pycom17g03610

Zinc finger AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011887
Physical Location & Seq
Forward (+)
2419684 .. 2420342
659 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g03610.2

Sequence Viewer

Length: 579 bp
ATGACAGGAGGAACAGAAGCTTTCCCGGATTTGGGAAGACACTGCCAGCTCTCCGATTGCCACCAGCTCGATTTCCTCCCCTTCCAATGTGACGGTTGTAGTAAGGTTTTCTGCGTTGAGCATCGGTCCTACAAGTCCCACGAATGCCCGAAATCGGACCACAACAGCAGAAAGGTGGTGGTTTGCGAAATCTGCTCGGCCTCCATAGAAACCACCGGCCGCGACGGCGAACAGGACCAGAAATTGCTGTTGGAGAAGCACGCCAAGTCCGGAAATTGCGACCCCAGAAAGAAGAAGAAACCAACCTGCCCGGTTCGGCGGTGTAAGGAGATTCTCACGTTTTCGAATACCAGCACCTGCAAGACTTGCCAGATCAAGGTTTGCCTCAAGCACCGGTTCCCGGCCGACCATGTTTGCAGGAAGCAGACGGCGGCACAGCCGTCGTTGGCGGGGAAGGCTGTGAGCTGGAACGACAAGTTCATGGCTGCTTTTGCTTCGAGGGAAGGGAAAGAATGTGGGAAGAGTGCGCGGGATTCCAAGTCTTCGGCTTCGAGAGCGCCTTCTGTTCGAGCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010200 GO:0010243 GO:0033993 GO:0042221 GO:0042493 GO:0050896 GO:0097305 GO:1901698 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-AN1

Protein Analysis

193

Amino Acids

21.32

Weight (kDa)

9.13

Isoelectric Point (pI)

44.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28210 AT3G28210
fragaria_vesca FvH4_6g50080
malus_domestica MD09G1039300.v1.1 MD17G1040300.v1.1
prunus_persica Prupe.3G278700_v2.0.a1
pyrus_communis pycom17g03610
rosa_chinensis RchiOBHm_Chr2g0170351
rosa_laevigata RLG00000021948
rosa_multiflora Rmu_sc0011601.1_g000011 Rmu_sc0012445.1_g000015
rosa_roxburghii Rroxscaffold_2G00081420
rosa_rugosa Rorug02G0548400
rosa_samantha Rh2AG619800 Rh2BG630700 Rh2CG600800 Rh2DG643600
rosa_wichuraiana Rw2G051340 Rw2G051350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 365
Acc36I ACCTGC 2 cut(s) 314, 365
AccII CGCG 2 cut(s) 222, 529
AccIII TCCGGA 1 cut(s) 269
AciI CCGC 5 cut(s) 220, 319, 431, 449, 529
AcoI YGGCCR 2 cut(s) 217, 402
AfiI CCNNNNNNNGG 5 cut(s) 31, 32, 154, 376, 400
AgeI ACCGGT 1 cut(s) 393
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 5 cut(s) 20, 49, 67, 465, 572
AluI AGCT 5 cut(s) 20, 49, 67, 465, 572
AlwNI CAGNNNCTG 1 cut(s) 357
Aor13HI TCCGGA 1 cut(s) 269
AoxI GGCC 3 cut(s) 198, 217, 402
ApeKI GCWGC 1 cut(s) 485
AsiGI ACCGGT 1 cut(s) 393
AspLEI GCGC 2 cut(s) 529, 559
AspS9I GGNCC 3 cut(s) 126, 157, 235
AsuC2I CCSGG 3 cut(s) 26, 311, 401
AsuII TTCGAA 1 cut(s) 344
AvaII GGWCC 3 cut(s) 126, 157, 235
BbsI GAAGAC 2 cut(s) 43, 534
BbvI GCAGC 1 cut(s) 472
BceAI ACGGC 3 cut(s) 241, 424, 444
BcgI CGANNNNNNTGC 2 cut(s) 423, 457
BcnI CCSGG 3 cut(s) 26, 311, 401
BfoI RGCGCY 1 cut(s) 560
BfuAI ACCTGC 2 cut(s) 314, 365
BglI GCCNNNNNGGC 1 cut(s) 225
BisI GCNGC 3 cut(s) 220, 432, 486
BlsI GCNGC 3 cut(s) 221, 433, 487
Bme1390I CCNGG 3 cut(s) 26, 311, 401
Bme18I GGWCC 3 cut(s) 126, 157, 235
BmgT120I GGNCC 3 cut(s) 126, 157, 235
BmiI GGNNCC 1 cut(s) 398
BmrFI CCNGG 3 cut(s) 26, 311, 401
BmsI GCATC 1 cut(s) 130
BpiI GAAGAC 2 cut(s) 43, 534
Bpu14I TTCGAA 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 371
BpuMI CCSGG 3 cut(s) 26, 311, 401
BsaWI WCCGGW 2 cut(s) 269, 393
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 32, 154, 376, 400
Bse118I RCCGGY 2 cut(s) 215, 393
BseAI TCCGGA 1 cut(s) 269
BseLI CCNNNNNNNGG 5 cut(s) 31, 32, 154, 376, 400
BseX3I CGGCCG 2 cut(s) 217, 402
BseXI GCAGC 1 cut(s) 472
Bsh1236I CGCG 2 cut(s) 222, 529
Bsh1285I CGRYCG 2 cut(s) 220, 405
BshFI GGCC 3 cut(s) 200, 219, 404
BshTI ACCGGT 1 cut(s) 393
BsiEI CGRYCG 2 cut(s) 220, 405
BsiSI CCGG 6 cut(s) 26, 216, 270, 311, 394, 401
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 5 cut(s) 31, 32, 154, 376, 400
BsmFI GGGAC 1 cut(s) 121
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 3 cut(s) 200, 219, 404
Bsp119I TTCGAA 1 cut(s) 344
Bsp13I TCCGGA 1 cut(s) 269
Bsp143I GATC 1 cut(s) 372
BspACI CCGC 5 cut(s) 220, 319, 431, 449, 529
BspANI GGCC 3 cut(s) 200, 219, 404
BspEI TCCGGA 1 cut(s) 269
BspFNI CGCG 2 cut(s) 222, 529
BspLI GGNNCC 1 cut(s) 398
BspMI ACCTGC 2 cut(s) 314, 365
BspT104I TTCGAA 1 cut(s) 344
BsrFI RCCGGY 2 cut(s) 215, 393
BssAI RCCGGY 2 cut(s) 215, 393
BssMI GATC 1 cut(s) 372
Bst4CI ACNGT 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 515
BstAPI GCANNNNNTGC 1 cut(s) 366
BstBI TTCGAA 1 cut(s) 344
BstC8I GCNNGC 2 cut(s) 47, 261
BstFNI CGCG 2 cut(s) 222, 529
BstH2I RGCGCY 1 cut(s) 560
BstHHI GCGC 2 cut(s) 529, 559
BstKTI GATC 1 cut(s) 375
BstMBI GATC 1 cut(s) 372
BstMCI CGRYCG 2 cut(s) 220, 405
BstMWI GCNNNNNNNGC 6 cut(s) 192, 225, 366, 455, 491, 554
BstSCI CCNGG 3 cut(s) 24, 309, 399
BstUI CGCG 2 cut(s) 222, 529
BstV1I GCAGC 1 cut(s) 472
BstV2I GAAGAC 2 cut(s) 43, 534
BstZI CGGCCG 2 cut(s) 217, 402
BsuRI GGCC 3 cut(s) 200, 219, 404
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 40
BveI ACCTGC 2 cut(s) 314, 365
Cac8I GCNNGC 2 cut(s) 47, 261
CaiI CAGNNNCTG 1 cut(s) 357
CfoI GCGC 2 cut(s) 529, 559
Cfr10I RCCGGY 2 cut(s) 215, 393
Cfr13I GGNCC 3 cut(s) 126, 157, 235
CspAI ACCGGT 1 cut(s) 393
CviAII CATG 2 cut(s) 410, 481
DpnI GATC 1 cut(s) 374
DpnII GATC 1 cut(s) 372
EaeI YGGCCR 2 cut(s) 217, 402
EagI CGGCCG 2 cut(s) 217, 402
Eam1104I CTCTTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 515
EclXI CGGCCG 2 cut(s) 217, 402
Eco47I GGWCC 3 cut(s) 126, 157, 235
Eco52I CGGCCG 2 cut(s) 217, 402
FaeI CATG 2 cut(s) 413, 484
FaiI YATR 3 cut(s) 206, 411, 482
FaqI GGGAC 1 cut(s) 121
FatI CATG 2 cut(s) 409, 480
FauI CCCGC 2 cut(s) 442, 522
Fnu4HI GCNGC 3 cut(s) 220, 432, 486
Fsp4HI GCNGC 3 cut(s) 220, 432, 486
GlaI GCGC 2 cut(s) 528, 558
GluI GCNGC 3 cut(s) 220, 432, 486
HaeII RGCGCY 1 cut(s) 560
HaeIII GGCC 3 cut(s) 200, 219, 404
HapII CCGG 6 cut(s) 26, 216, 270, 311, 394, 401
HhaI GCGC 2 cut(s) 529, 559
Hin1II CATG 2 cut(s) 413, 484
Hin6I GCGC 2 cut(s) 527, 557
HinP1I GCGC 2 cut(s) 527, 557
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 2 cut(s) 331, 533
HpaII CCGG 6 cut(s) 26, 216, 270, 311, 394, 401
Hpy188I TCNGA 2 cut(s) 55, 157
Hpy188III TCNNGA 2 cut(s) 270, 552
Hpy99I CGWCG 2 cut(s) 227, 445
HpyAV CCTTC 4 cut(s) 91, 448, 497, 570
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 2 cut(s) 360, 417
HpyF10VI GCNNNNNNNGC 6 cut(s) 192, 225, 366, 455, 491, 554
HpySE526I ACGT 1 cut(s) 338
Hsp92II CATG 2 cut(s) 413, 484
HspAI GCGC 2 cut(s) 527, 557
Kpn2I TCCGGA 1 cut(s) 269
Kzo9I GATC 1 cut(s) 372
Lsp1109I GCAGC 1 cut(s) 472
LweI GCATC 1 cut(s) 130
MaeII ACGT 1 cut(s) 338
MaeIII GTNAC 1 cut(s) 89
MalI GATC 1 cut(s) 374
MboI GATC 1 cut(s) 372
MboII GAAGA 5 cut(s) 48, 304, 307, 532, 534
MluCI AATT 2 cut(s) 242, 274
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 4 cut(s) 86, 211, 395, 492
MroI TCCGGA 1 cut(s) 269
MspI CCGG 6 cut(s) 26, 216, 270, 311, 394, 401
MspR9I CCNGG 3 cut(s) 26, 311, 401
Mva1269I GAATGC 1 cut(s) 149
MvnI CGCG 2 cut(s) 222, 529
MwoI GCNNNNNNNGC 6 cut(s) 192, 225, 366, 455, 491, 554
NciI CCSGG 3 cut(s) 26, 311, 401
NdeII GATC 1 cut(s) 372
NlaIII CATG 2 cut(s) 413, 484
NlaIV GGNNCC 1 cut(s) 398
NmeAIII GCCGAG 1 cut(s) 176
NmuCI GTSAC 1 cut(s) 89
NspV TTCGAA 1 cut(s) 344
PaqCI CACCTGC 1 cut(s) 365
PctI GAATGC 1 cut(s) 149
PfeI GAWTC 2 cut(s) 331, 533
PfoI TCCNGGA 1 cut(s) 24
PinAI ACCGGT 1 cut(s) 393
PkrI GCNGC 3 cut(s) 221, 433, 487
PspN4I GGNNCC 1 cut(s) 398
PspPI GGNCC 3 cut(s) 126, 157, 235
PstNI CAGNNNCTG 1 cut(s) 357
SatI GCNGC 3 cut(s) 220, 432, 486
Sau3AI GATC 1 cut(s) 372
Sau96I GGNCC 3 cut(s) 126, 157, 235
ScrFI CCNGG 3 cut(s) 26, 311, 401
SfaNI GCATC 1 cut(s) 130
SfuI TTCGAA 1 cut(s) 344
SinI GGWCC 3 cut(s) 126, 157, 235
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 2 cut(s) 242, 274
SsiI CCGC 5 cut(s) 220, 319, 431, 449, 529
StyD4I CCNGG 3 cut(s) 24, 309, 399
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 1 cut(s) 341
TaqI TCGA 5 cut(s) 69, 344, 497, 551, 568
TaqII GACCGA 1 cut(s) 114
TasI AATT 2 cut(s) 242, 274
TauI GCSGC 2 cut(s) 222, 434
TfiI GAWTC 2 cut(s) 331, 533
TscAI CASTG 1 cut(s) 47
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 1 cut(s) 485
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 469
TspRI CASTG 1 cut(s) 47
VpaK11BI GGWCC 3 cut(s) 126, 157, 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.