Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0011887

Physical Location & Seq

Genomic Coordinates Reverse (-)

79078780 .. 79079352

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G051350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTCAGGAGGAACAGAAGCTTTTCCAGATTTGGGAAGACATTGCCAGCACCCTGATTGCCACCAACTCGATTTCCTCCCTTTCAAATGCGCCGGCTGCCATGACGTGTTCTGCGTCGAACACCGCTCTTACAAGTCCCACGACTGCCCCAAATCCGATCACAACAGCCGGAAAGTGATAATTTGTGAAGTCTGCTCCACCTCCATCGAGACCACCGGCCACGACGGCGAAGAGAGCCAGAAGGTGTTGCTGGATAGGCACAGCAGGTCCGGGGATTGCGACCCGAAAAAGAAGAAGAAGCCCACGTGCCCTGTTAAGAGGTGCAAGGAGATTCTGACCTTTTCGAATAATAGTACTTGCAAGACTTGCCATTTGAAGGTCTGCCTCAAGCACCGGTTTCCGGCCGACCATGAATGTAAGAAGGAAGCAAAGGCCGTGGCCGTGGCGGCGAACGGAGGGGCCTGGAATGGAAAGTTCTTGGCTGCTTTTGCTTCGAGGAATGGGAAAGATTGTGGGAAGAGTGAGAGGGGTTCCAAGTCTCCTCCCAGTACTCCATCAGTTGGGGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010200 GO:0010243 GO:0033993 GO:0042221 GO:0042493 GO:0050896 GO:0097305 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-AN1

Protein Analysis

190

Amino Acids

20.82

Weight (kDa)

8.84

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-AN1	PF01428	15 - 52	8.8e-11	AN1-like Zinc finger
zf-AN1	PF01428	103 - 143	8.4e-09	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28210 AT3G28210
fragaria_vesca	FvH4_6g50080
malus_domestica	MD09G1039300.v1.1 MD17G1040300.v1.1
prunus_persica	Prupe.3G278700_v2.0.a1
pyrus_communis	pycom17g03610
rosa_chinensis	RchiOBHm_Chr2g0170351
rosa_laevigata	RLG00000021948
rosa_multiflora	Rmu_sc0011601.1_g000011 Rmu_sc0012445.1_g000015
rosa_roxburghii	Rroxscaffold_2G00081420
rosa_rugosa	Rorug02G0548400
rosa_samantha	Rh2AG619800 Rh2BG630700 Rh2CG600800 Rh2DG643600
rosa_wichuraiana	Rw2G051340 Rw2G051350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	255
AccB7I	CCANNNNNTGG	1 cut(s)	560
AccBSI	CCGCTC	1 cut(s)	126
AciI	CCGC	2 cut(s)	124, 446
AcoI	YGGCCR	3 cut(s)	217, 402, 438
AcvI	CACGTG	1 cut(s)	306
AfaI	GTAC	2 cut(s)	355, 550
AfiI	CCNNNNNNNGG	4 cut(s)	32, 376, 400, 560
AflIII	ACRYGT	1 cut(s)	105
AgeI	ACCGGT	1 cut(s)	393
AgsI	TTSAA	2 cut(s)	85, 376
AjiI	CACGTC	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	461
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw26I	GTCTC	2 cut(s)	203, 543
AoxI	GGCC	5 cut(s)	217, 402, 432, 438, 459
ApeKI	GCWGC	2 cut(s)	96, 482
ArsI	GACNNNNNNTTYG	2 cut(s)	355, 387
AsiGI	ACCGGT	1 cut(s)	393
Asp700I	GAANNNNTTC	1 cut(s)	21
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	267, 459
AsuC2I	CCSGG	1 cut(s)	271
AsuII	TTCGAA	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	267
BaeGI	GKGCMC	1 cut(s)	311
BbrPI	CACGTG	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	83, 469
BccI	CCATC	2 cut(s)	212, 562
BceAI	ACGGC	3 cut(s)	241, 419, 425
BciT130I	CCWGG	1 cut(s)	463
BcnI	CCSGG	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	203, 543
BfuAI	ACCTGC	1 cut(s)	255
BglI	GCCNNNNNGGC	2 cut(s)	225, 446
BisI	GCNGC	3 cut(s)	97, 447, 483
BlsI	GCNGC	3 cut(s)	98, 448, 484
BmcAI	AGTACT	2 cut(s)	355, 550
Bme1390I	CCNGG	2 cut(s)	271, 463
Bme18I	GGWCC	1 cut(s)	267
BmgBI	CACGTC	1 cut(s)	106
BmgT120I	GGNCC	2 cut(s)	267, 459
BmiI	GGNNCC	2 cut(s)	460, 532
BmrFI	CCNGG	2 cut(s)	271, 463
BmrI	ACTGGG	1 cut(s)	540
BmuI	ACTGGG	1 cut(s)	540
BpiI	GAAGAC	1 cut(s)	43
Bpu14I	TTCGAA	1 cut(s)	344
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	271
BsaAI	YACGTR	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	270, 435, 441
BsaWI	WCCGGW	1 cut(s)	393
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 376, 400, 560
Bse118I	RCCGGY	3 cut(s)	92, 215, 393
Bse1I	ACTGG	1 cut(s)	546
Bse3DI	GCAATG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	463
BseDI	CCNNGG	3 cut(s)	270, 435, 441
BseLI	CCNNNNNNNGG	4 cut(s)	32, 376, 400, 560
BseMI	GCAATG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	546
BseRI	GAGGAG	1 cut(s)	531
BseSI	GKGCMC	1 cut(s)	311
BseX3I	CGGCCG	1 cut(s)	402
BseXI	GCAGC	2 cut(s)	83, 469
Bsh1285I	CGRYCG	1 cut(s)	405
BshFI	GGCC	5 cut(s)	219, 404, 434, 440, 461
BshTI	ACCGGT	1 cut(s)	393
BsiEI	CGRYCG	1 cut(s)	405
BsiSI	CCGG	6 cut(s)	93, 169, 216, 270, 394, 401
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	4 cut(s)	32, 376, 400, 560
BsmAI	GTCTC	2 cut(s)	203, 543
BsmFI	GGGAC	1 cut(s)	121
BsnI	GGCC	5 cut(s)	219, 404, 434, 440, 461
Bso31I	GGTCTC	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	311
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	2 cut(s)	124, 446
BspANI	GGCC	5 cut(s)	219, 404, 434, 440, 461
BspLI	GGNNCC	2 cut(s)	460, 532
BspMI	ACCTGC	1 cut(s)	255
BspT104I	TTCGAA	1 cut(s)	344
BspTNI	GGTCTC	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	40
BsrFI	RCCGGY	3 cut(s)	92, 215, 393
BsrI	ACTGG	1 cut(s)	546
BssAI	RCCGGY	3 cut(s)	92, 215, 393
BssECI	CCNNGG	3 cut(s)	270, 435, 441
BssMI	GATC	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	463
Bst6I	CTCTTC	2 cut(s)	225, 512
BstAPI	GCANNNNNTGC	1 cut(s)	366
BstBAI	YACGTR	1 cut(s)	306
BstBI	TTCGAA	1 cut(s)	344
BstC8I	GCNNGC	2 cut(s)	47, 94
BstDSI	CCRYGG	2 cut(s)	435, 441
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	2 cut(s)	203, 543
BstMBI	GATC	1 cut(s)	157
BstMCI	CGRYCG	1 cut(s)	405
BstMWI	GCNNNNNNNGC	7 cut(s)	96, 225, 234, 256, 366, 446, 488
BstNI	CCWGG	1 cut(s)	463
BstSCI	CCNGG	2 cut(s)	269, 461
BstSLI	GKGCMC	1 cut(s)	311
BstV1I	GCAGC	2 cut(s)	83, 469
BstV2I	GAAGAC	1 cut(s)	43
BstZI	CGGCCG	1 cut(s)	402
BsuRI	GGCC	5 cut(s)	219, 404, 434, 440, 461
BtgI	CCRYGG	2 cut(s)	435, 441
BtrI	CACGTC	1 cut(s)	106
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	2 cut(s)	47, 94
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	3 cut(s)	92, 215, 393
Cfr13I	GGNCC	2 cut(s)	267, 459
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	2 cut(s)	354, 549
CspAI	ACCGGT	1 cut(s)	393
CspCI	CAANNNNNGTGG	2 cut(s)	417, 452
CviAII	CATG	2 cut(s)	101, 410
CviQI	GTAC	2 cut(s)	354, 549
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
EaeI	YGGCCR	3 cut(s)	217, 402, 438
EagI	CGGCCG	1 cut(s)	402
Eam1104I	CTCTTC	2 cut(s)	225, 512
EarI	CTCTTC	2 cut(s)	225, 512
EclXI	CGGCCG	1 cut(s)	402
Eco31I	GGTCTC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	267
Eco52I	CGGCCG	1 cut(s)	402
Eco72I	CACGTG	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	459
EcoRII	CCWGG	1 cut(s)	461
FaeI	CATG	2 cut(s)	104, 413
FaiI	YATR	2 cut(s)	102, 411
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	2 cut(s)	100, 409
Fnu4HI	GCNGC	3 cut(s)	97, 447, 483
Fsp4HI	GCNGC	3 cut(s)	97, 447, 483
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	3 cut(s)	97, 447, 483
HaeIII	GGCC	5 cut(s)	219, 404, 434, 440, 461
HapII	CCGG	6 cut(s)	93, 169, 216, 270, 394, 401
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	2 cut(s)	104, 413
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	6 cut(s)	93, 169, 216, 270, 394, 401
Hpy188I	TCNGA	2 cut(s)	157, 336
Hpy188III	TCNNGA	3 cut(s)	6, 26, 208
Hpy99I	CGWCG	2 cut(s)	119, 227
HpyAV	CCTTC	3 cut(s)	235, 370, 415
HpyCH4IV	ACGT	2 cut(s)	105, 305
HpyCH4V	TGCA	2 cut(s)	324, 360
HpyF10VI	GCNNNNNNNGC	7 cut(s)	96, 225, 234, 256, 366, 446, 488
HpySE526I	ACGT	2 cut(s)	105, 305
Hsp92II	CATG	2 cut(s)	104, 413
HspAI	GCGC	1 cut(s)	90
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	2 cut(s)	83, 469
MaeII	ACGT	2 cut(s)	105, 305
MalI	GATC	1 cut(s)	159
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	1 cut(s)	157
MboII	GAAGA	5 cut(s)	48, 242, 304, 307, 529
MhlI	GDGCHC	1 cut(s)	311
MluCI	AATT	1 cut(s)	180
MnlI	CCTC	8 cut(s)	86, 211, 312, 395, 449, 489, 519, 552
MroNI	GCCGGC	1 cut(s)	92
MroXI	GAANNNNTTC	1 cut(s)	21
MseI	TTAA	1 cut(s)	315
MspI	CCGG	6 cut(s)	93, 169, 216, 270, 394, 401
MspR9I	CCNGG	2 cut(s)	271, 463
MvaI	CCWGG	1 cut(s)	463
MwoI	GCNNNNNNNGC	7 cut(s)	96, 225, 234, 256, 366, 446, 488
NaeI	GCCGGC	1 cut(s)	94
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	1 cut(s)	157
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	2 cut(s)	104, 413
NlaIV	GGNNCC	2 cut(s)	460, 532
NspV	TTCGAA	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PdiI	GCCGGC	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	331
PflMI	CCANNNNNTGG	1 cut(s)	560
PinAI	ACCGGT	1 cut(s)	393
PkrI	GCNGC	3 cut(s)	98, 448, 484
PmaCI	CACGTG	1 cut(s)	306
PmlI	CACGTG	1 cut(s)	306
Ppu21I	YACGTR	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	461
PspCI	CACGTG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	461
PspN4I	GGNNCC	2 cut(s)	460, 532
PspPI	GGNCC	2 cut(s)	267, 459
RsaI	GTAC	2 cut(s)	355, 550
RsaNI	GTAC	2 cut(s)	354, 549
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	3 cut(s)	97, 447, 483
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	2 cut(s)	267, 459
ScaI	AGTACT	2 cut(s)	355, 550
ScrFI	CCNGG	2 cut(s)	271, 463
SduI	GDGCHC	1 cut(s)	311
SetI	ASST	9 cut(s)	22, 108, 203, 246, 269, 308, 323, 341, 381
SfuI	TTCGAA	1 cut(s)	344
SinI	GGWCC	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	1 cut(s)	180
SsiI	CCGC	2 cut(s)	124, 446
StyD4I	CCNGG	2 cut(s)	269, 461
TaiI	ACGT	2 cut(s)	108, 308
TaqI	TCGA	5 cut(s)	69, 117, 207, 344, 494
TasI	AATT	1 cut(s)	180
TatI	WGTACW	2 cut(s)	353, 548
TauI	GCSGC	1 cut(s)	449
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TseI	GCWGC	2 cut(s)	96, 482
TspDTI	ATGAA	1 cut(s)	426
TspGWI	ACGGA	1 cut(s)	468
Van91I	CCANNNNNTGG	1 cut(s)	560
VpaK11BI	GGWCC	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	21
ZrmI	AGTACT	2 cut(s)	355, 550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.