Rroxscaffold_2G00081420

Zinc finger AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011887
Physical Location & Seq
Forward (+)
4457901 .. 4458473
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00081420.1

Sequence Viewer

Length: 573 bp
ATGTCAGGAGGAACAGAAGCTTTTCCAGATTTGGGAAGACATTGCCAGCACCCTGATTGCCACCAACTCGATTTCCTCCCTTTCAAATGCGCCGGCTGCCATGACGTGTTCTGCGTCGAACACCGCTCTTACAAGTCCCACGACTGCCCCAAATCCGACCACAACAGCCGGAAAGTGATAATTTGTGAAGTCTGCTCCACCTCCATAGAGATCTCCGGCCACGCCGGCGAAGAGAGCCAGAAGGTGTTGCTGGAGAGGCACAGCAAGTCCGGAGATTGCGACCCGAAAAAGAAGAAGAAGCCCACATGCCCTGTTAAGAGGTGCAAGGAGATTCTGACCTTTTCGAATAATAGTACTTGCAAGACTTGCCATTTGAAGGTCTGCCTCAAGCACCGGTTTCCGGCCGACCATGAATGTAAGAAGGAAGCGAAGGCGGTGCCTGTGGCGGCGCATGGAGGGGCCTGGAATGGGAAGTTCTTGGCTGCTTTTGCTTCGAGGAATGGGAAAGATTGTGGGAAGAGTGAGAGGGGTTCCAAGTCTCCTCCCAGTACTCCATCAGTTAGGGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010200 GO:0010243 GO:0033993 GO:0042221 GO:0042493 GO:0050896 GO:0097305 GO:1901698 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-AN1

Protein Analysis

190

Amino Acids

20.9

Weight (kDa)

8.99

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-AN1 PF01428 15 - 52 8.8e-11 AN1-like Zinc finger
zf-AN1 PF01428 103 - 143 8.4e-09 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28210 AT3G28210
fragaria_vesca FvH4_6g50080
malus_domestica MD09G1039300.v1.1 MD17G1040300.v1.1
prunus_persica Prupe.3G278700_v2.0.a1
pyrus_communis pycom17g03610
rosa_chinensis RchiOBHm_Chr2g0170351
rosa_laevigata RLG00000021948
rosa_multiflora Rmu_sc0011601.1_g000011 Rmu_sc0012445.1_g000015
rosa_roxburghii Rroxscaffold_2G00081420
rosa_rugosa Rorug02G0548400
rosa_samantha Rh2AG619800 Rh2BG630700 Rh2CG600800 Rh2DG643600
rosa_wichuraiana Rw2G051340 Rw2G051350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 436
AccBSI CCGCTC 1 cut(s) 126
AccIII TCCGGA 1 cut(s) 269
AciI CCGC 3 cut(s) 124, 434, 446
AcoI YGGCCR 2 cut(s) 217, 402
AfaI GTAC 2 cut(s) 355, 550
AfiI CCNNNNNNNGG 4 cut(s) 32, 376, 400, 468
AflIII ACRYGT 1 cut(s) 105
AgeI ACCGGT 1 cut(s) 393
AgsI TTSAA 2 cut(s) 85, 376
AjiI CACGTC 1 cut(s) 106
AjnI CCWGG 1 cut(s) 461
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 543
Aor13HI TCCGGA 1 cut(s) 269
AoxI GGCC 3 cut(s) 217, 402, 459
ApeKI GCWGC 2 cut(s) 96, 482
ArsI GACNNNNNNTTYG 2 cut(s) 355, 387
AsiGI ACCGGT 1 cut(s) 393
Asp700I GAANNNNTTC 1 cut(s) 21
AspLEI GCGC 2 cut(s) 92, 451
AspS9I GGNCC 1 cut(s) 459
AsuII TTCGAA 1 cut(s) 344
BanI GGYRCC 1 cut(s) 436
BbsI GAAGAC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 83, 469
BccI CCATC 1 cut(s) 562
BcgI CGANNNNNNTGC 2 cut(s) 418, 452
BciT130I CCWGG 1 cut(s) 463
BcoDI GTCTC 1 cut(s) 543
BglI GCCNNNNNGGC 1 cut(s) 225
BglII AGATCT 1 cut(s) 210
BisI GCNGC 3 cut(s) 97, 447, 483
BlsI GCNGC 3 cut(s) 98, 448, 484
BmcAI AGTACT 2 cut(s) 355, 550
Bme1390I CCNGG 1 cut(s) 463
BmgBI CACGTC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 459
BmiI GGNNCC 3 cut(s) 438, 460, 532
BmrFI CCNGG 1 cut(s) 463
BmrI ACTGGG 1 cut(s) 540
BmuI ACTGGG 1 cut(s) 540
BpiI GAAGAC 1 cut(s) 43
BpmI CTGGAG 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 371
BsaWI WCCGGW 2 cut(s) 269, 393
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 376, 400, 468
Bse118I RCCGGY 3 cut(s) 92, 224, 393
Bse1I ACTGG 1 cut(s) 546
Bse3DI GCAATG 1 cut(s) 40
BseAI TCCGGA 1 cut(s) 269
BseBI CCWGG 1 cut(s) 463
BseLI CCNNNNNNNGG 4 cut(s) 32, 376, 400, 468
BseMI GCAATG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 546
BseRI GAGGAG 1 cut(s) 531
BseX3I CGGCCG 1 cut(s) 402
BseXI GCAGC 2 cut(s) 83, 469
Bsh1285I CGRYCG 1 cut(s) 405
BshFI GGCC 3 cut(s) 219, 404, 461
BshNI GGYRCC 1 cut(s) 436
BshTI ACCGGT 1 cut(s) 393
BsiEI CGRYCG 1 cut(s) 405
BsiSI CCGG 7 cut(s) 93, 169, 216, 225, 270, 394, 401
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 4 cut(s) 32, 376, 400, 468
BsmAI GTCTC 1 cut(s) 543
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 3 cut(s) 219, 404, 461
Bsp119I TTCGAA 1 cut(s) 344
Bsp13I TCCGGA 1 cut(s) 269
Bsp143I GATC 1 cut(s) 210
BspACI CCGC 3 cut(s) 124, 434, 446
BspANI GGCC 3 cut(s) 219, 404, 461
BspEI TCCGGA 1 cut(s) 269
BspLI GGNNCC 3 cut(s) 438, 460, 532
BspT104I TTCGAA 1 cut(s) 344
BspT107I GGYRCC 1 cut(s) 436
BsrBI CCGCTC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 40
BsrFI RCCGGY 3 cut(s) 92, 224, 393
BsrI ACTGG 1 cut(s) 546
BssAI RCCGGY 3 cut(s) 92, 224, 393
BssMI GATC 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 463
Bst6I CTCTTC 2 cut(s) 225, 512
BstAPI GCANNNNNTGC 1 cut(s) 366
BstBI TTCGAA 1 cut(s) 344
BstC8I GCNNGC 3 cut(s) 47, 94, 226
BstHHI GCGC 2 cut(s) 92, 451
BstKTI GATC 1 cut(s) 213
BstMAI GTCTC 1 cut(s) 543
BstMBI GATC 1 cut(s) 210
BstMCI CGRYCG 1 cut(s) 405
BstMWI GCNNNNNNNGC 6 cut(s) 96, 225, 234, 256, 366, 488
BstNI CCWGG 1 cut(s) 463
BstNSI RCATGY 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 461
BstV1I GCAGC 2 cut(s) 83, 469
BstV2I GAAGAC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
BstZI CGGCCG 1 cut(s) 402
BsuRI GGCC 3 cut(s) 219, 404, 461
BtrI CACGTC 1 cut(s) 106
Cac8I GCNNGC 3 cut(s) 47, 94, 226
CfoI GCGC 2 cut(s) 92, 451
Cfr10I RCCGGY 3 cut(s) 92, 224, 393
Cfr13I GGNCC 1 cut(s) 459
CseI GACGC 1 cut(s) 103
Csp6I GTAC 2 cut(s) 354, 549
CspAI ACCGGT 1 cut(s) 393
CviAII CATG 4 cut(s) 101, 306, 410, 452
CviJI RGCY 9 cut(s) 20, 96, 168, 219, 237, 301, 404, 461, 482
CviKI_1 RGCY 9 cut(s) 20, 96, 168, 219, 237, 301, 404, 461, 482
CviQI GTAC 2 cut(s) 354, 549
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
EaeI YGGCCR 2 cut(s) 217, 402
EagI CGGCCG 1 cut(s) 402
Eam1104I CTCTTC 2 cut(s) 225, 512
EarI CTCTTC 2 cut(s) 225, 512
EclXI CGGCCG 1 cut(s) 402
Eco52I CGGCCG 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 459
EcoRII CCWGG 1 cut(s) 461
FaeI CATG 4 cut(s) 104, 309, 413, 455
FaiI YATR 5 cut(s) 102, 206, 307, 411, 453
FaqI GGGAC 1 cut(s) 121
FatI CATG 4 cut(s) 100, 305, 409, 451
Fnu4HI GCNGC 3 cut(s) 97, 447, 483
Fsp4HI GCNGC 3 cut(s) 97, 447, 483
GlaI GCGC 2 cut(s) 91, 450
GluI GCNGC 3 cut(s) 97, 447, 483
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 3 cut(s) 219, 404, 461
HapII CCGG 7 cut(s) 93, 169, 216, 225, 270, 394, 401
HgaI GACGC 1 cut(s) 103
HhaI GCGC 2 cut(s) 92, 451
Hin1II CATG 4 cut(s) 104, 309, 413, 455
Hin6I GCGC 2 cut(s) 90, 449
HinP1I GCGC 2 cut(s) 90, 449
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 1 cut(s) 331
HpaII CCGG 7 cut(s) 93, 169, 216, 225, 270, 394, 401
Hpy188I TCNGA 2 cut(s) 157, 336
Hpy188III TCNNGA 3 cut(s) 6, 26, 270
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 4 cut(s) 235, 370, 415, 424
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 2 cut(s) 324, 360
HpyF10VI GCNNNNNNNGC 6 cut(s) 96, 225, 234, 256, 366, 488
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 4 cut(s) 104, 309, 413, 455
HspAI GCGC 2 cut(s) 90, 449
Kpn2I TCCGGA 1 cut(s) 269
KroI GCCGGC 2 cut(s) 92, 224
KroNI GCCGGC 2 cut(s) 94, 226
Kzo9I GATC 1 cut(s) 210
LmnI GCTCC 1 cut(s) 200
Lsp1109I GCAGC 2 cut(s) 83, 469
MaeII ACGT 1 cut(s) 105
MalI GATC 1 cut(s) 212
MbiI CCGCTC 1 cut(s) 126
MboI GATC 1 cut(s) 210
MboII GAAGA 5 cut(s) 48, 242, 304, 307, 529
MflI RGATCY 1 cut(s) 210
MluCI AATT 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 9 cut(s) 86, 211, 249, 312, 395, 449, 489, 519, 552
MreI CGCCGGCG 1 cut(s) 224
MroI TCCGGA 1 cut(s) 269
MroNI GCCGGC 2 cut(s) 92, 224
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 1 cut(s) 315
MspI CCGG 7 cut(s) 93, 169, 216, 225, 270, 394, 401
MspR9I CCNGG 1 cut(s) 463
MvaI CCWGG 1 cut(s) 463
MwoI GCNNNNNNNGC 6 cut(s) 96, 225, 234, 256, 366, 488
NaeI GCCGGC 2 cut(s) 94, 226
NdeII GATC 1 cut(s) 210
NgoMIV GCCGGC 2 cut(s) 92, 224
NlaIII CATG 4 cut(s) 104, 309, 413, 455
NlaIV GGNNCC 3 cut(s) 438, 460, 532
NspI RCATGY 1 cut(s) 309
NspV TTCGAA 1 cut(s) 344
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PdiI GCCGGC 2 cut(s) 94, 226
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 331
PinAI ACCGGT 1 cut(s) 393
PkrI GCNGC 3 cut(s) 98, 448, 484
Psp6I CCWGG 1 cut(s) 461
PspGI CCWGG 1 cut(s) 461
PspN4I GGNNCC 3 cut(s) 438, 460, 532
PspPI GGNCC 1 cut(s) 459
PsuI RGATCY 1 cut(s) 210
RsaI GTAC 2 cut(s) 355, 550
RsaNI GTAC 2 cut(s) 354, 549
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 3 cut(s) 97, 447, 483
Sau3AI GATC 1 cut(s) 210
Sau96I GGNCC 1 cut(s) 459
ScaI AGTACT 2 cut(s) 355, 550
ScrFI CCNGG 1 cut(s) 463
SetI ASST 7 cut(s) 22, 108, 203, 246, 323, 341, 381
SfuI TTCGAA 1 cut(s) 344
SgrAI CRCCGGYG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 1 cut(s) 180
SsiI CCGC 3 cut(s) 124, 434, 446
StyD4I CCNGG 1 cut(s) 461
TaiI ACGT 1 cut(s) 108
TaqI TCGA 4 cut(s) 69, 117, 344, 494
TasI AATT 1 cut(s) 180
TatI WGTACW 2 cut(s) 353, 548
TauI GCSGC 1 cut(s) 449
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TseI GCWGC 2 cut(s) 96, 482
TspDTI ATGAA 1 cut(s) 426
XceI RCATGY 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 21
ZrmI AGTACT 2 cut(s) 355, 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.