Rh2DG643600

Zinc finger AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0011887
Physical Location & Seq
Reverse (-)
87070276 .. 87070848
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG643600.1

Sequence Viewer

Length: 573 bp
ATGTCAGGAGGAACAGAAGCTTTTCCAGATTTGGGAAGACATTGCCAGCACCCTGATTGCCACCAACTCGATTTCCTCCCTTTCAAATGCGCCGGCTGCCATGACGTGTTCTGCGTCGAACACCGCTCTTACAAGTCCCACGACTGCCCCAAATCCGATCACAACAGCCGGAAAGTGATAATTTGTGAAGTCTGCTCCACCTCCATCGAGACCACCGGCCACGACGGCGAAGAGAGCCAGAAGGTGTTGCTGGAGAGGCACAGCAAGTCCGGGGATTGCGACCCGAAAAAGAAGAAGAAGCCCACATGCCCTGTTAAGAGGTGCAAGGAGATTCTGACCTTTTCGAATAATAGTACTTGCAAGACTTGCCATTTGAAGGTCTGCCTCAAGCACCGGTTCCAGGCCGACCATGAATGTAAGAAGGAAGCGAAGGCGGTGCCTGTGGCGGCGAATGGAGGGGCCTGGAATGGGAAGTTCTTGGCTGCTTTTGCTTCGAGGAATGGGAAAGATTGTGGGAAGAGTGAGAGGGGTTCCAAGTCTCCTCCCAGTACTCCTTCAGTTAGGGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010200 GO:0010243 GO:0033993 GO:0042221 GO:0042493 GO:0050896 GO:0097305 GO:1901698 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-AN1

Protein Analysis

190

Amino Acids

20.96

Weight (kDa)

8.91

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-AN1 PF01428 15 - 52 8.8e-11 AN1-like Zinc finger
zf-AN1 PF01428 103 - 143 4.8e-08 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28210 AT3G28210
fragaria_vesca FvH4_6g50080
malus_domestica MD09G1039300.v1.1 MD17G1040300.v1.1
prunus_persica Prupe.3G278700_v2.0.a1
pyrus_communis pycom17g03610
rosa_chinensis RchiOBHm_Chr2g0170351
rosa_laevigata RLG00000021948
rosa_multiflora Rmu_sc0011601.1_g000011 Rmu_sc0012445.1_g000015
rosa_roxburghii Rroxscaffold_2G00081420
rosa_rugosa Rorug02G0548400
rosa_samantha Rh2AG619800 Rh2BG630700 Rh2CG600800 Rh2DG643600
rosa_wichuraiana Rw2G051340 Rw2G051350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 436
AccBSI CCGCTC 1 cut(s) 126
AciI CCGC 3 cut(s) 124, 434, 446
AcoI YGGCCR 1 cut(s) 217
AcuI CTGAAG 1 cut(s) 540
AfaI GTAC 2 cut(s) 355, 550
AfiI CCNNNNNNNGG 4 cut(s) 32, 376, 400, 468
AflIII ACRYGT 1 cut(s) 105
AgeI ACCGGT 1 cut(s) 393
AgsI TTSAA 2 cut(s) 85, 376
AjiI CACGTC 1 cut(s) 106
AjnI CCWGG 2 cut(s) 399, 461
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw26I GTCTC 2 cut(s) 203, 543
AoxI GGCC 3 cut(s) 217, 402, 459
ApeKI GCWGC 2 cut(s) 96, 482
ArsI GACNNNNNNTTYG 2 cut(s) 355, 387
AsiGI ACCGGT 1 cut(s) 393
Asp700I GAANNNNTTC 1 cut(s) 21
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 459
AsuC2I CCSGG 1 cut(s) 271
AsuII TTCGAA 1 cut(s) 344
BanI GGYRCC 1 cut(s) 436
BbsI GAAGAC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 83, 469
BccI CCATC 1 cut(s) 212
BceAI ACGGC 1 cut(s) 241
BcgI CGANNNNNNTGC 2 cut(s) 418, 452
BciT130I CCWGG 2 cut(s) 401, 463
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 2 cut(s) 203, 543
BglI GCCNNNNNGGC 1 cut(s) 225
BisI GCNGC 3 cut(s) 97, 447, 483
BlsI GCNGC 3 cut(s) 98, 448, 484
BmcAI AGTACT 2 cut(s) 355, 550
Bme1390I CCNGG 3 cut(s) 271, 401, 463
BmgBI CACGTC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 459
BmiI GGNNCC 4 cut(s) 398, 438, 460, 532
BmrFI CCNGG 3 cut(s) 271, 401, 463
BmrI ACTGGG 1 cut(s) 540
BmuI ACTGGG 1 cut(s) 540
BpiI GAAGAC 1 cut(s) 43
BpmI CTGGAG 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 371
BpuMI CCSGG 1 cut(s) 271
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 270
BsaWI WCCGGW 1 cut(s) 393
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 376, 400, 468
Bse118I RCCGGY 3 cut(s) 92, 215, 393
Bse1I ACTGG 1 cut(s) 546
Bse3DI GCAATG 1 cut(s) 40
BseBI CCWGG 2 cut(s) 401, 463
BseDI CCNNGG 1 cut(s) 270
BseLI CCNNNNNNNGG 4 cut(s) 32, 376, 400, 468
BseMI GCAATG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 546
BseRI GAGGAG 1 cut(s) 531
BseXI GCAGC 2 cut(s) 83, 469
BshFI GGCC 3 cut(s) 219, 404, 461
BshNI GGYRCC 1 cut(s) 436
BshTI ACCGGT 1 cut(s) 393
BsiSI CCGG 5 cut(s) 93, 169, 216, 270, 394
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 4 cut(s) 32, 376, 400, 468
BsmAI GTCTC 2 cut(s) 203, 543
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 3 cut(s) 219, 404, 461
Bso31I GGTCTC 1 cut(s) 203
Bsp119I TTCGAA 1 cut(s) 344
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 3 cut(s) 124, 434, 446
BspANI GGCC 3 cut(s) 219, 404, 461
BspLI GGNNCC 4 cut(s) 398, 438, 460, 532
BspT104I TTCGAA 1 cut(s) 344
BspT107I GGYRCC 1 cut(s) 436
BspTNI GGTCTC 1 cut(s) 203
BsrBI CCGCTC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 40
BsrFI RCCGGY 3 cut(s) 92, 215, 393
BsrI ACTGG 1 cut(s) 546
BssAI RCCGGY 3 cut(s) 92, 215, 393
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 1 cut(s) 157
Bst2UI CCWGG 2 cut(s) 401, 463
Bst6I CTCTTC 2 cut(s) 225, 512
BstAPI GCANNNNNTGC 1 cut(s) 366
BstBI TTCGAA 1 cut(s) 344
BstC8I GCNNGC 2 cut(s) 47, 94
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 2 cut(s) 203, 543
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 6 cut(s) 96, 225, 234, 256, 366, 488
BstNI CCWGG 2 cut(s) 401, 463
BstNSI RCATGY 1 cut(s) 309
BstSCI CCNGG 3 cut(s) 269, 399, 461
BstV1I GCAGC 2 cut(s) 83, 469
BstV2I GAAGAC 1 cut(s) 43
BsuRI GGCC 3 cut(s) 219, 404, 461
BtrI CACGTC 1 cut(s) 106
Cac8I GCNNGC 2 cut(s) 47, 94
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 3 cut(s) 92, 215, 393
Cfr13I GGNCC 1 cut(s) 459
CseI GACGC 1 cut(s) 103
Csp6I GTAC 2 cut(s) 354, 549
CspAI ACCGGT 1 cut(s) 393
CviAII CATG 3 cut(s) 101, 306, 410
CviJI RGCY 9 cut(s) 20, 96, 168, 219, 237, 301, 404, 461, 482
CviKI_1 RGCY 9 cut(s) 20, 96, 168, 219, 237, 301, 404, 461, 482
CviQI GTAC 2 cut(s) 354, 549
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 217
Eam1104I CTCTTC 2 cut(s) 225, 512
EarI CTCTTC 2 cut(s) 225, 512
Eco31I GGTCTC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 540
EcoO109I RGGNCCY 1 cut(s) 459
EcoRII CCWGG 2 cut(s) 399, 461
FaeI CATG 3 cut(s) 104, 309, 413
FaiI YATR 3 cut(s) 102, 307, 411
FaqI GGGAC 1 cut(s) 121
FatI CATG 3 cut(s) 100, 305, 409
Fnu4HI GCNGC 3 cut(s) 97, 447, 483
Fsp4HI GCNGC 3 cut(s) 97, 447, 483
GlaI GCGC 1 cut(s) 91
GluI GCNGC 3 cut(s) 97, 447, 483
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 3 cut(s) 219, 404, 461
HapII CCGG 5 cut(s) 93, 169, 216, 270, 394
HgaI GACGC 1 cut(s) 103
HhaI GCGC 1 cut(s) 92
Hin1II CATG 3 cut(s) 104, 309, 413
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 1 cut(s) 331
HpaII CCGG 5 cut(s) 93, 169, 216, 270, 394
Hpy188I TCNGA 2 cut(s) 157, 336
Hpy188III TCNNGA 3 cut(s) 6, 26, 208
Hpy99I CGWCG 2 cut(s) 119, 227
HpyAV CCTTC 5 cut(s) 235, 370, 415, 424, 564
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 2 cut(s) 324, 360
HpyF10VI GCNNNNNNNGC 6 cut(s) 96, 225, 234, 256, 366, 488
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 3 cut(s) 104, 309, 413
HspAI GCGC 1 cut(s) 90
KroI GCCGGC 1 cut(s) 92
KroNI GCCGGC 1 cut(s) 94
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 200
Lsp1109I GCAGC 2 cut(s) 83, 469
MaeII ACGT 1 cut(s) 105
MalI GATC 1 cut(s) 159
MbiI CCGCTC 1 cut(s) 126
MboI GATC 1 cut(s) 157
MboII GAAGA 5 cut(s) 48, 242, 304, 307, 529
MluCI AATT 1 cut(s) 180
MnlI CCTC 9 cut(s) 86, 211, 249, 312, 395, 449, 489, 519, 552
MroNI GCCGGC 1 cut(s) 92
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 1 cut(s) 315
MspI CCGG 5 cut(s) 93, 169, 216, 270, 394
MspR9I CCNGG 3 cut(s) 271, 401, 463
MvaI CCWGG 2 cut(s) 401, 463
MwoI GCNNNNNNNGC 6 cut(s) 96, 225, 234, 256, 366, 488
NaeI GCCGGC 1 cut(s) 94
NciI CCSGG 1 cut(s) 271
NdeII GATC 1 cut(s) 157
NgoMIV GCCGGC 1 cut(s) 92
NlaIII CATG 3 cut(s) 104, 309, 413
NlaIV GGNNCC 4 cut(s) 398, 438, 460, 532
NspI RCATGY 1 cut(s) 309
NspV TTCGAA 1 cut(s) 344
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PdiI GCCGGC 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 331
PinAI ACCGGT 1 cut(s) 393
PkrI GCNGC 3 cut(s) 98, 448, 484
Psp6I CCWGG 2 cut(s) 399, 461
PspGI CCWGG 2 cut(s) 399, 461
PspN4I GGNNCC 4 cut(s) 398, 438, 460, 532
PspPI GGNCC 1 cut(s) 459
RsaI GTAC 2 cut(s) 355, 550
RsaNI GTAC 2 cut(s) 354, 549
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 3 cut(s) 97, 447, 483
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 1 cut(s) 459
ScaI AGTACT 2 cut(s) 355, 550
ScrFI CCNGG 3 cut(s) 271, 401, 463
SetI ASST 7 cut(s) 22, 108, 203, 246, 323, 341, 381
SfuI TTCGAA 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 1 cut(s) 180
SsiI CCGC 3 cut(s) 124, 434, 446
StyD4I CCNGG 3 cut(s) 269, 399, 461
TaiI ACGT 1 cut(s) 108
TaqI TCGA 5 cut(s) 69, 117, 207, 344, 494
TasI AATT 1 cut(s) 180
TatI WGTACW 2 cut(s) 353, 548
TauI GCSGC 1 cut(s) 449
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TseI GCWGC 2 cut(s) 96, 482
TspDTI ATGAA 1 cut(s) 426
XceI RCATGY 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 21
ZrmI AGTACT 2 cut(s) 355, 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.