pycom11g14010
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0007123
Physical Location & Seq
Forward (+)
13809743 .. 13810850
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g14010.1

Sequence Viewer

Length: 747 bp
ATGGAGGAGCTGCTACCAGGTTATCGCTTCTATCCAACAGAAGAAGAACTGGTCTCCTTCTATCTGCATAACAAGCTCCAAGGGAAGCGAGAAGATACTTGCCGCGTAATCCCCACTGTAGACATTTACAGCAAAGAGCCTTGGGACCTTCCAAAGTCATCGGGGGAGTTGTGCCGTGGAGACAAAGAGCAATGGTTTTTCTTTACGCCGAGGCAACAACGAGAAGCTCAAGGAGGGAGGCCCAACAGGACTACTGGCTCTGGGTACTGGAAGGCCACCGGCTCACCTGGCTACGTTTACTCTTCAGATAACAAGGTGATTGGAGTGAAGAAAACCATGGTTTTCTATAAAGGCAAAGCTCCAACTGGAAGAAAAACCAAATGGAAGATGAATGAGTATAGAGCCATTGAAGTAGACAACTCAACTACCAATACACCCAAGTTGGGGCATGAATTCAAATTGTGTCGAGTGTACGTGGTATCTGGGAGTTCTCGAGCATTTGACAGACGGCCATTGGATCCAGTCGGAGAGGCACAACAAAAATTTAGTGACTCTACAGGAGCAAGTACTTCTTCTTTGAAGACTACAATGATGGAGAAAGCAAGCGCATCAGATGAAACTTATTCACATTCAGGAGAGCTTGGTGATCTCCCGGAGACGTCAGCAGGGATTAATAGTAGTAACTGGGAGATTAATGAAGGTTTTGAAGAACCTCTATGGGAATGGGAACAACTAAATTTTCTCTAA

Protein Analysis

249

Amino Acids

28.22

Weight (kDa)

6.04

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 6 - 134 7.3e-42 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 662
AccI GTMKAC 2 cut(s) 120, 414
AccII CGCG 1 cut(s) 105
AciI CCGC 1 cut(s) 103
AclWI GGATC 2 cut(s) 512, 525
AcoI YGGCCR 1 cut(s) 509
AcsI RAATTY 3 cut(s) 452, 542, 736
AcuI CTGAAG 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 659
AfaI GTAC 3 cut(s) 266, 473, 568
AfiI CCNNNNNNNGG 2 cut(s) 443, 444
AgsI TTSAA 4 cut(s) 410, 457, 580, 707
AjnI CCWGG 2 cut(s) 16, 286
AluBI AGCT 5 cut(s) 10, 76, 227, 359, 640
AluI AGCT 5 cut(s) 10, 76, 227, 359, 640
Alw26I GTCTC 3 cut(s) 58, 174, 650
AlwI GGATC 2 cut(s) 512, 525
Ama87I CYCGRG 1 cut(s) 492
AoxI GGCC 3 cut(s) 239, 273, 509
ApeKI GCWGC 1 cut(s) 10
ApoI RAATTY 3 cut(s) 452, 542, 736
AseI ATTAAT 2 cut(s) 672, 693
AspLEI GCGC 1 cut(s) 608
AspS9I GGNCC 2 cut(s) 145, 240
AsuC2I CCSGG 1 cut(s) 653
AsuHPI GGTGA 3 cut(s) 276, 328, 656
AvaI CYCGRG 1 cut(s) 492
AvaII GGWCC 1 cut(s) 145
BamHI GGATCC 1 cut(s) 517
BbsI GAAGAC 1 cut(s) 587
BccI CCATC 1 cut(s) 586
BceAI ACGGC 2 cut(s) 159, 524
BciT130I CCWGG 2 cut(s) 18, 288
BcnI CCSGG 1 cut(s) 653
BcoDI GTCTC 3 cut(s) 58, 174, 650
BfmI CTRYAG 2 cut(s) 117, 555
BisI GCNGC 2 cut(s) 11, 103
BlsI GCNGC 2 cut(s) 12, 104
BmcAI AGTACT 1 cut(s) 568
Bme1390I CCNGG 3 cut(s) 18, 288, 653
Bme18I GGWCC 1 cut(s) 145
BmeT110I CYCGRG 1 cut(s) 492
BmgT120I GGNCC 2 cut(s) 145, 240
BmiI GGNNCC 2 cut(s) 146, 519
BmrFI CCNGG 3 cut(s) 18, 288, 653
BmrI ACTGGG 1 cut(s) 694
BmsI GCATC 1 cut(s) 617
BmuI ACTGGG 1 cut(s) 694
BpiI GAAGAC 1 cut(s) 587
BpuEI CTTGAG 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 653
BsaAI YACGTR 1 cut(s) 475
BsaHI GRCGYC 1 cut(s) 659
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 5 cut(s) 79, 140, 175, 209, 336
Bsc4I CCNNNNNNNGG 2 cut(s) 443, 444
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 6 cut(s) 54, 259, 272, 370, 521, 689
Bse3DI GCAATG 1 cut(s) 197
BseBI CCWGG 2 cut(s) 18, 288
BseDI CCNNGG 5 cut(s) 79, 140, 175, 209, 336
BseLI CCNNNNNNNGG 2 cut(s) 443, 444
BseMI GCAATG 1 cut(s) 197
BseNI ACTGG 6 cut(s) 54, 259, 272, 370, 521, 689
BseRI GAGGAG 1 cut(s) 20
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 3 cut(s) 241, 275, 511
BsiHKCI CYCGRG 1 cut(s) 492
BsiSI CCGG 2 cut(s) 279, 653
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 2 cut(s) 443, 444
BsmAI GTCTC 3 cut(s) 58, 174, 650
BsmBI CGTCTC 1 cut(s) 650
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 3 cut(s) 241, 275, 511
Bso31I GGTCTC 1 cut(s) 58
BsoBI CYCGRG 1 cut(s) 492
Bsp143I GATC 2 cut(s) 517, 646
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 1 cut(s) 103
BspANI GGCC 3 cut(s) 241, 275, 511
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 146, 519
BspPI GGATC 2 cut(s) 512, 525
BspTNI GGTCTC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 278
BsrI ACTGG 6 cut(s) 54, 259, 272, 370, 521, 689
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 5 cut(s) 79, 140, 175, 209, 336
BssMI GATC 2 cut(s) 517, 646
BssNI GRCGYC 1 cut(s) 659
BssT1I CCWWGG 3 cut(s) 79, 140, 336
Bst2UI CCWGG 2 cut(s) 18, 288
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 307
BstACI GRCGYC 1 cut(s) 659
BstBAI YACGTR 1 cut(s) 475
BstC8I GCNNGC 1 cut(s) 604
BstDSI CCRYGG 2 cut(s) 175, 336
BstFNI CGCG 1 cut(s) 105
BstHHI GCGC 1 cut(s) 608
BstKTI GATC 2 cut(s) 520, 649
BstMAI GTCTC 3 cut(s) 58, 174, 650
BstMBI GATC 2 cut(s) 517, 646
BstMWI GCNNNNNNNGC 2 cut(s) 73, 288
BstNI CCWGG 2 cut(s) 18, 288
BstSCI CCNGG 3 cut(s) 16, 286, 651
BstSFI CTRYAG 2 cut(s) 117, 555
BstUI CGCG 1 cut(s) 105
BstV2I GAAGAC 1 cut(s) 587
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
BsuRI GGCC 3 cut(s) 241, 275, 511
BtgI CCRYGG 2 cut(s) 175, 336
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 604
CfoI GCGC 1 cut(s) 608
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 2 cut(s) 145, 240
CsiI ACCWGGT 1 cut(s) 16
Csp6I GTAC 3 cut(s) 265, 472, 567
CviAII CATG 2 cut(s) 337, 449
CviQI GTAC 3 cut(s) 265, 472, 567
DpnI GATC 2 cut(s) 519, 648
DpnII GATC 2 cut(s) 517, 646
EaeI YGGCCR 1 cut(s) 509
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
Eco130I CCWWGG 3 cut(s) 79, 140, 336
Eco31I GGTCTC 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 492
EcoO109I RGGNCCY 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 452
EcoRII CCWGG 2 cut(s) 16, 286
EcoT14I CCWWGG 3 cut(s) 79, 140, 336
ErhI CCWWGG 3 cut(s) 79, 140, 336
Esp3I CGTCTC 1 cut(s) 650
FaeI CATG 2 cut(s) 340, 452
FaiI YATR 6 cut(s) 69, 338, 348, 399, 450, 718
FalI AAGNNNNNCTT 2 cut(s) 556, 588
FaqI GGGAC 1 cut(s) 158
FatI CATG 2 cut(s) 336, 448
FblI GTMKAC 2 cut(s) 120, 414
Fnu4HI GCNGC 2 cut(s) 11, 103
Fsp4HI GCNGC 2 cut(s) 11, 103
GlaI GCGC 1 cut(s) 607
GluI GCNGC 2 cut(s) 11, 103
HaeIII GGCC 3 cut(s) 241, 275, 511
HapII CCGG 2 cut(s) 279, 653
HhaI GCGC 1 cut(s) 608
Hin1I GRCGYC 1 cut(s) 659
Hin1II CATG 2 cut(s) 340, 452
Hin6I GCGC 1 cut(s) 606
HinP1I GCGC 1 cut(s) 606
HinfI GANTC 1 cut(s) 551
HpaII CCGG 2 cut(s) 279, 653
HphI GGTGA 3 cut(s) 276, 328, 656
Hpy166II GTNNAC 4 cut(s) 121, 298, 415, 472
Hpy188I TCNGA 3 cut(s) 307, 527, 613
Hpy188III TCNNGA 2 cut(s) 492, 633
Hpy8I GTNNAC 4 cut(s) 121, 298, 415, 472
HpyAV CCTTC 4 cut(s) 67, 158, 265, 692
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 3 cut(s) 294, 474, 659
HpyCH4V TGCA 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 288
HpySE526I ACGT 3 cut(s) 294, 474, 659
Hsp92I GRCGYC 1 cut(s) 659
Hsp92II CATG 2 cut(s) 340, 452
HspAI GCGC 1 cut(s) 606
Kzo9I GATC 2 cut(s) 517, 646
LmnI GCTCC 4 cut(s) 7, 81, 364, 560
LweI GCATC 1 cut(s) 617
MabI ACCWGGT 1 cut(s) 16
MaeII ACGT 3 cut(s) 294, 474, 659
MaeIII GTNAC 2 cut(s) 548, 680
MalI GATC 2 cut(s) 519, 648
MboI GATC 2 cut(s) 517, 646
MflI RGATCY 1 cut(s) 517
MluCI AATT 4 cut(s) 452, 458, 542, 736
MlyI GAGTC 1 cut(s) 545
MmeI TCCRAC 3 cut(s) 59, 386, 505
MnlI CCTC 5 cut(s) 204, 227, 231, 523, 723
MseI TTAA 2 cut(s) 672, 693
MspI CCGG 2 cut(s) 279, 653
MspR9I CCNGG 3 cut(s) 18, 288, 653
MvaI CCWGG 2 cut(s) 18, 288
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 73, 288
NciI CCSGG 1 cut(s) 653
NcoI CCATGG 1 cut(s) 336
NdeII GATC 2 cut(s) 517, 646
NlaIII CATG 2 cut(s) 340, 452
NlaIV GGNNCC 2 cut(s) 146, 519
NmeAIII GCCGAG 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 548
PaeR7I CTCGAG 1 cut(s) 492
PfoI TCCNGGA 1 cut(s) 651
PkrI GCNGC 2 cut(s) 12, 104
PleI GAGTC 1 cut(s) 545
PpsI GAGTC 1 cut(s) 545
Ppu21I YACGTR 1 cut(s) 475
PpuMI RGGWCCY 1 cut(s) 145
PshBI ATTAAT 2 cut(s) 672, 693
Psp5II RGGWCCY 1 cut(s) 145
Psp6I CCWGG 2 cut(s) 16, 286
PspGI CCWGG 2 cut(s) 16, 286
PspN4I GGNNCC 2 cut(s) 146, 519
PspPI GGNCC 2 cut(s) 145, 240
PspPPI RGGWCCY 1 cut(s) 145
PsuI RGATCY 1 cut(s) 517
RsaI GTAC 3 cut(s) 266, 473, 568
RsaNI GTAC 3 cut(s) 265, 472, 567
SaqAI TTAA 2 cut(s) 672, 693
SatI GCNGC 2 cut(s) 11, 103
Sau3AI GATC 2 cut(s) 517, 646
Sau96I GGNCC 2 cut(s) 145, 240
ScaI AGTACT 1 cut(s) 568
SchI GAGTC 1 cut(s) 545
ScrFI CCNGG 3 cut(s) 18, 288, 653
SexAI ACCWGGT 1 cut(s) 16
SfaNI GCATC 1 cut(s) 617
SfcI CTRYAG 2 cut(s) 117, 555
Sfr274I CTCGAG 1 cut(s) 492
SinI GGWCC 1 cut(s) 145
SlaI CTCGAG 1 cut(s) 492
SmlI CTYRAG 2 cut(s) 228, 492
SmoI CTYRAG 2 cut(s) 228, 492
Sse9I AATT 4 cut(s) 452, 458, 542, 736
SsiI CCGC 1 cut(s) 103
StyD4I CCNGG 3 cut(s) 16, 286, 651
StyI CCWWGG 3 cut(s) 79, 140, 336
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 3 cut(s) 297, 477, 662
TaqI TCGA 2 cut(s) 466, 493
TasI AATT 4 cut(s) 452, 458, 542, 736
TatI WGTACW 1 cut(s) 566
TauI GCSGC 1 cut(s) 105
Tru1I TTAA 2 cut(s) 672, 693
Tru9I TTAA 2 cut(s) 672, 693
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 548
TseI GCWGC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 4 cut(s) 404, 465, 630, 711
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 145
VspI ATTAAT 2 cut(s) 672, 693
XapI RAATTY 3 cut(s) 452, 542, 736
XhoI CTCGAG 1 cut(s) 492
XmiI GTMKAC 2 cut(s) 120, 414
ZraI GACGTC 1 cut(s) 660
ZrmI AGTACT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.