Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015203

Physical Location & Seq

Genomic Coordinates Forward (+)

1237857 .. 1238840

Gene Structure 984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005727

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGAGCCAAAAATTCTACTGCGTGAACTGGATGAAGAAGCACGCATACTGCCTTCGAAGAAGTTGGTGAACAAAGTCGCAGTTATAACTGGGGGTGCAAGAGGGATTGGAGCTGCCGCGGCCAAGCTATTTGCCCAAAACGGCGCCCATGTTGTAATTGCCGACATACTTGACGATTTGGGAGCTGCACTGGCTGACTCTATTGGGGGACGGTACATACACTGTGATGTGTCCAAGGAAGCTGATGTTGAATCAGCTATTGAGCTTGCACTCAGATGGACAGGCCAGCTTGACATCATGTTCAACAATGCTGGTATTTCTGGTCCGTCGGGGAGTATAACCAGCCTTGACATGGGAAAGGTGCAGCAACTGCTCTCAGTAAACACTTTCGGCTGTTTACATGGGATTAAGTATGCAGCAGCAGCTATGATCAAAACCAGAACAGGCGGGAGCATCATCTGCACATCGAGCACTGCAGCGACCATGGGAGGCCTTGGAGGACATGCCTACACATTGTCAAAGGAGTCCATCAATGGACTGGTGAGAAGCGCTGCATGTGAGCTGGGAGTCCATGGCATTCGTGTGAACAGTATTTCACCACATGGGGTTCCTTCAGAGATGCTGGTCGCTGCCTACAGAGAGATTCTTGGGAAAGAGGATATGCAGGCCGAAGATGTAAGCAAGATTGTGGGAGAAAGGGCGAGTTTGTTGCGTGGCAGATGTGGAACTGTGGAAGATGTCGCAGAAGCTGCATTATTCCTTGCCAGTGAAGACTCAGGGTTCATAACAGCCCATAATCTTGTCCTTGATGGGGGTTATACTTCTGCTGTCAGTTCCATGAGCTTCATTTATCAATTTACCAATAGACAATGGTCACACATACCATGTAGTGAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

300

Amino Acids

31.38

Weight (kDa)

5.63

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	25 - 209	2e-43	short chain dehydrogenase
KR	PF08659	28 - 184	2.7e-06	KR domain
adh_short_C2	PF13561	32 - 274	8.3e-56	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42960
fragaria_vesca	FvH4_4g35960
malus_domestica	MD13G1013400.v1.1 MD16G1010300.v1.1
prunus_persica	Prupe.1G340300_v2.0.a1
pyrus_communis	pycom16g01010
rosa_laevigata	RLG00000005727
rosa_multiflora	Rmu_ssc0000107.1_g000001 Rmu_ssc0000253.1_g000009
rosa_roxburghii	Rroxscaffold_5G00386070
rosa_rugosa	Rorug04G0362800
rosa_samantha	Rh4AG424200 Rh4BG436300 Rh4CG450900 Rh4DG432800
rosa_wichuraiana	Rw4G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	143
AccII	CGCG	1 cut(s)	119
AciI	CCGC	3 cut(s)	117, 119, 447
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	597
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	1 cut(s)	215
AfeI	AGCGCT	1 cut(s)	550
AfiI	CCNNNNNNNGG	2 cut(s)	352, 811
AgsI	TTSAA	2 cut(s)	251, 304
Alw21I	GWGCWC	1 cut(s)	473
AlwNI	CAGNNNCTG	2 cut(s)	370, 749
Aor51HI	AGCGCT	1 cut(s)	550
AoxI	GGCC	4 cut(s)	120, 283, 490, 666
ApoI	RAATTY	1 cut(s)	12
AspLEI	GCGC	2 cut(s)	146, 551
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	3 cut(s)	79, 553, 588
AsuII	TTCGAA	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	143
BarI	GAAGNNNNNNTAC	2 cut(s)	30, 62
BbsI	GAAGAC	1 cut(s)	777
Bbv12I	GWGCWC	1 cut(s)	473
BccI	CCATC	3 cut(s)	270, 536, 803
BceAI	ACGGC	1 cut(s)	157
BcgI	CGANNNNNNTGC	2 cut(s)	691, 725
BclI	TGATCA	1 cut(s)	429
BfmI	CTRYAG	2 cut(s)	474, 634
BfoI	RGCGCY	2 cut(s)	147, 552
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	3 cut(s)	6, 145, 609
BmrI	ACTGGG	1 cut(s)	99
BmsI	GCATC	2 cut(s)	462, 609
BmuI	ACTGGG	1 cut(s)	99
BoxI	GACNNNNGTC	1 cut(s)	871
BpiI	GAAGAC	1 cut(s)	777
Bpu14I	TTCGAA	1 cut(s)	56
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	5 cut(s)	117, 234, 483, 493, 571
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 811
Bse1I	ACTGG	5 cut(s)	33, 94, 195, 543, 765
BseDI	CCNNGG	5 cut(s)	117, 234, 483, 493, 571
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	2 cut(s)	352, 811
BseMII	CTCAG	3 cut(s)	286, 390, 789
BseNI	ACTGG	5 cut(s)	33, 94, 195, 543, 765
BseYI	CCCAGC	1 cut(s)	562
BsgI	GTGCAG	3 cut(s)	171, 383, 445
Bsh1236I	CGCG	1 cut(s)	119
BshFI	GGCC	4 cut(s)	122, 285, 492, 668
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	473
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	2 cut(s)	352, 811
BsmFI	GGGAC	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	576
BsnI	GGCC	4 cut(s)	122, 285, 492, 668
Bsp119I	TTCGAA	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	473
Bsp143I	GATC	1 cut(s)	429
Bsp19I	CCATGG	2 cut(s)	483, 571
BspACI	CCGC	3 cut(s)	117, 119, 447
BspANI	GGCC	4 cut(s)	122, 285, 492, 668
BspCNI	CTCAG	3 cut(s)	285, 389, 788
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	3 cut(s)	6, 145, 609
BspMAI	CTGCAG	1 cut(s)	478
BspT104I	TTCGAA	1 cut(s)	56
BspT107I	GGYRCC	1 cut(s)	143
BsrI	ACTGG	5 cut(s)	33, 94, 195, 543, 765
BssECI	CCNNGG	5 cut(s)	117, 234, 483, 493, 571
BssMI	GATC	1 cut(s)	429
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	4 cut(s)	234, 483, 493, 571
Bst4CI	ACNGT	4 cut(s)	213, 224, 590, 730
BstACI	GRCGYC	1 cut(s)	144
BstAPI	GCANNNNNTGC	3 cut(s)	370, 459, 749
BstBI	TTCGAA	1 cut(s)	56
BstC8I	GCNNGC	4 cut(s)	43, 267, 287, 666
BstDEI	CTNAG	3 cut(s)	272, 376, 775
BstDSI	CCRYGG	3 cut(s)	117, 483, 571
BstF5I	GGATG	1 cut(s)	37
BstFNI	CGCG	1 cut(s)	119
BstH2I	RGCGCY	2 cut(s)	147, 552
BstHHI	GCGC	2 cut(s)	146, 551
BstKTI	GATC	1 cut(s)	432
BstMBI	GATC	1 cut(s)	429
BstMWI	GCNNNNNNNGC	7 cut(s)	119, 191, 370, 422, 459, 468, 749
BstNSI	RCATGY	2 cut(s)	506, 558
BstPAI	GACNNNNGTC	1 cut(s)	871
BstSFI	CTRYAG	2 cut(s)	474, 634
BstUI	CGCG	1 cut(s)	119
BstV2I	GAAGAC	1 cut(s)	777
BsuRI	GGCC	4 cut(s)	122, 285, 492, 668
BtgI	CCRYGG	3 cut(s)	117, 483, 571
BtsCI	GGATG	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	4 cut(s)	188, 220, 471, 772
Cac8I	GCNNGC	4 cut(s)	43, 267, 287, 666
CaiI	CAGNNNCTG	2 cut(s)	370, 749
CfoI	GCGC	2 cut(s)	146, 551
Cfr13I	GGNCC	1 cut(s)	323
Cfr42I	CCGCGG	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	214
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	3 cut(s)	272, 376, 775
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	1 cut(s)	431
DpnII	GATC	1 cut(s)	429
EaeI	YGGCCR	1 cut(s)	120
Eco130I	CCWWGG	4 cut(s)	234, 483, 493, 571
Eco147I	AGGCCT	1 cut(s)	492
Eco47I	GGWCC	1 cut(s)	323
Eco47III	AGCGCT	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	597
EcoT14I	CCWWGG	4 cut(s)	234, 483, 493, 571
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
ErhI	CCWWGG	4 cut(s)	234, 483, 493, 571
FaqI	GGGAC	1 cut(s)	222
FauI	CCCGC	1 cut(s)	440
FbaI	TGATCA	1 cut(s)	429
FokI	GGATG	1 cut(s)	44
GlaI	GCGC	2 cut(s)	145, 550
GsaI	CCCAGC	1 cut(s)	566
HaeII	RGCGCY	2 cut(s)	147, 552
HaeIII	GGCC	4 cut(s)	122, 285, 492, 668
HhaI	GCGC	2 cut(s)	146, 551
Hin1I	GRCGYC	1 cut(s)	144
Hin6I	GCGC	2 cut(s)	144, 549
HinP1I	GCGC	2 cut(s)	144, 549
HinfI	GANTC	6 cut(s)	197, 251, 524, 567, 643, 773
HphI	GGTGA	3 cut(s)	79, 553, 588
Hpy166II	GTNNAC	5 cut(s)	26, 70, 382, 398, 586
Hpy188I	TCNGA	2 cut(s)	275, 616
Hpy8I	GTNNAC	5 cut(s)	26, 70, 382, 398, 586
Hpy99I	CGWCG	1 cut(s)	331
HpyAV	CCTTC	2 cut(s)	63, 621
HpyCH4III	ACNGT	4 cut(s)	213, 224, 590, 730
HpyF10VI	GCNNNNNNNGC	7 cut(s)	119, 191, 370, 422, 459, 468, 749
HpyF3I	CTNAG	3 cut(s)	272, 376, 775
Hsp92I	GRCGYC	1 cut(s)	144
HspAI	GCGC	2 cut(s)	144, 549
KasI	GGCGCC	1 cut(s)	143
Ksp22I	TGATCA	1 cut(s)	429
KspI	CCGCGG	1 cut(s)	120
Kzo9I	GATC	1 cut(s)	429
LmnI	GCTCC	4 cut(s)	4, 110, 182, 450
LweI	GCATC	2 cut(s)	462, 609
MaeIII	GTNAC	1 cut(s)	873
MalI	GATC	1 cut(s)	431
MboI	GATC	1 cut(s)	429
MboII	GAAGA	5 cut(s)	47, 70, 683, 746, 782
MhlI	GDGCHC	1 cut(s)	473
MluCI	AATT	3 cut(s)	12, 156, 854
Mly113I	GGCGCC	1 cut(s)	144
MlyI	GAGTC	4 cut(s)	191, 533, 576, 767
MnlI	CCTC	4 cut(s)	95, 482, 491, 649
MseI	TTAA	2 cut(s)	408, 898
MslI	CAYNNNNRTG	3 cut(s)	225, 274, 581
MspA1I	CMGCKG	1 cut(s)	119
Mva1269I	GAATGC	1 cut(s)	576
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	7 cut(s)	119, 191, 370, 422, 459, 468, 749
NarI	GGCGCC	1 cut(s)	144
NcoI	CCATGG	2 cut(s)	483, 571
NdeII	GATC	1 cut(s)	429
NlaIV	GGNNCC	3 cut(s)	6, 145, 609
NmuCI	GTSAC	1 cut(s)	873
NspI	RCATGY	2 cut(s)	506, 558
NspV	TTCGAA	1 cut(s)	56
PceI	AGGCCT	1 cut(s)	492
PctI	GAATGC	1 cut(s)	576
PfeI	GAWTC	2 cut(s)	251, 643
PleI	GAGTC	4 cut(s)	191, 532, 575, 767
PluTI	GGCGCC	1 cut(s)	147
PpsI	GAGTC	4 cut(s)	191, 532, 575, 767
PshAI	GACNNNNGTC	1 cut(s)	871
PsiI	TTATAA	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	562
PspN4I	GGNNCC	3 cut(s)	6, 145, 609
PspPI	GGNCC	1 cut(s)	323
PstI	CTGCAG	1 cut(s)	478
PstNI	CAGNNNCTG	2 cut(s)	370, 749
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	3 cut(s)	225, 274, 581
SacII	CCGCGG	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	408, 898
Sau3AI	GATC	1 cut(s)	429
Sau96I	GGNCC	1 cut(s)	323
SchI	GAGTC	4 cut(s)	191, 533, 576, 767
SduI	GDGCHC	1 cut(s)	473
SfaNI	GCATC	2 cut(s)	462, 609
SfcI	CTRYAG	2 cut(s)	474, 634
SfoI	GGCGCC	1 cut(s)	145
Sfr303I	CCGCGG	1 cut(s)	120
SfuI	TTCGAA	1 cut(s)	56
SgrBI	CCGCGG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	323
SmiMI	CAYNNNNRTG	3 cut(s)	225, 274, 581
Sse9I	AATT	3 cut(s)	12, 156, 854
SseBI	AGGCCT	1 cut(s)	492
SsiI	CCGC	3 cut(s)	117, 119, 447
SspDI	GGCGCC	1 cut(s)	143
StuI	AGGCCT	1 cut(s)	492
StyI	CCWWGG	4 cut(s)	234, 483, 493, 571
TaaI	ACNGT	4 cut(s)	213, 224, 590, 730
TaqI	TCGA	2 cut(s)	56, 467
TasI	AATT	3 cut(s)	12, 156, 854
TauI	GCSGC	2 cut(s)	119, 122
TfiI	GAWTC	2 cut(s)	251, 643
Tru1I	TTAA	2 cut(s)	408, 898
Tru9I	TTAA	2 cut(s)	408, 898
TscAI	CASTG	4 cut(s)	195, 227, 478, 772
TseFI	GTSAC	1 cut(s)	873
Tsp45I	GTSAC	1 cut(s)	873
TspDTI	ATGAA	3 cut(s)	48, 772, 835
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	4 cut(s)	195, 227, 478, 772
VpaK11BI	GGWCC	1 cut(s)	323
XapI	RAATTY	1 cut(s)	12
XceI	RCATGY	2 cut(s)	506, 558
XcmI	CCANNNNNNNNNTGG	2 cut(s)	349, 535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.