Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007123

Physical Location & Seq

Genomic Coordinates Forward (+)

18374011 .. 18375541

Gene Structure 1531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCCTCTTTCACCAAAACACAAACTTAAACATAAAATTATCTATCACCCATATTTACATACAAAGATGGATCATCAAGAACCCACAACAGGCTTTCGTTTCTACCCAACTGAAGAAGAACTCGTCTCCTTCTACCTCCTCAACAAGCTCGAATCCAAGCGCCAAGGCAGCATTCGCCGCGTCATTCCCGACCTCGACATTTACAGCACAGAGCCATGGGATCTCCCAAGGTATGCTGCGGAGTTGTGCCGTGGAGACACCGAGCAGTGGTTCTTCTTTACGCCGAGGCAGCAACGAGAAGCGCAAGGAGGGAGACCTAACCGGACTACGGCTTCCGGCTACTGGAAGGCCACTGGCTCCCCGGGGTATGTTTACTCGTCGGATAATCGAGTCATTGGAGTGAAGAAGACGATGGTTTTCTACAAAGGGAAAGCTCCGACGGGAAGAAAGACCAAGTGGAAGATGAACGAGTACAGAGCCATTGAAGGAGCAGCAGCAGCTCCCTCAGCTGCTACCACTAGAAATAGCCCTGCTACTACTACTACTACCAATCCCAAGTTGAGGAATGAGTTCCGACTGTGTCGAGTGTACATAGTATCGGGGAGTTCTCGAGCTTTTGATAGACGCCCGCTGGAAGCAAGCGGCGACACATCACATCGACAAAGTGACAATTTACTGGGAGCAAGTACTTCTTCATCTCACCAAGCAACAATGGTGGCAGAAAAAACAAGTTCATCGTCTGATACTCATGGTTCAAATTCAGGAGACCTAGCTGATCTTCAAGCATCAGAGACTACTGATTGGGAAATGAATGATGATCTTGAACAACCTCTATGGGAATGGGAGCAGCTAAACTTACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

288

Amino Acids

32.57

Weight (kDa)

8.9

Isoelectric Point (pI)

49.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	30 - 159	3e-40	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44350 AT3G44350 AT5G22380
fragaria_vesca	FvH4_3g25470
malus_domestica	MD03G1148500.v1.1 MD11G1167900.v1.1
prunus_persica	Prupe.6G134400_v2.0.a1
pyrus_communis	pycom03g10280 pycom11g14010
rosa_chinensis	RchiOBHm_Chr5g0046601 RchiOBHm_Chr5g0046631
rosa_laevigata	RLG00000034423 RLG00000034425
rosa_multiflora	Rmu_sc0003878.1_g000003 Rmu_sc0003878.1_g000016
rosa_roxburghii	Rroxscaffold_1G00034720 Rroxscaffold_1G00034750
rosa_rugosa	Rorug05G0229900 Rorug05G0230200
rosa_samantha	Rh5AG310400 Rh5BG318600 Rh5CG344500 Rh5DG329100
rosa_wichuraiana	Rw5G028930 Rw5G028960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	180
AciI	CCGC	4 cut(s)	178, 239, 629, 642
AclWI	GGATC	2 cut(s)	78, 228
AcsI	RAATTY	1 cut(s)	757
AcuI	CTGAAG	1 cut(s)	132
AcyI	GRCGYC	1 cut(s)	625
AfaI	GTAC	3 cut(s)	473, 590, 688
AfiI	CCNNNNNNNGG	5 cut(s)	89, 267, 328, 342, 561
AgsI	TTSAA	4 cut(s)	485, 756, 782, 824
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	7 cut(s)	148, 434, 500, 509, 614, 773, 850
AluI	AGCT	7 cut(s)	148, 434, 500, 509, 614, 773, 850
Alw26I	GTCTC	5 cut(s)	130, 249, 307, 759, 785
AlwI	GGATC	2 cut(s)	78, 228
Ama87I	CYCGRG	2 cut(s)	361, 609
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	8 cut(s)	168, 236, 289, 491, 494, 497, 509, 847
ApoI	RAATTY	1 cut(s)	757
Asp700I	GAANNNNTTC	1 cut(s)	569
AspLEI	GCGC	2 cut(s)	162, 304
AsuC2I	CCSGG	2 cut(s)	362, 363
AsuHPI	GGTGA	3 cut(s)	3, 38, 692
AvaI	CYCGRG	2 cut(s)	361, 609
BbsI	GAAGAC	1 cut(s)	413
BbvCI	CCTCAGC	1 cut(s)	505
BbvI	GCAGC	8 cut(s)	180, 223, 301, 496, 503, 506, 509, 859
BccI	CCATC	2 cut(s)	61, 406
BceAI	ACGGC	2 cut(s)	234, 345
BcnI	CCSGG	2 cut(s)	362, 363
BcoDI	GTCTC	5 cut(s)	130, 249, 307, 759, 785
BfaI	CTAG	2 cut(s)	519, 770
BfoI	RGCGCY	1 cut(s)	163
BmcAI	AGTACT	1 cut(s)	688
Bme1390I	CCNGG	2 cut(s)	362, 363
BmeT110I	CYCGRG	2 cut(s)	361, 609
BmiI	GGNNCC	1 cut(s)	358
BmrFI	CCNGG	2 cut(s)	362, 363
BmrI	ACTGGG	1 cut(s)	686
BmsI	GCATC	1 cut(s)	794
BmuI	ACTGGG	1 cut(s)	686
BpiI	GAAGAC	1 cut(s)	413
Bpu10I	CCTNAGC	1 cut(s)	505
BpuMI	CCSGG	2 cut(s)	362, 363
BsaHI	GRCGYC	1 cut(s)	625
BsaI	GGTCTC	2 cut(s)	307, 759
BsaJI	CCNNGG	8 cut(s)	163, 215, 227, 250, 284, 360, 361, 362
BsaWI	WCCGGW	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	5 cut(s)	89, 267, 328, 342, 561
Bse1I	ACTGG	3 cut(s)	347, 358, 681
BseDI	CCNNGG	8 cut(s)	163, 215, 227, 250, 284, 360, 361, 362
BseLI	CCNNNNNNNGG	5 cut(s)	89, 267, 328, 342, 561
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	3 cut(s)	347, 358, 681
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	8 cut(s)	180, 223, 301, 496, 503, 506, 509, 859
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	350
BsiHKCI	CYCGRG	2 cut(s)	361, 609
BsiSI	CCGG	3 cut(s)	322, 336, 362
BslI	CCNNNNNNNGG	5 cut(s)	89, 267, 328, 342, 561
BsmAI	GTCTC	5 cut(s)	130, 249, 307, 759, 785
BsmBI	CGTCTC	1 cut(s)	130
BsmI	GAATGC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	350
Bso31I	GGTCTC	2 cut(s)	307, 759
BsoBI	CYCGRG	2 cut(s)	361, 609
Bsp1407I	TGTACA	1 cut(s)	588
Bsp143I	GATC	4 cut(s)	70, 220, 775, 817
Bsp19I	CCATGG	1 cut(s)	215
BspACI	CCGC	4 cut(s)	178, 239, 629, 642
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	1 cut(s)	518
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	358
BspPI	GGATC	2 cut(s)	78, 228
BspTNI	GGTCTC	2 cut(s)	307, 759
BsrGI	TGTACA	1 cut(s)	588
BsrI	ACTGG	3 cut(s)	347, 358, 681
BssECI	CCNNGG	8 cut(s)	163, 215, 227, 250, 284, 360, 361, 362
BssMI	GATC	4 cut(s)	70, 220, 775, 817
BssNI	GRCGYC	1 cut(s)	625
BssT1I	CCWWGG	3 cut(s)	163, 215, 227
Bst4CI	ACNGT	1 cut(s)	579
BstACI	GRCGYC	1 cut(s)	625
BstAUI	TGTACA	1 cut(s)	588
BstC8I	GCNNGC	2 cut(s)	629, 640
BstDEI	CTNAG	1 cut(s)	505
BstDSI	CCRYGG	2 cut(s)	215, 250
BstFNI	CGCG	1 cut(s)	180
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	2 cut(s)	162, 304
BstKTI	GATC	4 cut(s)	73, 223, 778, 820
BstMAI	GTCTC	5 cut(s)	130, 249, 307, 759, 785
BstMBI	GATC	4 cut(s)	70, 220, 775, 817
BstMWI	GCNNNNNNNGC	6 cut(s)	168, 174, 177, 289, 497, 506
BstSCI	CCNGG	2 cut(s)	360, 361
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	8 cut(s)	180, 223, 301, 496, 503, 506, 509, 859
BstV2I	GAAGAC	1 cut(s)	413
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	350
BtgI	CCRYGG	2 cut(s)	215, 250
BtsI	GCAGTG	1 cut(s)	272
BtsIMutI	CAGTG	2 cut(s)	272, 351
Cac8I	GCNNGC	2 cut(s)	629, 640
CfoI	GCGC	2 cut(s)	162, 304
Cfr9I	CCCGGG	1 cut(s)	361
CseI	GACGC	2 cut(s)	169, 633
Csp6I	GTAC	3 cut(s)	472, 589, 687
CspCI	CAANNNNNGTGG	2 cut(s)	696, 731
CviAII	CATG	2 cut(s)	216, 749
CviQI	GTAC	3 cut(s)	472, 589, 687
DdeI	CTNAG	1 cut(s)	505
DpnI	GATC	4 cut(s)	72, 222, 777, 819
DpnII	GATC	4 cut(s)	70, 220, 775, 817
Eco130I	CCWWGG	3 cut(s)	163, 215, 227
Eco31I	GGTCTC	2 cut(s)	307, 759
Eco57I	CTGAAG	1 cut(s)	132
Eco88I	CYCGRG	2 cut(s)	361, 609
EcoT14I	CCWWGG	3 cut(s)	163, 215, 227
ErhI	CCWWGG	3 cut(s)	163, 215, 227
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	2 cut(s)	219, 752
FaiI	YATR	9 cut(s)	33, 52, 60, 217, 234, 369, 593, 750, 835
FalI	AAGNNNNNCTT	2 cut(s)	676, 708
FatI	CATG	2 cut(s)	215, 748
FauI	CCCGC	1 cut(s)	636
FspBI	CTAG	2 cut(s)	519, 770
GlaI	GCGC	2 cut(s)	161, 303
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	3 cut(s)	322, 336, 362
HgaI	GACGC	2 cut(s)	169, 633
HhaI	GCGC	2 cut(s)	162, 304
Hin1I	GRCGYC	1 cut(s)	625
Hin1II	CATG	2 cut(s)	219, 752
Hin6I	GCGC	2 cut(s)	160, 302
HinP1I	GCGC	2 cut(s)	160, 302
HinfI	GANTC	2 cut(s)	152, 390
HpaII	CCGG	3 cut(s)	322, 336, 362
HphI	GGTGA	3 cut(s)	3, 38, 692
Hpy166II	GTNNAC	2 cut(s)	373, 589
Hpy188I	TCNGA	5 cut(s)	382, 438, 575, 742, 790
Hpy188III	TCNNGA	5 cut(s)	77, 188, 609, 762, 821
Hpy8I	GTNNAC	2 cut(s)	373, 589
Hpy99I	CGWCG	2 cut(s)	382, 442
HpyAV	CCTTC	3 cut(s)	139, 340, 479
HpyCH4III	ACNGT	1 cut(s)	579
HpyF10VI	GCNNNNNNNGC	6 cut(s)	168, 174, 177, 289, 497, 506
HpyF3I	CTNAG	1 cut(s)	505
Hsp92I	GRCGYC	1 cut(s)	625
Hsp92II	CATG	2 cut(s)	219, 752
HspAI	GCGC	2 cut(s)	160, 302
Kzo9I	GATC	4 cut(s)	70, 220, 775, 817
LmnI	GCTCC	6 cut(s)	362, 439, 488, 505, 680, 844
Lsp1109I	GCAGC	8 cut(s)	180, 223, 301, 496, 503, 506, 509, 859
LweI	GCATC	1 cut(s)	794
MaeI	CTAG	2 cut(s)	519, 770
MaeIII	GTNAC	1 cut(s)	665
MalI	GATC	4 cut(s)	72, 222, 777, 819
MboI	GATC	4 cut(s)	70, 220, 775, 817
MboII	GAAGA	9 cut(s)	125, 128, 265, 415, 418, 456, 472, 684, 770
MflI	RGATCY	1 cut(s)	220
MluCI	AATT	3 cut(s)	36, 670, 757
MlyI	GAGTC	1 cut(s)	399
MmeI	TCCRAC	3 cut(s)	360, 461, 598
MnlI	CCTC	9 cut(s)	15, 146, 149, 203, 279, 302, 514, 555, 840
MroXI	GAANNNNTTC	1 cut(s)	569
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	2 cut(s)	509, 631
MspI	CCGG	3 cut(s)	322, 336, 362
MspR9I	CCNGG	2 cut(s)	362, 363
Mva1269I	GAATGC	1 cut(s)	171
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	6 cut(s)	168, 174, 177, 289, 497, 506
NciI	CCSGG	2 cut(s)	362, 363
NcoI	CCATGG	1 cut(s)	215
NdeII	GATC	4 cut(s)	70, 220, 775, 817
NlaIII	CATG	2 cut(s)	219, 752
NlaIV	GGNNCC	1 cut(s)	358
NmeAIII	GCCGAG	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	665
PaeR7I	CTCGAG	1 cut(s)	609
PctI	GAATGC	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	569
PfeI	GAWTC	1 cut(s)	152
PflFI	GACNNNGTC	1 cut(s)	579
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
PspN4I	GGNNCC	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	220
PsyI	GACNNNGTC	1 cut(s)	579
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	3 cut(s)	473, 590, 688
RsaNI	GTAC	3 cut(s)	472, 589, 687
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	27
Sau3AI	GATC	4 cut(s)	70, 220, 775, 817
ScaI	AGTACT	1 cut(s)	688
SchI	GAGTC	1 cut(s)	399
ScrFI	CCNGG	2 cut(s)	362, 363
SfaNI	GCATC	1 cut(s)	794
Sfr274I	CTCGAG	1 cut(s)	609
SlaI	CTCGAG	1 cut(s)	609
SmaI	CCCGGG	1 cut(s)	363
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	609
SmoI	CTYRAG	1 cut(s)	609
Sse9I	AATT	3 cut(s)	36, 670, 757
SsiI	CCGC	4 cut(s)	178, 239, 629, 642
SspMI	CTAG	2 cut(s)	519, 770
StyD4I	CCNGG	2 cut(s)	360, 361
StyI	CCWWGG	3 cut(s)	163, 215, 227
TaaI	ACNGT	1 cut(s)	579
TaqI	TCGA	6 cut(s)	150, 195, 388, 583, 610, 658
TasI	AATT	3 cut(s)	36, 670, 757
TatI	WGTACW	3 cut(s)	471, 588, 686
TauI	GCSGC	2 cut(s)	180, 645
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	2 cut(s)	272, 358
TseFI	GTSAC	1 cut(s)	665
TseI	GCWGC	8 cut(s)	168, 236, 289, 491, 494, 497, 509, 847
Tsp45I	GTSAC	1 cut(s)	665
TspDTI	ATGAA	4 cut(s)	479, 684, 723, 824
TspMI	CCCGGG	1 cut(s)	361
TspRI	CASTG	2 cut(s)	272, 358
Tth111I	GACNNNGTC	1 cut(s)	579
XapI	RAATTY	1 cut(s)	757
XhoI	CTCGAG	1 cut(s)	609
XmaI	CCCGGG	1 cut(s)	361
XmnI	GAANNNNTTC	1 cut(s)	569
XspI	CTAG	2 cut(s)	519, 770
ZrmI	AGTACT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.