Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011887

Physical Location & Seq

Genomic Coordinates Reverse (-)

37339619 .. 37340194

Gene Structure 576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTCAGGAGGAACAGAAGCTTTTCCAGATTTAGGAAGTCATTGCCAGCACCCTGATTGCCACCAACTCGATTTCCTGCCTTTCAAATGCGCCGGCTGCCATGACGTGTTCTGCCTCGATCACCGCTCGTACAAGTCACATGATTGTCCCAAATCCGATCACAACAGCCGGAAAGTGATTGTTTGCGAGGTATGCTCCACCTCCATAGAGACCACTGGCCACGACGGCGAGGAGAGCCAGAAGGTGTTGCTGGAGAGGCACAGCAAGTCCGGGAATTGTGACCCGAGAAAGAAGAAGAAGCCTAGATGTCCTGTTACGAGGTGCAAGCAGATTCTGACCTTTTCGAATTGTAGTACTTGCAAGACTTGCCATCTCAAGGTCTGCCTCAAGCATCGGTTTCCGGCAGACCATGAATGCAACAAGCAAGCAAGGGCGGCGGTGGCCGTGGCGGTGAATGAAGGAGCCTGGAATGGGAAGTTCTTGGCTGCTTTTGCTTCAAGGAATGGGAAAGATTGTGGAAAGAGTGAGAGGGGTTCCAAGTCTCCTCCCAGTACTCCATCAGTTGGAGCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010200 GO:0010243 GO:0033993 GO:0042221 GO:0042493 GO:0050896 GO:0097305 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-AN1

Protein Analysis

192

Amino Acids

20.95

Weight (kDa)

8.82

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-AN1	PF01428	15 - 52	2.1e-11	AN1-like Zinc finger
zf-AN1	PF01428	103 - 143	7.9e-08	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28210 AT3G28210
fragaria_vesca	FvH4_6g50080
malus_domestica	MD09G1039300.v1.1 MD17G1040300.v1.1
prunus_persica	Prupe.3G278700_v2.0.a1
pyrus_communis	pycom17g03610
rosa_chinensis	RchiOBHm_Chr2g0170351
rosa_laevigata	RLG00000021948
rosa_multiflora	Rmu_sc0011601.1_g000011 Rmu_sc0012445.1_g000015
rosa_roxburghii	Rroxscaffold_2G00081420
rosa_rugosa	Rorug02G0548400
rosa_samantha	Rh2AG619800 Rh2BG630700 Rh2CG600800 Rh2DG643600
rosa_wichuraiana	Rw2G051340 Rw2G051350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	563
AccBSI	CCGCTC	1 cut(s)	126
AciI	CCGC	4 cut(s)	124, 434, 437, 449
AcoI	YGGCCR	2 cut(s)	217, 441
AfaI	GTAC	3 cut(s)	131, 355, 553
AfiI	CCNNNNNNNGG	4 cut(s)	32, 376, 471, 563
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	85, 498
AjiI	CACGTC	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	464
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw26I	GTCTC	2 cut(s)	203, 546
AlwNI	CAGNNNCTG	1 cut(s)	334
Ama87I	CYCGRG	1 cut(s)	283
AoxI	GGCC	2 cut(s)	217, 441
ApeKI	GCWGC	2 cut(s)	96, 485
Asp700I	GAANNNNTTC	1 cut(s)	21
AspLEI	GCGC	1 cut(s)	92
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	113, 463
AsuII	TTCGAA	1 cut(s)	344
AvaI	CYCGRG	1 cut(s)	283
BalI	TGGCCA	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	83, 472
BccI	CCATC	2 cut(s)	378, 565
BceAI	ACGGC	2 cut(s)	241, 428
BciT130I	CCWGG	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	203, 546
BfaI	CTAG	1 cut(s)	303
BglI	GCCNNNNNGGC	1 cut(s)	225
BisI	GCNGC	3 cut(s)	97, 435, 486
BlsI	GCNGC	3 cut(s)	98, 436, 487
BmcAI	AGTACT	2 cut(s)	355, 553
Bme1390I	CCNGG	2 cut(s)	271, 466
BmeT110I	CYCGRG	1 cut(s)	283
BmgBI	CACGTC	1 cut(s)	106
BmiI	GGNNCC	2 cut(s)	463, 535
BmrFI	CCNGG	2 cut(s)	271, 466
BmrI	ACTGGG	1 cut(s)	543
BmsI	GCATC	1 cut(s)	400
BmuI	ACTGGG	1 cut(s)	543
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
BpmI	CTGGAG	1 cut(s)	272
Bpu14I	TTCGAA	1 cut(s)	344
BpuEI	CTTGAG	2 cut(s)	359, 371
BpuMI	CCSGG	1 cut(s)	271
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 376, 471, 563
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	2 cut(s)	220, 549
Bse3DI	GCAATG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	466
BseDI	CCNNGG	1 cut(s)	444
BseLI	CCNNNNNNNGG	4 cut(s)	32, 376, 471, 563
BseMI	GCAATG	1 cut(s)	40
BseNI	ACTGG	2 cut(s)	220, 549
BseRI	GAGGAG	2 cut(s)	245, 534
BseXI	GCAGC	2 cut(s)	83, 472
BshFI	GGCC	2 cut(s)	219, 443
BsiHKCI	CYCGRG	1 cut(s)	283
BsiSI	CCGG	4 cut(s)	93, 169, 270, 401
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	4 cut(s)	32, 376, 471, 563
BsmAI	GTCTC	2 cut(s)	203, 546
BsmFI	GGGAC	1 cut(s)	132
BsmI	GAATGC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	219, 443
Bso31I	GGTCTC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	283
Bsp119I	TTCGAA	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	118, 157
BspACI	CCGC	4 cut(s)	124, 434, 437, 449
BspANI	GGCC	2 cut(s)	219, 443
BspLI	GGNNCC	2 cut(s)	463, 535
BspT104I	TTCGAA	1 cut(s)	344
BspTNI	GGTCTC	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	40
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	220, 549
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	2 cut(s)	118, 157
Bst2UI	CCWGG	1 cut(s)	466
BstAPI	GCANNNNNTGC	1 cut(s)	366
BstBI	TTCGAA	1 cut(s)	344
BstC8I	GCNNGC	4 cut(s)	47, 94, 326, 426
BstDSI	CCRYGG	1 cut(s)	444
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	2 cut(s)	121, 160
BstMAI	GTCTC	2 cut(s)	203, 546
BstMBI	GATC	2 cut(s)	118, 157
BstMWI	GCNNNNNNNGC	9 cut(s)	96, 192, 225, 234, 256, 366, 434, 440, 491
BstNI	CCWGG	1 cut(s)	466
BstSCI	CCNGG	2 cut(s)	269, 464
BstV1I	GCAGC	2 cut(s)	83, 472
BsuRI	GGCC	2 cut(s)	219, 443
BtgI	CCRYGG	1 cut(s)	444
BtrI	CACGTC	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	4 cut(s)	47, 94, 326, 426
CaiI	CAGNNNCTG	1 cut(s)	334
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	130, 354, 552
CviAII	CATG	3 cut(s)	101, 140, 410
CviJI	RGCY	9 cut(s)	20, 96, 168, 219, 237, 301, 443, 464, 485
CviKI_1	RGCY	9 cut(s)	20, 96, 168, 219, 237, 301, 443, 464, 485
CviQI	GTAC	3 cut(s)	130, 354, 552
DpnI	GATC	2 cut(s)	120, 159
DpnII	GATC	2 cut(s)	118, 157
EaeI	YGGCCR	2 cut(s)	217, 441
Eco31I	GGTCTC	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	464
FaeI	CATG	3 cut(s)	104, 143, 413
FaiI	YATR	5 cut(s)	102, 141, 193, 206, 411
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	3 cut(s)	100, 139, 409
Fnu4HI	GCNGC	3 cut(s)	97, 435, 486
Fsp4HI	GCNGC	3 cut(s)	97, 435, 486
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	3 cut(s)	97, 435, 486
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	2 cut(s)	219, 443
HapII	CCGG	4 cut(s)	93, 169, 270, 401
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	3 cut(s)	104, 143, 413
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	4 cut(s)	93, 169, 270, 401
HphI	GGTGA	2 cut(s)	113, 463
Hpy188I	TCNGA	2 cut(s)	157, 336
Hpy188III	TCNNGA	2 cut(s)	6, 26
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	235, 452
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	3 cut(s)	324, 360, 417
HpyF10VI	GCNNNNNNNGC	9 cut(s)	96, 192, 225, 234, 256, 366, 434, 440, 491
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	3 cut(s)	104, 143, 413
HspAI	GCGC	1 cut(s)	90
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	118, 157
LmnI	GCTCC	3 cut(s)	200, 461, 566
Lsp1109I	GCAGC	2 cut(s)	83, 472
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	3 cut(s)	135, 278, 313
MalI	GATC	2 cut(s)	120, 159
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	2 cut(s)	118, 157
MboII	GAAGA	2 cut(s)	304, 307
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	2 cut(s)	274, 346
MluNI	TGGCCA	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	544
MnlI	CCTC	9 cut(s)	125, 181, 211, 223, 249, 312, 395, 522, 555
Mox20I	TGGCCA	1 cut(s)	219
MroNI	GCCGGC	1 cut(s)	92
MroXI	GAANNNNTTC	1 cut(s)	21
MscI	TGGCCA	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	219
MspI	CCGG	4 cut(s)	93, 169, 270, 401
MspR9I	CCNGG	2 cut(s)	271, 466
Mva1269I	GAATGC	1 cut(s)	419
MvaI	CCWGG	1 cut(s)	466
MwoI	GCNNNNNNNGC	9 cut(s)	96, 192, 225, 234, 256, 366, 434, 440, 491
NaeI	GCCGGC	1 cut(s)	94
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	2 cut(s)	118, 157
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	3 cut(s)	104, 143, 413
NlaIV	GGNNCC	2 cut(s)	463, 535
NmuCI	GTSAC	2 cut(s)	135, 278
NspV	TTCGAA	1 cut(s)	344
PctI	GAATGC	1 cut(s)	419
PdiI	GCCGGC	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	331
PflMI	CCANNNNNTGG	1 cut(s)	563
PfoI	TCCNGGA	1 cut(s)	269
PkrI	GCNGC	3 cut(s)	98, 436, 487
Psp6I	CCWGG	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	464
PspN4I	GGNNCC	2 cut(s)	463, 535
PstNI	CAGNNNCTG	1 cut(s)	334
RsaI	GTAC	3 cut(s)	131, 355, 553
RsaNI	GTAC	3 cut(s)	130, 354, 552
SatI	GCNGC	3 cut(s)	97, 435, 486
Sau3AI	GATC	2 cut(s)	118, 157
ScaI	AGTACT	2 cut(s)	355, 553
ScrFI	CCNGG	2 cut(s)	271, 466
SetI	ASST	8 cut(s)	22, 108, 192, 203, 246, 323, 341, 381
SfaNI	GCATC	1 cut(s)	400
SfuI	TTCGAA	1 cut(s)	344
SmlI	CTYRAG	2 cut(s)	374, 386
SmoI	CTYRAG	2 cut(s)	374, 386
Sse9I	AATT	2 cut(s)	274, 346
SsiI	CCGC	4 cut(s)	124, 434, 437, 449
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	269, 464
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	3 cut(s)	69, 117, 344
TasI	AATT	2 cut(s)	274, 346
TatI	WGTACW	2 cut(s)	353, 551
TauI	GCSGC	1 cut(s)	437
TfiI	GAWTC	1 cut(s)	331
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	2 cut(s)	135, 278
TseI	GCWGC	2 cut(s)	96, 485
Tsp45I	GTSAC	2 cut(s)	135, 278
TspDTI	ATGAA	2 cut(s)	426, 471
TspRI	CASTG	1 cut(s)	220
Van91I	CCANNNNNTGG	1 cut(s)	563
XmnI	GAANNNNTTC	1 cut(s)	21
XspI	CTAG	1 cut(s)	303
ZrmI	AGTACT	2 cut(s)	355, 553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.