AT3G42960

short-chain dehydrogenase reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015203
Physical Location & Seq
Reverse (-)
15018695 .. 15019685
991 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G42960.1

Sequence Viewer

Length: 819 bp
ATGGCGAACTCAGACAAAAGATTATTCGAGAAGGTAGCTATAATAACCGGAGGAGCAAGAGGGATAGGAGCGGCCACGGCGAGATTGTTCACAGAGAATGGCGCGTATGTGATAGTCGCGGATATCCTTGAGAATGAAGGCATCCTTGTGGCGGAATCGATCGGTGGGTGTTACGTTCATTGTGACGTATCGAAGGAGGCTGATGTTGAGGCGGCAGTGGAGCTAGCAATGAGACGTAAAGGTAGACTAGATGTGATGTTCAACAATGCCGGGATGTCGCTTAACGAAGGTAGTATCATGGGGATGGACGTGGACATGGTTAACAAACTTGTCTCGGTTAATGTCAATGGTGTTTTGCATGGTATCAAACATGCCGCTAAGGCCATGATCAAAGGGGGACGAGGAGGCTCGATAATATGCACATCGAGCTCATCAGGGCTAATGGGAGGACTTGGAGGACATGCGTATACGCTCTCCAAAGGAGCCATCAACGGGGTGGTGAGGACAACGGCGTGCGAGCTTGGGTCTCACGGCATCCGTGTGAATAGCATCTCTCCTCATGGAGTTCCCACTGACATCTTGGTTAATGCGTACCGTAAGTTCCTTAACCATGACAAACTCAACGTCGCTGAGGTCACCGACATTATTGCTGAGAAAGGGAGTTTGCTGACCGGAAGAGCCGGTACTGTGGAGGACGTAGCTCAAGCAGCTTTGTTTCTTGCAAGCCAAGAATCGTCGGGGTTCATTACCGGACATAACTTGGTTGTTGATGGTGGTTACACATCTGCCACTAGTACTATGAGATTTATCTACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

272

Amino Acids

28.35

Weight (kDa)

6.44

Isoelectric Point (pI)

20.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 11 - 196 5.1e-45 short chain dehydrogenase
KR PF08659 14 - 170 2.1e-09 KR domain
adh_short_C2 PF13561 18 - 261 1.4e-55 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015203)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G42960
fragaria_vesca FvH4_4g35960
malus_domestica MD13G1013400.v1.1 MD16G1010300.v1.1
prunus_persica Prupe.1G340300_v2.0.a1
pyrus_communis pycom16g01010
rosa_laevigata RLG00000005727
rosa_multiflora Rmu_ssc0000107.1_g000001 Rmu_ssc0000253.1_g000009
rosa_roxburghii Rroxscaffold_5G00386070
rosa_rugosa Rorug04G0362800
rosa_samantha Rh4AG424200 Rh4BG436300 Rh4CG450900 Rh4DG432800
rosa_wichuraiana Rw4G036370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 71
AccI GTMKAC 2 cut(s) 244, 467
AccII CGCG 2 cut(s) 104, 119
AciI CCGC 5 cut(s) 71, 119, 152, 212, 375
AcoI YGGCCR 1 cut(s) 72
AfaI GTAC 3 cut(s) 593, 685, 796
AfiI CCNNNNNNNGG 2 cut(s) 151, 492
AgsI TTSAA 1 cut(s) 262
AhlI ACTAGT 1 cut(s) 791
AjiI CACGTC 1 cut(s) 310
AluBI AGCT 6 cut(s) 38, 223, 429, 520, 701, 710
AluI AGCT 6 cut(s) 38, 223, 429, 520, 701, 710
Alw21I GWGCWC 1 cut(s) 431
Alw26I GTCTC 3 cut(s) 226, 337, 531
AoxI GGCC 2 cut(s) 72, 381
ApeKI GCWGC 1 cut(s) 707
ArsI GACNNNNNNTTYG 2 cut(s) 609, 641
AspLEI GCGC 1 cut(s) 104
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 2 cut(s) 511, 628
AsuNHI GCTAGC 1 cut(s) 223
BanII GRGCYC 1 cut(s) 431
BarI GAAGNNNNNNTAC 2 cut(s) 667, 699
Bbv12I GWGCWC 1 cut(s) 431
BbvCI CCTCAGC 1 cut(s) 630
BbvI GCAGC 1 cut(s) 719
BccI CCATC 3 cut(s) 298, 494, 764
BceAI ACGGC 3 cut(s) 93, 525, 547
BcgI CGANNNNNNTGC 2 cut(s) 629, 663
BclI TGATCA 1 cut(s) 387
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 3 cut(s) 226, 337, 531
BcuI ACTAGT 1 cut(s) 791
BfaI CTAG 4 cut(s) 224, 248, 792, 817
BglI GCCNNNNNGGC 1 cut(s) 380
BisI GCNGC 4 cut(s) 72, 213, 375, 708
BlsI GCNGC 4 cut(s) 73, 214, 376, 709
BmcAI AGTACT 1 cut(s) 796
Bme1390I CCNGG 1 cut(s) 271
BmgBI CACGTC 1 cut(s) 310
BmiI GGNNCC 1 cut(s) 484
BmrFI CCNGG 1 cut(s) 271
BmsI GCATC 3 cut(s) 150, 543, 558
BmtI GCTAGC 1 cut(s) 227
Bpu10I CCTNAGC 2 cut(s) 378, 630
BpuEI CTTGAG 2 cut(s) 149, 687
BpuMI CCSGG 1 cut(s) 271
Bsa29I ATCGAT 1 cut(s) 158
BsaI GGTCTC 1 cut(s) 531
BsaJI CCNNGG 1 cut(s) 75
BsaWI WCCGGW 3 cut(s) 47, 671, 749
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 492
Bse118I RCCGGY 1 cut(s) 680
Bse3DI GCAATG 1 cut(s) 234
BseCI ATCGAT 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 4 cut(s) 141, 279, 309, 534
BseLI CCNNNNNNNGG 2 cut(s) 151, 492
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 3 cut(s) 24, 621, 642
BseRI GAGGAG 3 cut(s) 66, 417, 546
BseXI GCAGC 1 cut(s) 719
Bsh1236I CGCG 2 cut(s) 104, 119
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 2 cut(s) 74, 383
BshVI ATCGAT 1 cut(s) 158
BsiEI CGRYCG 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 431
BsiSI CCGG 5 cut(s) 48, 270, 672, 681, 750
BslFI GGGAC 1 cut(s) 411
BslI CCNNNNNNNGG 2 cut(s) 151, 492
BsmAI GTCTC 3 cut(s) 226, 337, 531
BsmBI CGTCTC 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 411
BsnI GGCC 2 cut(s) 74, 383
Bso31I GGTCTC 1 cut(s) 531
Bsp1286I GDGCHC 1 cut(s) 431
Bsp143I GATC 2 cut(s) 159, 387
BspACI CCGC 5 cut(s) 71, 119, 152, 212, 375
BspANI GGCC 2 cut(s) 74, 383
BspCNI CTCAG 3 cut(s) 23, 622, 643
BspDI ATCGAT 1 cut(s) 158
BspFNI CGCG 2 cut(s) 104, 119
BspLI GGNNCC 1 cut(s) 484
BspOI GCTAGC 1 cut(s) 227
BspQI GCTCTTC 1 cut(s) 670
BspTNI GGTCTC 1 cut(s) 531
BsrBI CCGCTC 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 680
BssAI RCCGGY 1 cut(s) 680
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 2 cut(s) 159, 387
BssNAI GTATAC 1 cut(s) 468
Bst1107I GTATAC 1 cut(s) 468
Bst4CI ACNGT 2 cut(s) 596, 688
Bst6I CTCTTC 1 cut(s) 670
BstC8I GCNNGC 4 cut(s) 225, 514, 518, 724
BstDEI CTNAG 4 cut(s) 10, 378, 630, 651
BstDSI CCRYGG 1 cut(s) 75
BstEII GGTNACC 1 cut(s) 634
BstF5I GGATG 4 cut(s) 141, 279, 309, 534
BstFNI CGCG 2 cut(s) 104, 119
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 2 cut(s) 162, 390
BstMAI GTCTC 3 cut(s) 226, 337, 531
BstMBI GATC 2 cut(s) 159, 387
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 4 cut(s) 77, 380, 426, 707
BstNSI RCATGY 2 cut(s) 374, 464
BstPI GGTNACC 1 cut(s) 634
BstSCI CCNGG 1 cut(s) 269
BstUI CGCG 2 cut(s) 104, 119
BstV1I GCAGC 1 cut(s) 719
BstZ17I GTATAC 1 cut(s) 468
Bsu15I ATCGAT 1 cut(s) 158
BsuRI GGCC 2 cut(s) 74, 383
BsuTUI ATCGAT 1 cut(s) 158
BtgI CCRYGG 1 cut(s) 75
BtrI CACGTC 1 cut(s) 310
BtsCI GGATG 4 cut(s) 141, 279, 309, 534
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 2 cut(s) 222, 570
Cac8I GCNNGC 4 cut(s) 225, 514, 518, 724
CfoI GCGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 680
ClaI ATCGAT 1 cut(s) 158
Csp6I GTAC 3 cut(s) 592, 684, 795
CviAII CATG 8 cut(s) 298, 316, 359, 371, 385, 461, 560, 611
CviQI GTAC 3 cut(s) 592, 684, 795
DdeI CTNAG 4 cut(s) 10, 378, 630, 651
DpnI GATC 2 cut(s) 161, 389
DpnII GATC 2 cut(s) 159, 387
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 670
EarI CTCTTC 1 cut(s) 670
EciI GGCGGA 1 cut(s) 167
Ecl136II GAGCTC 1 cut(s) 429
Eco24I GRGCYC 1 cut(s) 431
Eco31I GGTCTC 1 cut(s) 531
Eco32I GATATC 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 429
Eco91I GGTNACC 1 cut(s) 634
EcoICRI GAGCTC 1 cut(s) 429
EcoO65I GGTNACC 1 cut(s) 634
EcoRV GATATC 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 431
Esp3I CGTCTC 1 cut(s) 226
FaeI CATG 8 cut(s) 301, 319, 362, 374, 388, 464, 563, 614
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 1 cut(s) 411
FatI CATG 8 cut(s) 297, 315, 358, 370, 384, 460, 559, 610
FbaI TGATCA 1 cut(s) 387
FblI GTMKAC 2 cut(s) 244, 467
Fnu4HI GCNGC 4 cut(s) 72, 213, 375, 708
FokI GGATG 4 cut(s) 128, 286, 316, 521
FriOI GRGCYC 1 cut(s) 431
Fsp4HI GCNGC 4 cut(s) 72, 213, 375, 708
FspBI CTAG 4 cut(s) 224, 248, 792, 817
GlaI GCGC 1 cut(s) 103
GluI GCNGC 4 cut(s) 72, 213, 375, 708
HaeIII GGCC 2 cut(s) 74, 383
HapII CCGG 5 cut(s) 48, 270, 672, 681, 750
HhaI GCGC 1 cut(s) 104
Hin1II CATG 8 cut(s) 301, 319, 362, 374, 388, 464, 563, 614
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 2 cut(s) 155, 731
HpaI GTTAAC 1 cut(s) 322
HpaII CCGG 5 cut(s) 48, 270, 672, 681, 750
HphI GGTGA 2 cut(s) 511, 628
Hpy166II GTNNAC 5 cut(s) 90, 245, 313, 322, 468
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 1 cut(s) 28
Hpy8I GTNNAC 5 cut(s) 90, 245, 313, 322, 468
Hpy99I CGWCG 2 cut(s) 629, 739
HpyAV CCTTC 4 cut(s) 25, 131, 187, 281
HpyCH4III ACNGT 2 cut(s) 596, 688
HpyCH4IV ACGT 6 cut(s) 174, 186, 235, 309, 624, 696
HpyCH4V TGCA 3 cut(s) 358, 420, 722
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 380, 426, 707
HpyF3I CTNAG 4 cut(s) 10, 378, 630, 651
HpySE526I ACGT 6 cut(s) 174, 186, 235, 309, 624, 696
Hsp92II CATG 8 cut(s) 301, 319, 362, 374, 388, 464, 563, 614
HspAI GCGC 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 387
KspAI GTTAAC 1 cut(s) 322
Kzo9I GATC 2 cut(s) 159, 387
LguI GCTCTTC 1 cut(s) 670
LmnI GCTCC 4 cut(s) 53, 68, 220, 482
LpnPI CCDG 6 cut(s) 61, 283, 420, 685, 694, 763
Lsp1109I GCAGC 1 cut(s) 719
LweI GCATC 3 cut(s) 150, 543, 558
MaeI CTAG 4 cut(s) 224, 248, 792, 817
MaeII ACGT 6 cut(s) 174, 186, 235, 309, 624, 696
MaeIII GTNAC 4 cut(s) 170, 182, 634, 776
MalI GATC 2 cut(s) 161, 389
MbiI CCGCTC 1 cut(s) 71
MboI GATC 2 cut(s) 159, 387
MboII GAAGA 1 cut(s) 687
MhlI GDGCHC 1 cut(s) 431
MseI TTAA 5 cut(s) 282, 321, 339, 585, 606
MslI CAYNNNNRTG 3 cut(s) 146, 302, 539
MspI CCGG 5 cut(s) 48, 270, 672, 681, 750
MspR9I CCNGG 1 cut(s) 271
MvnI CGCG 2 cut(s) 104, 119
MwoI GCNNNNNNNGC 4 cut(s) 77, 380, 426, 707
NciI CCSGG 1 cut(s) 271
NdeII GATC 2 cut(s) 159, 387
NheI GCTAGC 1 cut(s) 223
NlaIII CATG 8 cut(s) 301, 319, 362, 374, 388, 464, 563, 614
NlaIV GGNNCC 1 cut(s) 484
NmuCI GTSAC 2 cut(s) 182, 634
NspI RCATGY 2 cut(s) 374, 464
PciSI GCTCTTC 1 cut(s) 670
PfeI GAWTC 2 cut(s) 155, 731
PkrI GCNGC 4 cut(s) 73, 214, 376, 709
Ple19I CGATCG 1 cut(s) 162
Psp124BI GAGCTC 1 cut(s) 431
PspEI GGTNACC 1 cut(s) 634
PspN4I GGNNCC 1 cut(s) 484
PsrI GAACNNNNNNTAC 2 cut(s) 584, 616
PvuI CGATCG 1 cut(s) 162
RsaI GTAC 3 cut(s) 593, 685, 796
RsaNI GTAC 3 cut(s) 592, 684, 795
RseI CAYNNNNRTG 3 cut(s) 146, 302, 539
SacI GAGCTC 1 cut(s) 431
SapI GCTCTTC 1 cut(s) 670
SaqAI TTAA 5 cut(s) 282, 321, 339, 585, 606
SatI GCNGC 4 cut(s) 72, 213, 375, 708
Sau3AI GATC 2 cut(s) 159, 387
ScaI AGTACT 1 cut(s) 796
ScrFI CCNGG 1 cut(s) 271
SduI GDGCHC 1 cut(s) 431
SfaNI GCATC 3 cut(s) 150, 543, 558
SmiMI CAYNNNNRTG 3 cut(s) 146, 302, 539
SmlI CTYRAG 2 cut(s) 128, 702
SmoI CTYRAG 2 cut(s) 128, 702
SpeI ACTAGT 1 cut(s) 791
SsiI CCGC 5 cut(s) 71, 119, 152, 212, 375
SspMI CTAG 4 cut(s) 224, 248, 792, 817
SstI GAGCTC 1 cut(s) 431
StyD4I CCNGG 1 cut(s) 269
TaaI ACNGT 2 cut(s) 596, 688
TaiI ACGT 6 cut(s) 177, 189, 238, 312, 627, 699
TaqI TCGA 5 cut(s) 27, 158, 191, 410, 425
TatI WGTACW 1 cut(s) 794
TauI GCSGC 3 cut(s) 74, 215, 377
TfiI GAWTC 2 cut(s) 155, 731
Tru1I TTAA 5 cut(s) 282, 321, 339, 585, 606
Tru9I TTAA 5 cut(s) 282, 321, 339, 585, 606
TscAI CASTG 2 cut(s) 222, 577
TseFI GTSAC 2 cut(s) 182, 634
TseI GCWGC 1 cut(s) 707
Tsp45I GTSAC 2 cut(s) 182, 634
TspDTI ATGAA 3 cut(s) 150, 167, 733
TspGWI ACGGA 1 cut(s) 527
TspRI CASTG 2 cut(s) 222, 577
XceI RCATGY 2 cut(s) 374, 464
XcmI CCANNNNNNNNNTGG 2 cut(s) 493, 577
XmiI GTMKAC 2 cut(s) 244, 467
XspI CTAG 4 cut(s) 224, 248, 792, 817
ZrmI AGTACT 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.