Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015203

Physical Location & Seq

Genomic Coordinates Reverse (-)

33078011 .. 33079215

Gene Structure 1205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAGAGGAAAACTCTGCTGCCTTCTAAGAAGTTGGTGAACAAAGTCGCGGTTATAACCGGGGGTGCGAGAGGGATTGGAGCTGCTGCGGCCACGCTGTTTGCGCAGAATGGCGCGCATGTTGTGATCGCCGACATACTTGACGATTTGGGAGCTGCGCTGGCTGAATCTATAGAGGGACGGTACGTACACTGCGATGTGTCCAAGGAAGCTGATGTTGAATCAGCTATTGAGCTTGCGCTCAGATGGAAAGGCCAGCTTGACATCATGTTCAACAATGCCGGTATTTCTGGTCCGTCGGGGAGTATAACCAGTCTTGACATGGGAAAGGTACAGCAGCTGCTCTCGGTGAATATTTTTGGCTATTTACATGGGATTAAGTATGCGGCAGCAGCTATGATCAAAACCAGAACAAATGGGAGCATCATCTGCACATCAAGCTCTGCAGCTATCATGGGAGGCCTTGGAGGACATGCCTACACGTTGTCGAAGGAGGCCATCAATGGACTGGTGAGAAGCGCAGCATGCGAGTTGGGAGTCCATGGCATTCGTGTGAACAGCATTTCACCACACGGGGTTCCTACAGAGATTTTGGTCACTGCCTACAGAGAGCTTCTTAGGAAGGAGGATATGCAGGCCGAAGATGTAAGCAAGATTGTGGGGGAAACAGGGAGCTTGTTGCGTGGCAGATGTGCAACCGTGAAAGACGTAGCAGAAGCTGCATTATTCCTTGCCAGTGAAGACTCAGGGTTCATAACAGCCCATAATCTTGTCCTTGATGGGGGTTATACTTCTGCTACCAGTACCTTGAGTTTCATCTATCAATCTACCAACAGGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

281

Amino Acids

29.35

Weight (kDa)

6.18

Isoelectric Point (pI)

28.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	15 - 199	4.1e-44	short chain dehydrogenase
KR	PF08659	18 - 175	1.5e-07	KR domain
adh_short_C2	PF13561	22 - 264	2.5e-54	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42960
fragaria_vesca	FvH4_4g35960
malus_domestica	MD13G1013400.v1.1 MD16G1010300.v1.1
prunus_persica	Prupe.1G340300_v2.0.a1
pyrus_communis	pycom16g01010
rosa_laevigata	RLG00000005727
rosa_multiflora	Rmu_ssc0000107.1_g000001 Rmu_ssc0000253.1_g000009
rosa_roxburghii	Rroxscaffold_5G00386070
rosa_rugosa	Rorug04G0362800
rosa_samantha	Rh4AG424200 Rh4BG436300 Rh4CG450900 Rh4DG432800
rosa_wichuraiana	Rw4G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	56
Acc16I	TGCGCA	1 cut(s)	105
AccII	CGCG	2 cut(s)	50, 116
AciI	CCGC	3 cut(s)	50, 89, 386
AcoI	YGGCCR	1 cut(s)	90
AfaI	GTAC	4 cut(s)	185, 189, 333, 805
AfiI	CCNNNNNNNGG	1 cut(s)	781
AflIII	ACRYGT	1 cut(s)	480
AgsI	TTSAA	2 cut(s)	221, 274
AlwNI	CAGNNNCTG	2 cut(s)	340, 719
AoxI	GGCC	5 cut(s)	90, 253, 460, 495, 636
AspLEI	GCGC	6 cut(s)	106, 116, 118, 160, 241, 521
AspS9I	GGNCC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	4 cut(s)	49, 361, 523, 558
AvaII	GGWCC	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	747
BccI	CCATC	3 cut(s)	240, 506, 773
BclI	TGATCA	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	61
BfmI	CTRYAG	4 cut(s)	171, 444, 582, 604
Bme1390I	CCNGG	1 cut(s)	61
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	579
BmrFI	CCNGG	1 cut(s)	61
BmsI	GCATC	1 cut(s)	432
BpiI	GAAGAC	1 cut(s)	747
BplI	GAGNNNNNCTC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	829
BpuMI	CCSGG	1 cut(s)	61
BsaAI	YACGTR	1 cut(s)	187
BsaJI	CCNNGG	4 cut(s)	60, 204, 463, 541
Bsc4I	CCNNNNNNNGG	1 cut(s)	781
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	4 cut(s)	312, 513, 735, 801
BseDI	CCNNGG	4 cut(s)	60, 204, 463, 541
BseLI	CCNNNNNNNGG	1 cut(s)	781
BseMII	CTCAG	2 cut(s)	256, 759
BseNI	ACTGG	4 cut(s)	312, 513, 735, 801
BsePI	GCGCGC	1 cut(s)	114
BsgI	GTGCAG	1 cut(s)	415
Bsh1236I	CGCG	2 cut(s)	50, 116
BshFI	GGCC	5 cut(s)	92, 255, 462, 497, 638
BsiSI	CCGG	2 cut(s)	60, 282
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	781
BsmFI	GGGAC	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	546
BsnI	GGCC	5 cut(s)	92, 255, 462, 497, 638
Bsp143I	GATC	2 cut(s)	126, 399
Bsp19I	CCATGG	1 cut(s)	541
BspACI	CCGC	3 cut(s)	50, 89, 386
BspANI	GGCC	5 cut(s)	92, 255, 462, 497, 638
BspCNI	CTCAG	2 cut(s)	255, 758
BspFNI	CGCG	2 cut(s)	50, 116
BspLI	GGNNCC	1 cut(s)	579
BspMAI	CTGCAG	1 cut(s)	448
BsrFI	RCCGGY	1 cut(s)	281
BsrI	ACTGG	4 cut(s)	312, 513, 735, 801
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	4 cut(s)	60, 204, 463, 541
BssHII	GCGCGC	1 cut(s)	114
BssMI	GATC	2 cut(s)	126, 399
BssT1I	CCWWGG	3 cut(s)	204, 463, 541
Bst4CI	ACNGT	2 cut(s)	183, 700
BstAPI	GCANNNNNTGC	2 cut(s)	429, 719
BstBAI	YACGTR	1 cut(s)	187
BstC8I	GCNNGC	6 cut(s)	116, 162, 237, 257, 526, 636
BstDEI	CTNAG	4 cut(s)	27, 242, 617, 745
BstDSI	CCRYGG	1 cut(s)	541
BstFNI	CGCG	2 cut(s)	50, 116
BstHHI	GCGC	6 cut(s)	106, 116, 118, 160, 241, 521
BstKTI	GATC	2 cut(s)	129, 402
BstMBI	GATC	2 cut(s)	126, 399
BstMWI	GCNNNNNNNGC	8 cut(s)	89, 103, 161, 392, 429, 438, 525, 719
BstNSI	RCATGY	3 cut(s)	122, 476, 528
BstSCI	CCNGG	1 cut(s)	59
BstSFI	CTRYAG	4 cut(s)	171, 444, 582, 604
BstSNI	TACGTA	1 cut(s)	187
BstUI	CGCG	2 cut(s)	50, 116
BstV2I	GAAGAC	1 cut(s)	747
BsuRI	GGCC	5 cut(s)	92, 255, 462, 497, 638
BtgI	CCRYGG	1 cut(s)	541
BtgZI	GCGATG	1 cut(s)	210
BtsI	GCAGTG	2 cut(s)	190, 597
BtsIMutI	CAGTG	3 cut(s)	190, 597, 742
Cac8I	GCNNGC	6 cut(s)	116, 162, 237, 257, 526, 636
CaiI	CAGNNNCTG	2 cut(s)	340, 719
CfoI	GCGC	6 cut(s)	106, 116, 118, 160, 241, 521
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	4 cut(s)	184, 188, 332, 804
CspCI	CAANNNNNGTGG	2 cut(s)	82, 117
CviAII	CATG	8 cut(s)	119, 268, 322, 371, 454, 473, 525, 542
CviQI	GTAC	4 cut(s)	184, 188, 332, 804
DdeI	CTNAG	4 cut(s)	27, 242, 617, 745
DpnI	GATC	2 cut(s)	128, 401
DpnII	GATC	2 cut(s)	126, 399
EaeI	YGGCCR	1 cut(s)	90
Eco105I	TACGTA	1 cut(s)	187
Eco130I	CCWWGG	3 cut(s)	204, 463, 541
Eco147I	AGGCCT	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	293
EcoT14I	CCWWGG	3 cut(s)	204, 463, 541
ErhI	CCWWGG	3 cut(s)	204, 463, 541
FaeI	CATG	8 cut(s)	122, 271, 325, 374, 457, 476, 528, 545
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	8 cut(s)	118, 267, 321, 370, 453, 472, 524, 541
FbaI	TGATCA	1 cut(s)	399
FspI	TGCGCA	1 cut(s)	105
GlaI	GCGC	6 cut(s)	105, 115, 117, 159, 240, 520
HaeIII	GGCC	5 cut(s)	92, 255, 462, 497, 638
HapII	CCGG	2 cut(s)	60, 282
HhaI	GCGC	6 cut(s)	106, 116, 118, 160, 241, 521
Hin1II	CATG	8 cut(s)	122, 271, 325, 374, 457, 476, 528, 545
Hin6I	GCGC	6 cut(s)	104, 114, 116, 158, 239, 519
HinP1I	GCGC	6 cut(s)	104, 114, 116, 158, 239, 519
HinfI	GANTC	4 cut(s)	167, 221, 537, 743
HpaII	CCGG	2 cut(s)	60, 282
HphI	GGTGA	4 cut(s)	49, 361, 523, 558
Hpy166II	GTNNAC	3 cut(s)	40, 190, 556
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	3 cut(s)	40, 190, 556
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	3 cut(s)	33, 484, 616
HpyCH4III	ACNGT	2 cut(s)	183, 700
HpyCH4IV	ACGT	3 cut(s)	186, 482, 708
HpyCH4V	TGCA	5 cut(s)	432, 446, 634, 695, 722
HpyF10VI	GCNNNNNNNGC	8 cut(s)	89, 103, 161, 392, 429, 438, 525, 719
HpyF3I	CTNAG	4 cut(s)	27, 242, 617, 745
HpySE526I	ACGT	3 cut(s)	186, 482, 708
Hsp92II	CATG	8 cut(s)	122, 271, 325, 374, 457, 476, 528, 545
HspAI	GCGC	6 cut(s)	104, 114, 116, 158, 239, 519
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	2 cut(s)	126, 399
LmnI	GCTCC	4 cut(s)	80, 152, 420, 672
LweI	GCATC	1 cut(s)	432
MaeII	ACGT	3 cut(s)	186, 482, 708
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	2 cut(s)	128, 401
MboI	GATC	2 cut(s)	126, 399
MboII	GAAGA	2 cut(s)	653, 752
MlyI	GAGTC	2 cut(s)	546, 737
MnlI	CCTC	6 cut(s)	65, 169, 452, 461, 487, 619
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	2 cut(s)	195, 551
MspA1I	CMGCKG	1 cut(s)	340
MspI	CCGG	2 cut(s)	60, 282
MspR9I	CCNGG	1 cut(s)	61
Mva1269I	GAATGC	1 cut(s)	546
MvnI	CGCG	2 cut(s)	50, 116
MwoI	GCNNNNNNNGC	8 cut(s)	89, 103, 161, 392, 429, 438, 525, 719
NciI	CCSGG	1 cut(s)	61
NcoI	CCATGG	1 cut(s)	541
NdeII	GATC	2 cut(s)	126, 399
NlaIII	CATG	8 cut(s)	122, 271, 325, 374, 457, 476, 528, 545
NlaIV	GGNNCC	1 cut(s)	579
NmuCI	GTSAC	1 cut(s)	595
NsbI	TGCGCA	1 cut(s)	105
NspI	RCATGY	3 cut(s)	122, 476, 528
PaeI	GCATGC	1 cut(s)	528
PauI	GCGCGC	1 cut(s)	114
PceI	AGGCCT	1 cut(s)	462
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PctI	GAATGC	1 cut(s)	546
PfeI	GAWTC	2 cut(s)	167, 221
PleI	GAGTC	2 cut(s)	545, 737
PpsI	GAGTC	2 cut(s)	545, 737
Ppu21I	YACGTR	1 cut(s)	187
PsiI	TTATAA	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	579
PspPI	GGNCC	1 cut(s)	293
PstI	CTGCAG	1 cut(s)	448
PstNI	CAGNNNCTG	2 cut(s)	340, 719
PteI	GCGCGC	1 cut(s)	114
PvuII	CAGCTG	1 cut(s)	340
RsaI	GTAC	4 cut(s)	185, 189, 333, 805
RsaNI	GTAC	4 cut(s)	184, 188, 332, 804
RseI	CAYNNNNRTG	2 cut(s)	195, 551
SaqAI	TTAA	1 cut(s)	378
Sau3AI	GATC	2 cut(s)	126, 399
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	2 cut(s)	546, 737
ScrFI	CCNGG	1 cut(s)	61
SfaNI	GCATC	1 cut(s)	432
SfcI	CTRYAG	4 cut(s)	171, 444, 582, 604
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	2 cut(s)	195, 551
SmlI	CTYRAG	1 cut(s)	808
SmoI	CTYRAG	1 cut(s)	808
SnaBI	TACGTA	1 cut(s)	187
SphI	GCATGC	1 cut(s)	528
SseBI	AGGCCT	1 cut(s)	462
SsiI	CCGC	3 cut(s)	50, 89, 386
SspI	AATATT	1 cut(s)	355
StuI	AGGCCT	1 cut(s)	462
StyD4I	CCNGG	1 cut(s)	59
StyI	CCWWGG	3 cut(s)	204, 463, 541
TaaI	ACNGT	2 cut(s)	183, 700
TaiI	ACGT	3 cut(s)	189, 485, 711
TaqI	TCGA	1 cut(s)	488
TauI	GCSGC	2 cut(s)	92, 389
TfiI	GAWTC	2 cut(s)	167, 221
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	3 cut(s)	197, 604, 742
TseFI	GTSAC	1 cut(s)	595
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	2 cut(s)	742, 805
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	3 cut(s)	197, 604, 742
VpaK11BI	GGWCC	1 cut(s)	293
XceI	RCATGY	3 cut(s)	122, 476, 528
XcmI	CCANNNNNNNNNTGG	2 cut(s)	319, 505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.