Rmu_ssc0000253.1_g000009

Short-chain dehydrogenase reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000253.1
OG0015203
Physical Location & Seq
Reverse (-)
32898 .. 33728
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000253.1_g000009.1.cds

Sequence Viewer

Length: 831 bp
atggttttaaattgtgctaggttggtgaacaaagtcgcagttataactgggggtgcaagagggattggagctgctgcggccaagctatttgcccgaaacggcgcccatgttgtgattgccgacatacttgacgatttgggagctgcactggctgactctattgggggacagtacatacactgtgatgtgtccaaggaatctgatgttgaatcagctattgagcttgcactcggaaggacaggccagcttgacatcatgttcaacaatgctggtatttctggcccgtccgggagtataaccagccttgacatgggaaaggtgcagcaactgctctcagtaaacactttcggctgtttacatgggattaagtatgcagcagcagctatgatcaaaaccagaacaggcgggagcatcatctgcacatcgagcactgcagctatcatgggaggccttggtggacatgcctacacattgtcaaaggaatccatcaatggactggtgagaagtgccgcatgtgagttgggagtccatggcattcgagtgaacagtatttctccacacggggttccttcagagatgctggtcgctgcctacagagagattcttgggaaagaggatatgcaggccgaagatgtaagcaagattgtggcagacagggcgagcttgttgcgtggcagatgtggaaccatggaagatgtcgcagaagctgcattattccttgccagtgaagactcagggttcataacagcccataatcttgtccttgatgggggttatacttctgctgtcagtaccatgagcttcatttatcaatttaccaatagacaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

276

Amino Acids

28.58

Weight (kDa)

5.78

Isoelectric Point (pI)

27.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015203)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G42960
fragaria_vesca FvH4_4g35960
malus_domestica MD13G1013400.v1.1 MD16G1010300.v1.1
prunus_persica Prupe.1G340300_v2.0.a1
pyrus_communis pycom16g01010
rosa_laevigata RLG00000005727
rosa_multiflora Rmu_ssc0000107.1_g000001 Rmu_ssc0000253.1_g000009
rosa_roxburghii Rroxscaffold_5G00386070
rosa_rugosa Rorug04G0362800
rosa_samantha Rh4AG424200 Rh4BG436300 Rh4CG450900 Rh4DG432800
rosa_wichuraiana Rw4G036370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 44
AccB1I GGYRCC 1 cut(s) 101
AciI CCGC 3 cut(s) 77, 405, 510
AcoI YGGCCR 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 555
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 2 cut(s) 173, 793
AfiI CCNNNNNNNGG 2 cut(s) 310, 769
AgsI TTSAA 2 cut(s) 209, 262
Alw21I GWGCWC 1 cut(s) 431
AlwNI CAGNNNCTG 2 cut(s) 328, 707
AoxI GGCC 5 cut(s) 78, 241, 280, 448, 624
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 281
AsuC2I CCSGG 1 cut(s) 289
AsuHPI GGTGA 2 cut(s) 37, 511
BanI GGYRCC 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 735
Bbv12I GWGCWC 1 cut(s) 431
BccI CCATC 2 cut(s) 494, 761
BceAI ACGGC 1 cut(s) 115
BcgI CGANNNNNNTGC 2 cut(s) 649, 683
BclI TGATCA 1 cut(s) 387
BcnI CCSGG 1 cut(s) 289
BfaI CTAG 1 cut(s) 18
BfmI CTRYAG 2 cut(s) 432, 592
BfoI RGCGCY 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 3 cut(s) 103, 567, 685
BmrFI CCNGG 1 cut(s) 289
BmrI ACTGGG 1 cut(s) 57
BmsI GCATC 2 cut(s) 420, 567
BmuI ACTGGG 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 735
BpuMI CCSGG 1 cut(s) 289
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 4 cut(s) 192, 451, 529, 687
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 769
Bse1I ACTGG 4 cut(s) 52, 153, 501, 723
BseDI CCNNGG 4 cut(s) 192, 451, 529, 687
BseLI CCNNNNNNNGG 2 cut(s) 310, 769
BseMII CTCAG 2 cut(s) 348, 747
BseNI ACTGG 4 cut(s) 52, 153, 501, 723
BsgI GTGCAG 3 cut(s) 129, 341, 403
BshFI GGCC 5 cut(s) 80, 243, 282, 450, 626
BshNI GGYRCC 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 431
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 1 cut(s) 180
BslI CCNNNNNNNGG 2 cut(s) 310, 769
BsmFI GGGAC 1 cut(s) 180
BsmI GAATGC 1 cut(s) 534
BsnI GGCC 5 cut(s) 80, 243, 282, 450, 626
Bsp1286I GDGCHC 1 cut(s) 431
Bsp143I GATC 1 cut(s) 387
Bsp19I CCATGG 2 cut(s) 529, 687
BspACI CCGC 3 cut(s) 77, 405, 510
BspANI GGCC 5 cut(s) 80, 243, 282, 450, 626
BspCNI CTCAG 2 cut(s) 347, 746
BspLI GGNNCC 3 cut(s) 103, 567, 685
BspMAI CTGCAG 1 cut(s) 436
BspT107I GGYRCC 1 cut(s) 101
BsrI ACTGG 4 cut(s) 52, 153, 501, 723
BssECI CCNNGG 4 cut(s) 192, 451, 529, 687
BssMI GATC 1 cut(s) 387
BssNI GRCGYC 1 cut(s) 102
BssT1I CCWWGG 4 cut(s) 192, 451, 529, 687
Bst4CI ACNGT 3 cut(s) 171, 182, 548
BstACI GRCGYC 1 cut(s) 102
BstAPI GCANNNNNTGC 3 cut(s) 328, 417, 707
BstC8I GCNNGC 4 cut(s) 225, 245, 624, 661
BstDEI CTNAG 2 cut(s) 334, 733
BstDSI CCRYGG 2 cut(s) 529, 687
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 1 cut(s) 390
BstMBI GATC 1 cut(s) 387
BstMWI GCNNNNNNNGC 8 cut(s) 77, 149, 328, 380, 417, 426, 656, 707
BstNSI RCATGY 2 cut(s) 464, 516
BstSCI CCNGG 1 cut(s) 287
BstSFI CTRYAG 2 cut(s) 432, 592
BstV2I GAAGAC 1 cut(s) 735
BsuRI GGCC 5 cut(s) 80, 243, 282, 450, 626
BtgI CCRYGG 2 cut(s) 529, 687
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 4 cut(s) 146, 178, 429, 730
Cac8I GCNNGC 4 cut(s) 225, 245, 624, 661
CaiI CAGNNNCTG 2 cut(s) 328, 707
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 281
Csp6I GTAC 2 cut(s) 172, 792
CviQI GTAC 2 cut(s) 172, 792
DdeI CTNAG 2 cut(s) 334, 733
DinI GGCGCC 1 cut(s) 103
DpnI GATC 1 cut(s) 389
DpnII GATC 1 cut(s) 387
DraI TTTAAA 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 78
Eco130I CCWWGG 4 cut(s) 192, 451, 529, 687
Eco147I AGGCCT 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 555
EcoT14I CCWWGG 4 cut(s) 192, 451, 529, 687
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
ErhI CCWWGG 4 cut(s) 192, 451, 529, 687
FaqI GGGAC 1 cut(s) 180
FauI CCCGC 1 cut(s) 398
FbaI TGATCA 1 cut(s) 387
FspBI CTAG 1 cut(s) 18
GlaI GCGC 1 cut(s) 103
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 5 cut(s) 80, 243, 282, 450, 626
HapII CCGG 1 cut(s) 288
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 102
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 7 cut(s) 155, 197, 209, 482, 525, 601, 731
HpaII CCGG 1 cut(s) 288
HphI GGTGA 2 cut(s) 37, 511
Hpy166II GTNNAC 5 cut(s) 28, 340, 356, 458, 544
Hpy188I TCNGA 3 cut(s) 202, 233, 574
Hpy8I GTNNAC 5 cut(s) 28, 340, 356, 458, 544
HpyAV CCTTC 2 cut(s) 228, 579
HpyCH4III ACNGT 3 cut(s) 171, 182, 548
HpyCH4V TGCA 9 cut(s) 56, 146, 227, 322, 374, 420, 434, 622, 710
HpyF10VI GCNNNNNNNGC 8 cut(s) 77, 149, 328, 380, 417, 426, 656, 707
HpyF3I CTNAG 2 cut(s) 334, 733
Hsp92I GRCGYC 1 cut(s) 102
HspAI GCGC 1 cut(s) 102
KasI GGCGCC 1 cut(s) 101
Ksp22I TGATCA 1 cut(s) 387
Kzo9I GATC 1 cut(s) 387
LmnI GCTCC 3 cut(s) 68, 140, 408
LweI GCATC 2 cut(s) 420, 567
MaeI CTAG 1 cut(s) 18
MalI GATC 1 cut(s) 389
MboI GATC 1 cut(s) 387
MboII GAAGA 3 cut(s) 641, 704, 740
MhlI GDGCHC 1 cut(s) 431
MluCI AATT 2 cut(s) 10, 812
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 3 cut(s) 149, 534, 725
MnlI CCTC 3 cut(s) 53, 440, 607
MseI TTAA 2 cut(s) 8, 366
MslI CAYNNNNRTG 2 cut(s) 183, 539
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 289
Mva1269I GAATGC 1 cut(s) 534
MwoI GCNNNNNNNGC 8 cut(s) 77, 149, 328, 380, 417, 426, 656, 707
NarI GGCGCC 1 cut(s) 102
NciI CCSGG 1 cut(s) 289
NcoI CCATGG 2 cut(s) 529, 687
NdeII GATC 1 cut(s) 387
NlaIV GGNNCC 3 cut(s) 103, 567, 685
NspI RCATGY 2 cut(s) 464, 516
PceI AGGCCT 1 cut(s) 450
PctI GAATGC 1 cut(s) 534
PfeI GAWTC 4 cut(s) 197, 209, 482, 601
PfoI TCCNGGA 1 cut(s) 287
PleI GAGTC 3 cut(s) 149, 533, 725
PluTI GGCGCC 1 cut(s) 105
PpsI GAGTC 3 cut(s) 149, 533, 725
PsiI TTATAA 1 cut(s) 44
PspN4I GGNNCC 3 cut(s) 103, 567, 685
PspPI GGNCC 1 cut(s) 281
PstI CTGCAG 1 cut(s) 436
PstNI CAGNNNCTG 2 cut(s) 328, 707
RsaI GTAC 2 cut(s) 173, 793
RsaNI GTAC 2 cut(s) 172, 792
RseI CAYNNNNRTG 2 cut(s) 183, 539
SaqAI TTAA 2 cut(s) 8, 366
Sau3AI GATC 1 cut(s) 387
Sau96I GGNCC 1 cut(s) 281
SchI GAGTC 3 cut(s) 149, 534, 725
ScrFI CCNGG 1 cut(s) 289
SduI GDGCHC 1 cut(s) 431
SfaNI GCATC 2 cut(s) 420, 567
SfcI CTRYAG 2 cut(s) 432, 592
SfoI GGCGCC 1 cut(s) 103
SmiMI CAYNNNNRTG 2 cut(s) 183, 539
Sse9I AATT 2 cut(s) 10, 812
SseBI AGGCCT 1 cut(s) 450
SsiI CCGC 3 cut(s) 77, 405, 510
SspDI GGCGCC 1 cut(s) 101
SspMI CTAG 1 cut(s) 18
StuI AGGCCT 1 cut(s) 450
StyD4I CCNGG 1 cut(s) 287
StyI CCWWGG 4 cut(s) 192, 451, 529, 687
TaaI ACNGT 3 cut(s) 171, 182, 548
TaqI TCGA 2 cut(s) 425, 538
TasI AATT 2 cut(s) 10, 812
TatI WGTACW 1 cut(s) 171
TauI GCSGC 2 cut(s) 80, 512
TfiI GAWTC 4 cut(s) 197, 209, 482, 601
Tru1I TTAA 2 cut(s) 8, 366
Tru9I TTAA 2 cut(s) 8, 366
TscAI CASTG 4 cut(s) 153, 185, 436, 730
TspDTI ATGAA 2 cut(s) 730, 793
TspRI CASTG 4 cut(s) 153, 185, 436, 730
XceI RCATGY 2 cut(s) 464, 516
XcmI CCANNNNNNNNNTGG 2 cut(s) 307, 493
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.