 cut(s) 32, 376, 400, 468
AflIII ACRYGT 1 cut(s) 105
AgeI ACCGGT 1 cut(s) 393
AgsI TTSAA 2 cut(s) 85, 376
AjiI CACGTC 1 cut(s) 106
AjnI CCWGG 1 cut(s) 461
AluBI AGCT 2 cut(s) 20, 301
AluI AGCT 2 cut(s) 20, 301
Alw26I GTCTC 2 cut(s) 203, 543
AoxI GGCC 4 cut(s) 217, 402, 432, 438
ApeKI GCWGC 2 cut(s) 96, 482
ArsI GACNNNNNNTTYG 2 cut(s) 355, 387
AsiGI ACCGGT 1 cut(s) 393
Asp700I GAANNNNTTC 1 cut(s) 21
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 459
AsuC2I CCSGG 1 cut(s) 271
AsuII TTCGAA 1 cut(s) 344
AvaII GGWCC 1 cut(s) 459
BbsI GAAGAC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 83, 469
BccI CCATC 1 cut(s) 562
BceAI ACGGC 3 cut(s) 241, 419, 425
BciT130I CCWGG 1 cut(s) 463
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 2 cut(s) 203, 543
BglI GCCNNNNNGGC 2 cut(s) 225, 446
BisI GCNGC 3 cut(s) 97, 447, 483
BlsI GCNGC 3 cut(s) 98, 448, 484
BmcAI AGTACT 2 cut(s) 355, 550
Bme1390I CCNGG 2 cut(s) 271, 463
Bme18I GGWCC 1 cut(s) 459
BmgBI CACGTC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 459
BmiI GGNNCC 2 cut(s) 460, 532
BmrFI CCNGG 2 cut(s) 271, 463
BmrI ACTGGG 1 cut(s) 540
BmuI ACTGGG 1 cut(s) 540
BpiI GAAGAC 1 cut(s) 43
BpmI CTGGAG 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 371
BpuMI CCSGG 1 cut(s) 271
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 435, 441
BsaWI WCCGGW 1 cut(s) 393
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 376, 400, 468
Bse118I RCCGGY 3 cut(s) 92, 215, 393
Bse1I ACTGG 1 cut(s) 546
Bse3DI GCAATG 1 cut(s) 40
BseBI CCWGG 1 cut(s) 463
BseDI CCNNGG 2 cut(s) 435, 441
BseLI CCNNNNNNNGG 4 cut(s) 32, 376, 400, 468
BseMI GCAATG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 546
BseRI GAGGAG 1 cut(s) 531
BseX3I CGGCCG 1 cut(s) 402
BseXI GCAGC 2 cut(s) 83, 469
Bsh1285I CGRYCG 1 cut(s) 405
BshFI GGCC 4 cut(s) 219, 404, 434, 440
BshTI ACCGGT 1 cut(s) 393
BsiEI CGRYCG 1 cut(s) 405
BsiSI CCGG 6 cut(s) 93, 169, 216, 270, 394, 401
BslFI GGGAC 2 cut(s) 121, 472
BslI CCNNNNNNNGG 4 cut(s) 32, 376, 400, 468
BsmAI GTCTC 2 cut(s) 203, 543
BsmFI GGGAC 2 cut(s) 121, 472
BsnI GGCC 4 cut(s) 219, 404, 434, 440
Bso31I GGTCTC 1 cut(s) 203
Bsp119I TTCGAA 1 cut(s) 344
BspACI CCGC 2 cut(s) 124, 446
BspANI GGCC 4 cut(s) 219, 404, 434, 440
BspLI GGNNCC 2 cut(s) 460, 532
BspT104I TTCGAA 1 cut(s) 344
BspTNI GGTCTC 1 cut(s) 203
BsrBI CCGCTC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 40
BsrFI RCCGGY 3 cut(s) 92, 215, 393
BsrI ACTGG 1 cut(s) 546
BssAI RCCGGY 3 cut(s) 92, 215, 393
BssECI CCNNGG 2 cut(s) 435, 441
Bst2UI CCWGG 1 cut(s) 463
Bst6I CTCTTC 1 cut(s) 512
BstAPI GCANNNNNTGC 1 cut(s) 366
BstBI TTCGAA 1 cut(s) 344
BstC8I GCNNGC 2 cut(s) 47, 94
BstDSI CCRYGG 2 cut(s) 435, 441
BstHHI GCGC 1 cut(s) 92
BstMAI GTCTC 2 cut(s) 203, 543
BstMCI CGRYCG 1 cut(s) 405
BstMWI GCNNNNNNNGC 7 cut(s) 96, 225, 234, 256, 366, 446, 488
BstNI CCWGG 1 cut(s) 463
BstNSI RCATGY 1 cut(s) 309
BstSCI CCNGG 2 cut(s) 269, 461
BstV1I GCAGC 2 cut(s) 83, 469
BstV2I GAAGAC 1 cut(s) 43
BstZI CGGCCG 1 cut(s) 402
BsuRI GGCC 4 cut(s) 219, 404, 434, 440
BtgI CCRYGG 2 cut(s) 435, 441
BtrI CACGTC 1 cut(s) 106
Cac8I GCNNGC 2 cut(s) 47, 94
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 3 cut(s) 92, 215, 393
Cfr13I GGNCC 1 cut(s) 459
CseI GACGC 1 cut(s) 103
Csp6I GTAC 2 cut(s) 354, 549
CspAI ACCGGT 1 cut(s) 393
CviAII CATG 3 cut(s) 101, 306, 410
CviQI GTAC 2 cut(s) 354, 549
EaeI YGGCCR 3 cut(s) 217, 402, 438
EagI CGGCCG 1 cut(s) 402
Eam1104I CTCTTC 1 cut(s) 512
EarI CTCTTC 1 cut(s) 512
EclXI CGGCCG 1 cut(s) 402
Eco31I GGTCTC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 459
Eco52I CGGCCG 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 459
EcoRII CCWGG 1 cut(s) 461
FaeI CATG 3 cut(s) 104, 309, 413
FaiI YATR 4 cut(s) 102, 206, 307, 411
FaqI GGGAC 2 cut(s) 121, 472
FatI CATG 3 cut(s) 100, 305, 409
Fnu4HI GCNGC 3 cut(s) 97, 447, 483
Fsp4HI GCNGC 3 cut(s) 97, 447, 483
GlaI GCGC 1 cut(s) 91
GluI GCNGC 3 cut(s) 97, 447, 483
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 4 cut(s) 219, 404, 434, 440
HapII CCGG 6 cut(s) 93, 169, 216, 270, 394, 401
HgaI GACGC 1 cut(s) 103
HhaI GCGC 1 cut(s) 92
Hin1II CATG 3 cut(s) 104, 309, 413
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 1 cut(s) 331
HpaII CCGG 6 cut(s) 93, 169, 216, 270, 394, 401
Hpy188I TCNGA 1 cut(s) 336
Hpy188III TCNNGA 2 cut(s) 6, 26
Hpy99I CGWCG 2 cut(s) 119, 227
HpyAV CCTTC 4 cut(s) 235, 370, 415, 424
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 2 cut(s) 324, 360
HpyF10VI GCNNNNNNNGC 7 cut(s) 96, 225, 234, 256, 366, 446, 488
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 3 cut(s) 104, 309, 413
HspAI GCGC 1 cut(s) 90
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
LmnI GCTCC 1 cut(s) 200
Lsp1109I GCAGC 2 cut(s) 83, 469
MaeII ACGT 1 cut(s) 105
MbiI CCGCTC 1 cut(s) 126
MboII GAAGA 4 cut(s) 48, 304, 307, 529
MluCI AATT 2 cut(s) 180, 274
MnlI CCTC 8 cut(s) 86, 211, 249, 395, 449, 489, 519, 552
MroNI GCCGGC 1 cut(s) 92
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 1 cut(s) 315
MspI CCGG 6 cut(s) 93, 169, 216, 270, 394, 401
MspR9I CCNGG 2 cut(s) 271, 463
MvaI CCWGG 1 cut(s) 463
MwoI GCNNNNNNNGC 7 cut(s) 96, 225, 234, 256, 366, 446, 488
NaeI GCCGGC 1 cut(s) 94
NciI CCSGG 1 cut(s) 271
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 3 cut(s) 104, 309, 413
NlaIV GGNNCC 2 cut(s) 460, 532
NspI RCATGY 1 cut(s) 309
NspV TTCGAA 1 cut(s) 344
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PdiI GCCGGC 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 331
PfoI TCCNGGA 1 cut(s) 269
PinAI ACCGGT 1 cut(s) 393
PkrI GCNGC 3 cut(s) 98, 448, 484
PpuMI RGGWCCY 1 cut(s) 459
Psp5II RGGWCCY 1 cut(s) 459
Psp6I CCWGG 1 cut(s) 461
PspGI CCWGG 1 cut(s) 461
PspN4I GGNNCC 2 cut(s) 460, 532
PspPI GGNCC 1 cut(s) 459
PspPPI RGGWCCY 1 cut(s) 459
RsaI GTAC 2 cut(s) 355, 550
RsaNI GTAC 2 cut(s) 354, 549
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 3 cut(s) 97, 447, 483
Sau96I GGNCC 1 cut(s) 459
ScaI AGTACT 2 cut(s) 355, 550
ScrFI CCNGG 2 cut(s) 271, 463
SetI ASST 8 cut(s) 22, 108, 203, 246, 303, 341, 381, 464
SfuI TTCGAA 1 cut(s) 344
SinI GGWCC 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 2 cut(s) 180, 274
SsiI CCGC 2 cut(s) 124, 446
StyD4I CCNGG 2 cut(s) 269, 461
TaiI ACGT 1 cut(s) 108
TaqI TCGA 4 cut(s) 69, 117, 344, 494
TasI AATT 2 cut(s) 180, 274
TatI WGTACW 2 cut(s) 353, 548
TauI GCSGC 1 cut(s) 449
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TseI GCWGC 2 cut(s) 96, 482
TspDTI ATGAA 1 cut(s) 426
VpaK11BI GGWCC 1 cut(s) 459
XceI RCATGY 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 21
ZrmI AGTACT 2 cut(s) 355, 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.