AT5G22380
NAC Family

NAC domain containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007123
Physical Location & Seq
Reverse (-)
7408759 .. 7410102
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G22380.1

Sequence Viewer

Length: 708 bp
ATGGCCGATGAGGTCACAATCGGGTTTCGCTTCTATCCCACGGAAGAAGAACTGGTTTCGTTCTACCTACGAAACCAGCTCGAAGGAAGGAGTGATGACTCAATGCATCGTGTCATTCCCGTACTTGACGTCTTTGAGGTCGAGCCTAGTCATCTTCCAAATGTTGCTGGAGTGAGATGTCGAGGAGACGCTGAGCAATGGTTCTTCTTCGTGCCACGACAAGAACGCGAAGCAAGAGGAGGCAGACCGAGTAGAACTACTGGTTCAGGATACTGGAAAGCAACTGGATCACCTGGTCCAGTCTTTTCCAAAGACAACAAAATGATTGGAGCAAAGAAAACTATGGTTTTCTACACTGGAAAAGCACCCACAGGAAGAAAAACTAAATGGAAAATGAATGAGTACCACGCCGTTGACGAAACAGTCAACGCTTCCACAATCCCTAAGCTGAGACGTGAGTTCAGTTTATGTCGAGTCTACATAACAACAGGAAGCTCCAGAGCTTTTGATAGACGTCCTGAGGGAGTTTTGCAGACAGAGAGAATGCTAACAAGTGATGTTGCAGTAGCTGAGACATCGTTCCGTGTGGAAAGCTCACTGGAAACTTCGATTTCAGGAGGAGAACATATTGATGTCTCTATGAACACAGAGTTTGTTGATGGACTATCAGAACCGATGTGGGACTGGGAACAGCTGACTTGGCCTTGA

Protein Analysis

235

Amino Acids

26.72

Weight (kDa)

5.7

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 136 2e-36 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 422
AatII GACGTC 2 cut(s) 132, 517
AccI GTMKAC 1 cut(s) 477
AccII CGCG 1 cut(s) 228
AclWI GGATC 1 cut(s) 295
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 2 cut(s) 129, 514
AfaI GTAC 2 cut(s) 123, 404
AjiI CACGTC 1 cut(s) 455
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 7 cut(s) 79, 448, 495, 503, 569, 594, 694
AluI AGCT 7 cut(s) 79, 448, 495, 503, 569, 594, 694
Alw26I GTCTC 4 cut(s) 180, 445, 566, 640
AlwI GGATC 1 cut(s) 295
AlwNI CAGNNNCTG 1 cut(s) 569
AoxI GGCC 2 cut(s) 3, 701
AspS9I GGNCC 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 282
AvaII GGWCC 1 cut(s) 296
AxyI CCTNAGG 1 cut(s) 519
BccI CCATC 1 cut(s) 653
BceAI ACGGC 1 cut(s) 395
BciT130I CCWGG 1 cut(s) 294
BciVI GTATCC 1 cut(s) 263
BcoDI GTCTC 4 cut(s) 180, 445, 566, 640
BfaI CTAG 1 cut(s) 147
BfuI GTATCC 1 cut(s) 263
BlpI GCTNAGC 1 cut(s) 192
Bme1390I CCNGG 1 cut(s) 294
Bme18I GGWCC 1 cut(s) 296
BmgBI CACGTC 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 296
BmrFI CCNGG 1 cut(s) 294
BmrI ACTGGG 1 cut(s) 694
BmsI GCATC 1 cut(s) 115
BmuI ACTGGG 1 cut(s) 694
BpmI CTGGAG 2 cut(s) 189, 481
Bpu10I CCTNAGC 1 cut(s) 444
Bpu1102I GCTNAGC 1 cut(s) 192
BsaHI GRCGYC 2 cut(s) 129, 514
BsaJI CCNNGG 1 cut(s) 39
Bse1I ACTGG 8 cut(s) 57, 265, 278, 289, 299, 361, 603, 689
Bse21I CCTNAGG 1 cut(s) 519
Bse3DI GCAATG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 39
BseMI GCAATG 1 cut(s) 203
BseMII CTCAG 4 cut(s) 183, 440, 510, 561
BseNI ACTGG 8 cut(s) 57, 265, 278, 289, 299, 361, 603, 689
BseRI GAGGAG 3 cut(s) 198, 252, 633
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 2 cut(s) 5, 703
BslFI GGGAC 1 cut(s) 695
BsmAI GTCTC 4 cut(s) 180, 445, 566, 640
BsmBI CGTCTC 2 cut(s) 180, 445
BsmFI GGGAC 1 cut(s) 695
BsmI GAATGC 1 cut(s) 549
BsnI GGCC 2 cut(s) 5, 703
Bsp143I GATC 1 cut(s) 287
Bsp1720I GCTNAGC 1 cut(s) 192
BspANI GGCC 2 cut(s) 5, 703
BspCNI CTCAG 4 cut(s) 184, 441, 511, 562
BspFNI CGCG 1 cut(s) 228
BspPI GGATC 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 203
BsrI ACTGG 8 cut(s) 57, 265, 278, 289, 299, 361, 603, 689
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 1 cut(s) 287
BssNI GRCGYC 2 cut(s) 129, 514
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 424
BstACI GRCGYC 2 cut(s) 129, 514
BstDEI CTNAG 5 cut(s) 192, 444, 449, 519, 570
BstDSI CCRYGG 1 cut(s) 39
BstFNI CGCG 1 cut(s) 228
BstKTI GATC 1 cut(s) 290
BstMAI GTCTC 4 cut(s) 180, 445, 566, 640
BstMBI GATC 1 cut(s) 287
BstMWI GCNNNNNNNGC 1 cut(s) 700
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 292
BstUI CGCG 1 cut(s) 228
Bsu36I CCTNAGG 1 cut(s) 519
BsuI GTATCC 1 cut(s) 263
BsuRI GGCC 2 cut(s) 5, 703
BtgI CCRYGG 1 cut(s) 39
BtrI CACGTC 1 cut(s) 455
BtsIMutI CAGTG 2 cut(s) 354, 596
CaiI CAGNNNCTG 1 cut(s) 569
Cfr13I GGNCC 1 cut(s) 296
CseI GACGC 1 cut(s) 197
CsiI ACCWGGT 1 cut(s) 292
Csp6I GTAC 2 cut(s) 122, 403
CviQI GTAC 2 cut(s) 122, 403
DdeI CTNAG 5 cut(s) 192, 444, 449, 519, 570
DpnI GATC 1 cut(s) 289
DpnII GATC 1 cut(s) 287
DrdI GACNNNNNNGTC 1 cut(s) 422
DseDI GACNNNNNNGTC 1 cut(s) 422
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 296
Eco81I CCTNAGG 1 cut(s) 519
EcoRII CCWGG 1 cut(s) 292
EcoT22I ATGCAT 1 cut(s) 108
Esp3I CGTCTC 2 cut(s) 180, 445
FaiI YATR 5 cut(s) 344, 469, 482, 627, 641
FaqI GGGAC 1 cut(s) 695
FblI GTMKAC 1 cut(s) 477
FspBI CTAG 1 cut(s) 147
GsuI CTGGAG 2 cut(s) 189, 481
HaeIII GGCC 2 cut(s) 5, 703
HgaI GACGC 1 cut(s) 197
Hin1I GRCGYC 2 cut(s) 129, 514
HincII GTYRAC 2 cut(s) 415, 427
HindII GTYRAC 2 cut(s) 415, 427
HinfI GANTC 2 cut(s) 98, 474
HphI GGTGA 1 cut(s) 282
Hpy166II GTNNAC 3 cut(s) 415, 427, 478
Hpy188I TCNGA 1 cut(s) 670
Hpy188III TCNNGA 4 cut(s) 267, 498, 518, 615
Hpy8I GTNNAC 3 cut(s) 415, 427, 478
HpyAV CCTTC 2 cut(s) 77, 81
HpyCH4III ACNGT 1 cut(s) 424
HpyCH4IV ACGT 3 cut(s) 129, 454, 514
HpyCH4V TGCA 3 cut(s) 106, 532, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 700
HpyF3I CTNAG 5 cut(s) 192, 444, 449, 519, 570
HpySE526I ACGT 3 cut(s) 129, 454, 514
Hsp92I GRCGYC 2 cut(s) 129, 514
Kzo9I GATC 1 cut(s) 287
LmnI GCTCC 2 cut(s) 329, 500
LweI GCATC 1 cut(s) 115
MabI ACCWGGT 1 cut(s) 292
MaeI CTAG 1 cut(s) 147
MaeII ACGT 3 cut(s) 129, 454, 514
MaeIII GTNAC 1 cut(s) 13
MalI GATC 1 cut(s) 289
MboI GATC 1 cut(s) 287
MboII GAAGA 6 cut(s) 56, 59, 146, 196, 199, 387
MlyI GAGTC 2 cut(s) 92, 483
MnlI CCTC 7 cut(s) 4, 130, 176, 230, 233, 514, 611
Mph1103I ATGCAT 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 630
MspA1I CMGCKG 1 cut(s) 694
MspR9I CCNGG 1 cut(s) 294
Mva1269I GAATGC 1 cut(s) 549
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 700
NdeII GATC 1 cut(s) 287
NmuCI GTSAC 1 cut(s) 13
NsiI ATGCAT 1 cut(s) 108
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PctI GAATGC 1 cut(s) 549
PleI GAGTC 2 cut(s) 92, 482
PpsI GAGTC 2 cut(s) 92, 482
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspPI GGNCC 1 cut(s) 296
PstNI CAGNNNCTG 1 cut(s) 569
PvuII CAGCTG 1 cut(s) 694
RsaI GTAC 2 cut(s) 123, 404
RsaNI GTAC 2 cut(s) 122, 403
RseI CAYNNNNRTG 1 cut(s) 630
Sau3AI GATC 1 cut(s) 287
Sau96I GGNCC 1 cut(s) 296
SchI GAGTC 2 cut(s) 92, 483
ScrFI CCNGG 1 cut(s) 294
SexAI ACCWGGT 1 cut(s) 292
SfaNI GCATC 1 cut(s) 115
SinI GGWCC 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 630
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 292
TaaI ACNGT 1 cut(s) 424
TaiI ACGT 3 cut(s) 132, 457, 517
TaqI TCGA 5 cut(s) 81, 141, 181, 472, 608
TaqII GACCGA 1 cut(s) 262
TscAI CASTG 2 cut(s) 361, 603
TseFI GTSAC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 2 cut(s) 410, 656
TspGWI ACGGA 2 cut(s) 56, 572
TspRI CASTG 2 cut(s) 361, 603
VpaK11BI GGWCC 1 cut(s) 296
XmiI GTMKAC 1 cut(s) 477
XspI CTAG 1 cut(s) 147
ZraI GACGTC 2 cut(s) 130, 515
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.