Prupe.1G340300_v2.0.a1

Short-chain dehydrogenase reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015203
Physical Location & Seq
Reverse (-)
32001151 .. 32002588
1438 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G340300.1

Sequence Viewer

Length: 864 bp
ATGGATCCATCAATTCCAATGCATGATGAAGAAGAAGCCCAGAGGCTGCCTCCAAAGAGGTTGGTGAACAAAGTGGCAGTCATAACTGGGGGTGCAAGAGGGATTGGAGCTGCCACAGCCAAGTTGTTTGCCGATCACGGTGCCCGCGTTGTCATTGCTGACATACTTGACGACTTGGGAGCCACACTAGCTGATTCTATCGGAGGCCGCTACATACACTGTGATGTGGCAAAGGAAGCTGATATTGAATCAGCTATTGAGCTTGCGCTCAAATGGAAAGGTCGACTTGACATCATGTTCAACAATGCTGGCGTTCCTGGTCCCTCGGGGAGCATAACCAGCCTTGACATGGAGAATGTGAAGCACCTCCTCTCCGTCAATGTTCTTGGCGTTATACATGGAATCAAGTATGCTGCTGCCGCTATGATCAAGGGCCGAATAGGAGGGAGCATCCTTTGCACATCGAGCTCGGCAGCTATCATGGGAGGCCTTGGAGGACATGCCTATACGCTGTCCAAGGAGGCCATCAACGGCCTGGTGAGAAGCGCCGCTTGTGAGTTGGGAGTGCATGGCATTCGTGTGAACTGCATTTCGCCCCATGGGGTTCCTTCAGAGATGCTCGTCAGTGCCTACAGAGAGCATCTCGGGAAAATGGATATGACGGCTGAAGACGTAAGCAAAATTGTAGGGGAAAGGGGGAGCTTGTTGCGTGGGAGATGTGCAACTGTGGAAGATGTAGCAGAAGCTGCATTGTTCGTAGCCAGTGAGGACGCTGGCTTCATAACAGCACATAATCTGGTTCTTGATGGGGGTTATACTTCTGCTTGCAGTACCATGAGCTTCATCTACCAAAATGGTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

288

Amino Acids

29.98

Weight (kDa)

5.86

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015203)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G42960
fragaria_vesca FvH4_4g35960
malus_domestica MD13G1013400.v1.1 MD16G1010300.v1.1
prunus_persica Prupe.1G340300_v2.0.a1
pyrus_communis pycom16g01010
rosa_laevigata RLG00000005727
rosa_multiflora Rmu_ssc0000107.1_g000001 Rmu_ssc0000253.1_g000009
rosa_roxburghii Rroxscaffold_5G00386070
rosa_rugosa Rorug04G0362800
rosa_samantha Rh4AG424200 Rh4BG436300 Rh4CG450900 Rh4DG432800
rosa_wichuraiana Rw4G036370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 283
AccII CGCG 1 cut(s) 147
AciI CCGC 4 cut(s) 145, 208, 420, 549
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 2 cut(s) 594, 687
AfaI GTAC 1 cut(s) 832
AfiI CCNNNNNNNGG 1 cut(s) 349
AgsI TTSAA 2 cut(s) 248, 301
AjnI CCWGG 2 cut(s) 316, 534
Alw21I GWGCWC 1 cut(s) 470
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 2 cut(s) 46, 746
Ama87I CYCGRG 2 cut(s) 325, 644
AoxI GGCC 5 cut(s) 205, 433, 487, 522, 532
ApeKI GCWGC 6 cut(s) 46, 110, 413, 416, 473, 746
ArsI GACNNNNNNTTYG 2 cut(s) 63, 95
AspLEI GCGC 2 cut(s) 268, 548
AspS9I GGNCC 2 cut(s) 320, 433
AsuHPI GGTGA 2 cut(s) 76, 550
AvaI CYCGRG 2 cut(s) 325, 644
AvaII GGWCC 1 cut(s) 320
BaeGI GKGCMC 1 cut(s) 145
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 470
BbsI GAAGAC 1 cut(s) 675
Bbv12I GWGCWC 1 cut(s) 470
BbvI GCAGC 6 cut(s) 33, 97, 400, 403, 485, 733
BccI CCATC 3 cut(s) 16, 533, 800
BceAI ACGGC 2 cut(s) 547, 678
BcgI CGANNNNNNTGC 4 cut(s) 122, 156, 557, 591
BciT130I CCWGG 2 cut(s) 318, 536
BclI TGATCA 1 cut(s) 426
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 631
BfoI RGCGCY 1 cut(s) 549
BisI GCNGC 9 cut(s) 47, 111, 208, 414, 417, 420, 474, 549, 747
BlsI GCNGC 9 cut(s) 48, 112, 209, 415, 418, 421, 475, 550, 748
Bme1390I CCNGG 2 cut(s) 318, 536
Bme18I GGWCC 1 cut(s) 320
BmeT110I CYCGRG 2 cut(s) 325, 644
BmgT120I GGNCC 2 cut(s) 320, 433
BmiI GGNNCC 5 cut(s) 6, 142, 181, 322, 606
BmrFI CCNGG 2 cut(s) 318, 536
BmrI ACTGGG 1 cut(s) 96
BmsI GCATC 3 cut(s) 459, 606, 649
BmuI ACTGGG 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 675
BplI GAGNNNNNCTC 4 cut(s) 34, 66, 627, 659
BsaJI CCNNGG 4 cut(s) 324, 490, 516, 598
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse1I ACTGG 2 cut(s) 91, 762
Bse3DI GCAATG 1 cut(s) 153
BseBI CCWGG 2 cut(s) 318, 536
BseDI CCNNGG 4 cut(s) 324, 490, 516, 598
BseGI GGATG 1 cut(s) 450
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMI GCAATG 1 cut(s) 153
BseNI ACTGG 2 cut(s) 91, 762
BseRI GAGGAG 1 cut(s) 359
BseSI GKGCMC 1 cut(s) 145
BseXI GCAGC 6 cut(s) 33, 97, 400, 403, 485, 733
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 5 cut(s) 207, 435, 489, 524, 534
BshNI GGYRCC 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 470
BsiHKCI CYCGRG 2 cut(s) 325, 644
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 349
BsmFI GGGAC 1 cut(s) 306
BsmI GAATGC 1 cut(s) 573
BsnI GGCC 5 cut(s) 207, 435, 489, 524, 534
BsoBI CYCGRG 2 cut(s) 325, 644
Bsp1286I GDGCHC 2 cut(s) 145, 470
Bsp143I GATC 3 cut(s) 4, 133, 426
Bsp19I CCATGG 1 cut(s) 598
BspACI CCGC 4 cut(s) 145, 208, 420, 549
BspANI GGCC 5 cut(s) 207, 435, 489, 524, 534
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 5 cut(s) 6, 142, 181, 322, 606
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 153
BsrI ACTGG 2 cut(s) 91, 762
BssECI CCNNGG 4 cut(s) 324, 490, 516, 598
BssMI GATC 3 cut(s) 4, 133, 426
BssT1I CCWWGG 3 cut(s) 490, 516, 598
Bst2UI CCWGG 2 cut(s) 318, 536
Bst4CI ACNGT 3 cut(s) 140, 221, 727
BstAPI GCANNNNNTGC 2 cut(s) 456, 746
BstC8I GCNNGC 5 cut(s) 145, 264, 310, 775, 826
BstDSI CCRYGG 1 cut(s) 598
BstF5I GGATG 1 cut(s) 450
BstFNI CGCG 1 cut(s) 147
BstH2I RGCGCY 1 cut(s) 549
BstHHI GCGC 2 cut(s) 268, 548
BstKTI GATC 3 cut(s) 7, 136, 429
BstMBI GATC 3 cut(s) 4, 133, 426
BstMWI GCNNNNNNNGC 8 cut(s) 116, 188, 236, 339, 419, 456, 465, 746
BstNI CCWGG 2 cut(s) 318, 536
BstNSI RCATGY 1 cut(s) 503
BstSCI CCNGG 2 cut(s) 316, 534
BstSFI CTRYAG 1 cut(s) 631
BstSLI GKGCMC 1 cut(s) 145
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 6 cut(s) 33, 97, 400, 403, 485, 733
BstV2I GAAGAC 1 cut(s) 675
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 5 cut(s) 207, 435, 489, 524, 534
BtgI CCRYGG 1 cut(s) 598
BtsCI GGATG 1 cut(s) 450
BtsIMutI CAGTG 3 cut(s) 217, 631, 769
Cac8I GCNNGC 5 cut(s) 145, 264, 310, 775, 826
CaiI CAGNNNCTG 2 cut(s) 46, 746
CfoI GCGC 2 cut(s) 268, 548
Cfr13I GGNCC 2 cut(s) 320, 433
CseI GACGC 1 cut(s) 779
Csp6I GTAC 1 cut(s) 831
CviAII CATG 9 cut(s) 23, 295, 349, 398, 481, 500, 569, 599, 835
CviQI GTAC 1 cut(s) 831
DpnI GATC 3 cut(s) 6, 135, 428
DpnII GATC 3 cut(s) 4, 133, 426
Ecl136II GAGCTC 1 cut(s) 468
Eco130I CCWWGG 3 cut(s) 490, 516, 598
Eco147I AGGCCT 1 cut(s) 489
Eco24I GRGCYC 1 cut(s) 470
Eco47I GGWCC 1 cut(s) 320
Eco53kI GAGCTC 1 cut(s) 468
Eco57I CTGAAG 2 cut(s) 594, 687
Eco88I CYCGRG 2 cut(s) 325, 644
EcoICRI GAGCTC 1 cut(s) 468
EcoRII CCWGG 2 cut(s) 316, 534
EcoT14I CCWWGG 3 cut(s) 490, 516, 598
EcoT22I ATGCAT 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 470
ErhI CCWWGG 3 cut(s) 490, 516, 598
FaeI CATG 9 cut(s) 26, 298, 352, 401, 484, 503, 572, 602, 838
FalI AAGNNNNNCTT 4 cut(s) 270, 302, 535, 567
FaqI GGGAC 1 cut(s) 306
FatI CATG 9 cut(s) 22, 294, 348, 397, 480, 499, 568, 598, 834
FauI CCCGC 1 cut(s) 152
FbaI TGATCA 1 cut(s) 426
FblI GTMKAC 1 cut(s) 283
Fnu4HI GCNGC 9 cut(s) 47, 111, 208, 414, 417, 420, 474, 549, 747
FokI GGATG 1 cut(s) 437
FriOI GRGCYC 1 cut(s) 470
Fsp4HI GCNGC 9 cut(s) 47, 111, 208, 414, 417, 420, 474, 549, 747
FspBI CTAG 1 cut(s) 188
GlaI GCGC 2 cut(s) 267, 547
GluI GCNGC 9 cut(s) 47, 111, 208, 414, 417, 420, 474, 549, 747
HaeII RGCGCY 1 cut(s) 549
HaeIII GGCC 5 cut(s) 207, 435, 489, 524, 534
HgaI GACGC 1 cut(s) 779
HhaI GCGC 2 cut(s) 268, 548
Hin1II CATG 9 cut(s) 26, 298, 352, 401, 484, 503, 572, 602, 838
Hin6I GCGC 2 cut(s) 266, 546
HinP1I GCGC 2 cut(s) 266, 546
HincII GTYRAC 1 cut(s) 284
HindII GTYRAC 1 cut(s) 284
HinfI GANTC 3 cut(s) 194, 248, 402
HphI GGTGA 2 cut(s) 76, 550
Hpy166II GTNNAC 3 cut(s) 67, 284, 583
Hpy188I TCNGA 2 cut(s) 203, 613
Hpy188III TCNNGA 2 cut(s) 646, 803
Hpy8I GTNNAC 3 cut(s) 67, 284, 583
HpyAV CCTTC 1 cut(s) 618
HpyCH4III ACNGT 3 cut(s) 140, 221, 727
HpyCH4IV ACGT 1 cut(s) 672
HpyCH4V TGCA 8 cut(s) 22, 95, 459, 568, 588, 722, 749, 828
HpyF10VI GCNNNNNNNGC 8 cut(s) 116, 188, 236, 339, 419, 456, 465, 746
HpySE526I ACGT 1 cut(s) 672
Hsp92II CATG 9 cut(s) 26, 298, 352, 401, 484, 503, 572, 602, 838
HspAI GCGC 2 cut(s) 266, 546
Ksp22I TGATCA 1 cut(s) 426
Kzo9I GATC 3 cut(s) 4, 133, 426
LmnI GCTCC 5 cut(s) 107, 179, 330, 447, 699
Lsp1109I GCAGC 6 cut(s) 33, 97, 400, 403, 485, 733
LweI GCATC 3 cut(s) 459, 606, 649
MaeI CTAG 1 cut(s) 188
MaeII ACGT 1 cut(s) 672
MalI GATC 3 cut(s) 6, 135, 428
MboI GATC 3 cut(s) 4, 133, 426
MboII GAAGA 4 cut(s) 41, 44, 680, 743
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 145, 470
MluCI AATT 2 cut(s) 12, 681
Mph1103I ATGCAT 1 cut(s) 24
MseI TTAA 1 cut(s) 862
MslI CAYNNNNRTG 2 cut(s) 222, 578
MspR9I CCNGG 2 cut(s) 318, 536
Mva1269I GAATGC 1 cut(s) 573
MvaI CCWGG 2 cut(s) 318, 536
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 8 cut(s) 116, 188, 236, 339, 419, 456, 465, 746
NcoI CCATGG 1 cut(s) 598
NdeII GATC 3 cut(s) 4, 133, 426
NlaIII CATG 9 cut(s) 26, 298, 352, 401, 484, 503, 572, 602, 838
NlaIV GGNNCC 5 cut(s) 6, 142, 181, 322, 606
NmeAIII GCCGAG 1 cut(s) 449
NsiI ATGCAT 1 cut(s) 24
NspI RCATGY 1 cut(s) 503
PceI AGGCCT 1 cut(s) 489
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PctI GAATGC 1 cut(s) 573
PfeI GAWTC 3 cut(s) 194, 248, 402
PkrI GCNGC 9 cut(s) 48, 112, 209, 415, 418, 421, 475, 550, 748
Psp124BI GAGCTC 1 cut(s) 470
Psp6I CCWGG 2 cut(s) 316, 534
PspGI CCWGG 2 cut(s) 316, 534
PspN4I GGNNCC 5 cut(s) 6, 142, 181, 322, 606
PspPI GGNCC 2 cut(s) 320, 433
PstNI CAGNNNCTG 2 cut(s) 46, 746
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 832
RsaNI GTAC 1 cut(s) 831
RseI CAYNNNNRTG 2 cut(s) 222, 578
SacI GAGCTC 1 cut(s) 470
SalI GTCGAC 1 cut(s) 282
SaqAI TTAA 1 cut(s) 862
SatI GCNGC 9 cut(s) 47, 111, 208, 414, 417, 420, 474, 549, 747
Sau3AI GATC 3 cut(s) 4, 133, 426
Sau96I GGNCC 2 cut(s) 320, 433
ScrFI CCNGG 2 cut(s) 318, 536
SduI GDGCHC 2 cut(s) 145, 470
SfaNI GCATC 3 cut(s) 459, 606, 649
SfcI CTRYAG 1 cut(s) 631
SinI GGWCC 1 cut(s) 320
SmiMI CAYNNNNRTG 2 cut(s) 222, 578
Sse9I AATT 2 cut(s) 12, 681
SseBI AGGCCT 1 cut(s) 489
SsiI CCGC 4 cut(s) 145, 208, 420, 549
SspMI CTAG 1 cut(s) 188
SstI GAGCTC 1 cut(s) 470
StuI AGGCCT 1 cut(s) 489
StyD4I CCNGG 2 cut(s) 316, 534
StyI CCWWGG 3 cut(s) 490, 516, 598
TaaI ACNGT 3 cut(s) 140, 221, 727
TaiI ACGT 1 cut(s) 675
TaqI TCGA 2 cut(s) 283, 464
TasI AATT 2 cut(s) 12, 681
TauI GCSGC 3 cut(s) 210, 422, 551
TfiI GAWTC 3 cut(s) 194, 248, 402
Tru1I TTAA 1 cut(s) 862
Tru9I TTAA 1 cut(s) 862
TscAI CASTG 3 cut(s) 224, 631, 769
TseI GCWGC 6 cut(s) 46, 110, 413, 416, 473, 746
TspDTI ATGAA 3 cut(s) 42, 769, 832
TspGWI ACGGA 1 cut(s) 364
TspRI CASTG 3 cut(s) 224, 631, 769
VpaK11BI GGWCC 1 cut(s) 320
XceI RCATGY 1 cut(s) 503
XcmI CCANNNNNNNNNTGG 2 cut(s) 346, 532
XmiI GTMKAC 1 cut(s) 283
XspI CTAG 1 cut(s) 188
Zsp2I ATGCAT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.