Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007123

Physical Location & Seq

Genomic Coordinates Forward (+)

10621079 .. 10622787

Gene Structure 1709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G134400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGAGGAGCTGCCACCAGGTTACCGCTTCTACCCGACAGAAGAAGAACTGGTCTCCTTCTACCTCCTTAACAAACTCGAAGGGAAGCGAGACGATACTCGTCGCGTAATCCCAGTCGTAGACATTTACAGCAAAGAGCCATGGGACCTTCCAAAGTTTTCAGGGGAGTTGTGCCATGGAGACACAGAGCAATGGTTTTTCTTCACACCAAGACAACAAAGAGAAGCCCAAGGAGGAAGGCCCAACAGGACCACAGCTTCTGGGTACTGGAAGGCCACAGGCTCTCCTGGGTATGTTTACTCCTCAGATAACAAGGTCATTGGAGTGAAGAAAACCATGGTTTTCTATAAAGGCAAAGCTCCAACTGGACGGAAAACCAAATGGAAGATGAATGAGTACAGAGCCATTGAAGCAGATAACCCAACTACCACTAGCACTAGTGTCCCCAAGTACTTGAGGAATGAATTCAGATTGTGCCGGGTGTACGTGGTATCTGGGAGTTGTCGAGCATTTGACAGACGACCATTAGAAGGAAGTGGAGAGACGAAGCATCAATTGAGTGAGTCTATGGGTGGAACAAGCACCTTTTCTCTGAAGGCTCCAATGGTGGAGAAAGCAAGCTCATCGGATGAAACTTTTTCATATTCAGAAGAGCTTGCTGATCTCCCAGAGACGTATGCAGGGATTAACAGTACTAATTGGGAGATTATTGAAGGTCTTGAACAACCTCTATGGGAATGGGAACAATTAAATTTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

254

Amino Acids

29.0

Weight (kDa)

5.67

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44350 AT3G44350 AT5G22380
fragaria_vesca	FvH4_3g25470
malus_domestica	MD03G1148500.v1.1 MD11G1167900.v1.1
prunus_persica	Prupe.6G134400_v2.0.a1
pyrus_communis	pycom03g10280 pycom11g14010
rosa_chinensis	RchiOBHm_Chr5g0046601 RchiOBHm_Chr5g0046631
rosa_laevigata	RLG00000034423 RLG00000034425
rosa_multiflora	Rmu_sc0003878.1_g000003 Rmu_sc0003878.1_g000016
rosa_roxburghii	Rroxscaffold_1G00034720 Rroxscaffold_1G00034750
rosa_rugosa	Rorug05G0229900 Rorug05G0230200
rosa_samantha	Rh5AG310400 Rh5BG318600 Rh5CG344500 Rh5DG329100
rosa_wichuraiana	Rw5G028930 Rw5G028960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	1 cut(s)	105
AciI	CCGC	1 cut(s)	25
AcsI	RAATTY	2 cut(s)	464, 751
AcuI	CTGAAG	1 cut(s)	614
AfaI	GTAC	5 cut(s)	266, 398, 452, 485, 694
AfiI	CCNNNNNNNGG	1 cut(s)	530
AgsI	TTSAA	3 cut(s)	410, 713, 722
AhlI	ACTAGT	1 cut(s)	437
AjnI	CCWGG	2 cut(s)	16, 286
AluBI	AGCT	5 cut(s)	10, 257, 359, 621, 655
AluI	AGCT	5 cut(s)	10, 257, 359, 621, 655
Alw26I	GTCTC	5 cut(s)	58, 84, 174, 536, 665
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	2 cut(s)	239, 273
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	2 cut(s)	464, 751
Asp700I	GAANNNNTTC	1 cut(s)	464
AspS9I	GGNCC	3 cut(s)	145, 240, 249
AsuC2I	CCSGG	1 cut(s)	479
AvaII	GGWCC	2 cut(s)	145, 249
BcgI	CGANNNNNNTGC	2 cut(s)	606, 640
BciT130I	CCWGG	2 cut(s)	18, 288
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	5 cut(s)	58, 84, 174, 536, 665
BcuI	ACTAGT	1 cut(s)	437
BfaI	CTAG	2 cut(s)	432, 438
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
BmcAI	AGTACT	2 cut(s)	452, 694
Bme1390I	CCNGG	3 cut(s)	18, 288, 479
Bme18I	GGWCC	2 cut(s)	145, 249
BmgT120I	GGNCC	3 cut(s)	145, 240, 249
BmiI	GGNNCC	2 cut(s)	146, 600
BmrFI	CCNGG	3 cut(s)	18, 288, 479
BmrI	ACTGGG	1 cut(s)	107
BmsI	GCATC	1 cut(s)	559
BmuI	ACTGGG	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	479
BsaAI	YACGTR	1 cut(s)	487
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	5 cut(s)	140, 175, 229, 287, 336
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	530
Bse1I	ACTGG	4 cut(s)	54, 113, 272, 370
Bse3DI	GCAATG	1 cut(s)	197
BseBI	CCWGG	2 cut(s)	18, 288
BseDI	CCNNGG	5 cut(s)	140, 175, 229, 287, 336
BseGI	GGATG	1 cut(s)	634
BseLI	CCNNNNNNNGG	1 cut(s)	530
BseMI	GCAATG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	4 cut(s)	54, 113, 272, 370
BseRI	GAGGAG	2 cut(s)	20, 292
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	2 cut(s)	241, 275
BsiSI	CCGG	1 cut(s)	478
BslFI	GGGAC	2 cut(s)	158, 428
BslI	CCNNNNNNNGG	1 cut(s)	530
BsmAI	GTCTC	5 cut(s)	58, 84, 174, 536, 665
BsmBI	CGTCTC	3 cut(s)	84, 536, 665
BsmFI	GGGAC	2 cut(s)	158, 428
BsnI	GGCC	2 cut(s)	241, 275
Bso31I	GGTCTC	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	661
Bsp19I	CCATGG	3 cut(s)	140, 175, 336
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	2 cut(s)	241, 275
BspCNI	CTCAG	1 cut(s)	317
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	2 cut(s)	146, 600
BspQI	GCTCTTC	1 cut(s)	645
BspTNI	GGTCTC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	197
BsrI	ACTGG	4 cut(s)	54, 113, 272, 370
BssECI	CCNNGG	5 cut(s)	140, 175, 229, 287, 336
BssMI	GATC	1 cut(s)	661
BssT1I	CCWWGG	4 cut(s)	140, 175, 229, 336
Bst2UI	CCWGG	2 cut(s)	18, 288
Bst4CI	ACNGT	1 cut(s)	692
Bst6I	CTCTTC	1 cut(s)	645
BstBAI	YACGTR	1 cut(s)	487
BstC8I	GCNNGC	2 cut(s)	619, 657
BstDEI	CTNAG	1 cut(s)	304
BstDSI	CCRYGG	3 cut(s)	140, 175, 336
BstEII	GGTNACC	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	634
BstFNI	CGCG	1 cut(s)	105
BstKTI	GATC	1 cut(s)	664
BstMAI	GTCTC	5 cut(s)	58, 84, 174, 536, 665
BstMBI	GATC	1 cut(s)	661
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	2 cut(s)	18, 288
BstPI	GGTNACC	1 cut(s)	20
BstSCI	CCNGG	3 cut(s)	16, 286, 477
BstUI	CGCG	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	241, 275
BtgI	CCRYGG	3 cut(s)	140, 175, 336
BtsCI	GGATG	1 cut(s)	634
Cac8I	GCNNGC	2 cut(s)	619, 657
CaiI	CAGNNNCTG	1 cut(s)	260
Cfr13I	GGNCC	3 cut(s)	145, 240, 249
CsiI	ACCWGGT	1 cut(s)	16
Csp6I	GTAC	5 cut(s)	265, 397, 451, 484, 693
CviAII	CATG	3 cut(s)	141, 176, 337
CviQI	GTAC	5 cut(s)	265, 397, 451, 484, 693
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	1 cut(s)	663
DpnII	GATC	1 cut(s)	661
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
Eco130I	CCWWGG	4 cut(s)	140, 175, 229, 336
Eco31I	GGTCTC	1 cut(s)	58
Eco47I	GGWCC	2 cut(s)	145, 249
Eco57I	CTGAAG	1 cut(s)	614
Eco91I	GGTNACC	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	145
EcoO65I	GGTNACC	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	464
EcoRII	CCWGG	2 cut(s)	16, 286
EcoT14I	CCWWGG	4 cut(s)	140, 175, 229, 336
ErhI	CCWWGG	4 cut(s)	140, 175, 229, 336
Esp3I	CGTCTC	3 cut(s)	84, 536, 665
FaeI	CATG	3 cut(s)	144, 179, 340
FaiI	YATR	9 cut(s)	142, 177, 294, 338, 348, 569, 643, 678, 733
FaqI	GGGAC	2 cut(s)	158, 428
FatI	CATG	3 cut(s)	140, 175, 336
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	1 cut(s)	641
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	2 cut(s)	432, 438
GluI	GCNGC	1 cut(s)	11
HaeIII	GGCC	2 cut(s)	241, 275
HapII	CCGG	1 cut(s)	478
Hin1II	CATG	3 cut(s)	144, 179, 340
HinfI	GANTC	1 cut(s)	563
HpaII	CCGG	1 cut(s)	478
Hpy166II	GTNNAC	3 cut(s)	121, 298, 484
Hpy188I	TCNGA	5 cut(s)	307, 470, 594, 628, 649
Hpy188III	TCNNGA	1 cut(s)	719
Hpy8I	GTNNAC	3 cut(s)	121, 298, 484
Hpy99I	CGWCG	1 cut(s)	105
HpyAV	CCTTC	8 cut(s)	67, 74, 158, 231, 265, 524, 589, 707
HpyCH4III	ACNGT	1 cut(s)	692
HpyCH4IV	ACGT	2 cut(s)	486, 674
HpyCH4V	TGCA	1 cut(s)	680
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	1 cut(s)	304
HpySE526I	ACGT	2 cut(s)	486, 674
Hsp92II	CATG	3 cut(s)	144, 179, 340
Kzo9I	GATC	1 cut(s)	661
LguI	GCTCTTC	1 cut(s)	645
LmnI	GCTCC	3 cut(s)	7, 364, 604
LweI	GCATC	1 cut(s)	559
MabI	ACCWGGT	1 cut(s)	16
MaeI	CTAG	2 cut(s)	432, 438
MaeII	ACGT	2 cut(s)	486, 674
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	1 cut(s)	663
MboI	GATC	1 cut(s)	661
MboII	GAAGA	6 cut(s)	53, 56, 193, 340, 397, 662
MfeI	CAATTG	1 cut(s)	554
MluCI	AATT	5 cut(s)	464, 554, 697, 746, 751
MlyI	GAGTC	1 cut(s)	572
MmeI	TCCRAC	1 cut(s)	386
MnlI	CCTC	5 cut(s)	74, 227, 313, 450, 738
MroXI	GAANNNNTTC	1 cut(s)	464
MseI	TTAA	4 cut(s)	69, 687, 749, 760
MslI	CAYNNNNRTG	1 cut(s)	323
MspI	CCGG	1 cut(s)	478
MspR9I	CCNGG	3 cut(s)	18, 288, 479
MunI	CAATTG	1 cut(s)	554
MvaI	CCWGG	2 cut(s)	18, 288
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	410
NciI	CCSGG	1 cut(s)	479
NcoI	CCATGG	3 cut(s)	140, 175, 336
NdeII	GATC	1 cut(s)	661
NlaIII	CATG	3 cut(s)	144, 179, 340
NlaIV	GGNNCC	2 cut(s)	146, 600
PciSI	GCTCTTC	1 cut(s)	645
PdmI	GAANNNNTTC	1 cut(s)	464
PkrI	GCNGC	1 cut(s)	12
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
Ppu21I	YACGTR	1 cut(s)	487
PpuMI	RGGWCCY	1 cut(s)	145
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	2 cut(s)	16, 286
PspEI	GGTNACC	1 cut(s)	20
PspGI	CCWGG	2 cut(s)	16, 286
PspN4I	GGNNCC	2 cut(s)	146, 600
PspPI	GGNCC	3 cut(s)	145, 240, 249
PspPPI	RGGWCCY	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	260
RsaI	GTAC	5 cut(s)	266, 398, 452, 485, 694
RsaNI	GTAC	5 cut(s)	265, 397, 451, 484, 693
RseI	CAYNNNNRTG	1 cut(s)	323
SapI	GCTCTTC	1 cut(s)	645
SaqAI	TTAA	4 cut(s)	69, 687, 749, 760
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	661
Sau96I	GGNCC	3 cut(s)	145, 240, 249
ScaI	AGTACT	2 cut(s)	452, 694
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	3 cut(s)	18, 288, 479
SexAI	ACCWGGT	1 cut(s)	16
SfaNI	GCATC	1 cut(s)	559
SinI	GGWCC	2 cut(s)	145, 249
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
SpeI	ACTAGT	1 cut(s)	437
Sse9I	AATT	5 cut(s)	464, 554, 697, 746, 751
SsiI	CCGC	1 cut(s)	25
SspMI	CTAG	2 cut(s)	432, 438
StyD4I	CCNGG	3 cut(s)	16, 286, 477
StyI	CCWWGG	4 cut(s)	140, 175, 229, 336
TaaI	ACNGT	1 cut(s)	692
TaiI	ACGT	2 cut(s)	489, 677
TaqI	TCGA	2 cut(s)	78, 505
TasI	AATT	5 cut(s)	464, 554, 697, 746, 751
TatI	WGTACW	3 cut(s)	396, 450, 692
Tru1I	TTAA	4 cut(s)	69, 687, 749, 760
Tru9I	TTAA	4 cut(s)	69, 687, 749, 760
TseI	GCWGC	1 cut(s)	10
TspDTI	ATGAA	4 cut(s)	404, 477, 630, 645
TspGWI	ACGGA	1 cut(s)	385
VpaK11BI	GGWCC	2 cut(s)	145, 249
XapI	RAATTY	2 cut(s)	464, 751
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	464
XspI	CTAG	2 cut(s)	432, 438
ZrmI	AGTACT	2 cut(s)	452, 694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.