AT3G44350
NAC Family

NAC domain containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007123
Physical Location & Seq
Reverse (-)
16022575 .. 16024519
1945 bp
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UTR
Exon/CDS
Intron
AT3G44350.2

Sequence Viewer

Length: 483 bp
ATGGGAGAAGAGCTTTCTGTAGGGTTTCGGTTCTATCCGACCGAAGTAGAGCTCCTTACGTATTACCTAAGAATCCAGCTTGGTGGAGGAAATGCCACCATTCATAGTCTCATACCGATCCTCGATGTGTTTAGCGTTGAGCCTACTCAGCTTCCAAATCTTGCGGGAGAGAGGTGTCGAGGAGATGCAGAACAATGGATTTTCTTTGTGCCAAGACAAGAGCGTGAAGCTAGAGGAGGCAGACCAAGTAGGACCACTGGTTCAGGATACTGGAAAGCAACTGGTTCACCTGGACCCGTGTTCTCGCCGGATAACCGAGTGATCGGAGTAAAGAAGACGATGGTTTTCTATACCGGAAAAGCACCTACTGGGAGAAAGACAAAGTGGAAGATGAATGAATATAAAGCAGTTGAAACAGCCAGTGTATCTACCATCCCAAAGGTGCATAATCACTTCTTTAAAATGAAGACTTTCATCAAATAA

Protein Analysis

160

Amino Acids

18.03

Weight (kDa)

9.81

Isoelectric Point (pI)

37.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 135 1.4e-32 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 164
AclWI GGATC 1 cut(s) 112
AgsI TTSAA 1 cut(s) 413
AjnI CCWGG 1 cut(s) 289
AloI GAACNNNNNNTCC 2 cut(s) 244, 276
AluBI AGCT 5 cut(s) 13, 52, 79, 151, 230
AluI AGCT 5 cut(s) 13, 52, 79, 151, 230
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 1 cut(s) 112
Asp700I GAANNNNTTC 1 cut(s) 470
AspS9I GGNCC 2 cut(s) 252, 293
AsuHPI GGTGA 1 cut(s) 279
AvaII GGWCC 2 cut(s) 252, 293
BanII GRGCYC 1 cut(s) 54
BbsI GAAGAC 2 cut(s) 341, 473
Bbv12I GWGCWC 1 cut(s) 54
BccI CCATC 2 cut(s) 334, 440
BciT130I CCWGG 1 cut(s) 291
BciVI GTATCC 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 1 cut(s) 231
BfmI CTRYAG 1 cut(s) 18
BfuI GTATCC 1 cut(s) 260
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 2 cut(s) 252, 293
BmgT120I GGNCC 2 cut(s) 252, 293
BmiI GGNNCC 1 cut(s) 295
BmrFI CCNGG 1 cut(s) 291
BmrI ACTGGG 1 cut(s) 378
BmsI GCATC 1 cut(s) 175
BmuI ACTGGG 1 cut(s) 378
BpiI GAAGAC 2 cut(s) 341, 473
BsaAI YACGTR 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 353
Bse1I ACTGG 5 cut(s) 262, 275, 286, 373, 420
BseBI CCWGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 432
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 5 cut(s) 262, 275, 286, 373, 420
BseRI GAGGAG 2 cut(s) 195, 249
Bsh1285I CGRYCG 1 cut(s) 42
BsiEI CGRYCG 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 2 cut(s) 308, 354
BsmAI GTCTC 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 2 cut(s) 117, 321
BspACI CCGC 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 295
BspPI GGATC 1 cut(s) 112
BspQI GCTCTTC 1 cut(s) 3
BsrI ACTGG 5 cut(s) 262, 275, 286, 373, 420
BssMI GATC 2 cut(s) 117, 321
Bst2UI CCWGG 1 cut(s) 291
Bst6I CTCTTC 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 60
BstDEI CTNAG 2 cut(s) 68, 147
BstF5I GGATG 1 cut(s) 432
BstKTI GATC 2 cut(s) 120, 324
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 2 cut(s) 117, 321
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 18
BstSNI TACGTA 1 cut(s) 60
BstV2I GAAGAC 2 cut(s) 341, 473
BstXI CCANNNNNNTGG 1 cut(s) 83
BsuI GTATCC 1 cut(s) 260
BtsCI GGATG 1 cut(s) 432
BtsIMutI CAGTG 2 cut(s) 255, 427
Cfr13I GGNCC 2 cut(s) 252, 293
CviJI RGCY 7 cut(s) 13, 52, 79, 142, 151, 230, 419
CviKI_1 RGCY 7 cut(s) 13, 52, 79, 142, 151, 230, 419
DdeI CTNAG 2 cut(s) 68, 147
DpnI GATC 2 cut(s) 119, 323
DpnII GATC 2 cut(s) 117, 321
DraI TTTAAA 1 cut(s) 460
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 52
Eco105I TACGTA 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 54
Eco47I GGWCC 2 cut(s) 252, 293
Eco53kI GAGCTC 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 54
FaiI YATR 5 cut(s) 105, 113, 351, 402, 447
FauI CCCGC 1 cut(s) 157
FokI GGATG 1 cut(s) 419
FriOI GRGCYC 1 cut(s) 54
FspBI CTAG 1 cut(s) 231
HapII CCGG 2 cut(s) 308, 354
HinfI GANTC 1 cut(s) 72
HpaII CCGG 2 cut(s) 308, 354
HphI GGTGA 1 cut(s) 279
Hpy166II GTNNAC 1 cut(s) 287
Hpy188I TCNGA 2 cut(s) 39, 326
Hpy188III TCNNGA 1 cut(s) 264
Hpy8I GTNNAC 1 cut(s) 287
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 2 cut(s) 188, 445
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpyF3I CTNAG 2 cut(s) 68, 147
HpySE526I ACGT 1 cut(s) 59
Kzo9I GATC 2 cut(s) 117, 321
LguI GCTCTTC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 57
LweI GCATC 1 cut(s) 175
MaeI CTAG 1 cut(s) 231
MaeII ACGT 1 cut(s) 59
MalI GATC 2 cut(s) 119, 323
MboI GATC 2 cut(s) 117, 321
MboII GAAGA 4 cut(s) 20, 346, 400, 478
MhlI GDGCHC 1 cut(s) 54
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 6 cut(s) 80, 131, 165, 173, 227, 230
MroXI GAANNNNTTC 1 cut(s) 470
MseI TTAA 1 cut(s) 459
MspI CCGG 2 cut(s) 308, 354
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 148
NdeII GATC 2 cut(s) 117, 321
NlaIV GGNNCC 1 cut(s) 295
PciSI GCTCTTC 1 cut(s) 3
PdmI GAANNNNTTC 1 cut(s) 470
PfeI GAWTC 1 cut(s) 72
Ppu21I YACGTR 1 cut(s) 60
Psp124BI GAGCTC 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 295
PspPI GGNCC 2 cut(s) 252, 293
SacI GAGCTC 1 cut(s) 54
SapI GCTCTTC 1 cut(s) 3
SaqAI TTAA 1 cut(s) 459
Sau3AI GATC 2 cut(s) 117, 321
Sau96I GGNCC 2 cut(s) 252, 293
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 54
SfaNI GCATC 1 cut(s) 175
SfcI CTRYAG 1 cut(s) 18
SinI GGWCC 2 cut(s) 252, 293
SnaBI TACGTA 1 cut(s) 60
SsiI CCGC 1 cut(s) 164
SspMI CTAG 1 cut(s) 231
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 289
TaiI ACGT 1 cut(s) 62
TaqI TCGA 2 cut(s) 123, 178
TaqII GACCGA 1 cut(s) 56
TfiI GAWTC 1 cut(s) 72
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TscAI CASTG 2 cut(s) 262, 427
TspDTI ATGAA 5 cut(s) 92, 407, 411, 463, 479
TspRI CASTG 2 cut(s) 262, 427
VpaK11BI GGWCC 2 cut(s) 252, 293
XmnI GAANNNNTTC 1 cut(s) 470
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.