Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0007123

Physical Location & Seq

Genomic Coordinates Forward (+)

17878685 .. 17880107

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1167900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGAGGAGCTACCACCAGGTTATCGCTTCTATCCAACAGAAGAAGAACTGGTCTCCTTCTATCTGCAAAACAAGCTCCAAGGGAAGCGAGAAGATACTCGTCGCGTAATCCCGATTGTAGACATTTACAGCAAAGAGCCATGGGACCTTCCAAAGTTATCGGGGGAGTTGTGCCGTGGAGACAAAGAGCAATGGTTTTTCTTTACGCGGAGGCAACAACGAGAAGCTCAAGGAGGAAGGCCCAACAGGACTACTGCCTCTGGGTACTGGAAGGCCACCGGCTCACCTGGCTACGTTTACTCTTCAGAAAACAAGGTGATTGGAGTGAAGAAAACCATGGTTTTCTATAAAGGCAAAGCTCCAACCGGAAGAAAAACCAAATGGAAGATGAATGAGTATAGAGCCATTGAGGTAGACGACTCAACTACCAATACACCCAAGTTGGGGCATGAATTCAGATTATGTCGAGTGTACGTGGTATCTGGGAGTTCTCGAGCATTTGACAGACGGCCATTGGAGCCAGTCGGAGAGGCACAACAAAAATTTAGTGACTCTACAGGAGCAAGTACTTCTTCTTTGAAGACTACAATGGTGGAGAAAGCAAGCTCATCAGATGAAACTTATTCAAATTCAGGAGAGCTTGGTGATCTCCCGGAGACGTCAGCAGGGATTAATAGTAGTAACTGGGAGATTAATGAAGGTTTTGAAGAACCTCTATGGGAATGGGAACAACTAAATTTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

249

Amino Acids

28.36

Weight (kDa)

6.09

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	5 - 134	5.4e-41	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44350 AT3G44350 AT5G22380
fragaria_vesca	FvH4_3g25470
malus_domestica	MD03G1148500.v1.1 MD11G1167900.v1.1
prunus_persica	Prupe.6G134400_v2.0.a1
pyrus_communis	pycom03g10280 pycom11g14010
rosa_chinensis	RchiOBHm_Chr5g0046601 RchiOBHm_Chr5g0046631
rosa_laevigata	RLG00000034423 RLG00000034425
rosa_multiflora	Rmu_sc0003878.1_g000003 Rmu_sc0003878.1_g000016
rosa_roxburghii	Rroxscaffold_1G00034720 Rroxscaffold_1G00034750
rosa_rugosa	Rorug05G0229900 Rorug05G0230200
rosa_samantha	Rh5AG310400 Rh5BG318600 Rh5CG344500 Rh5DG329100
rosa_wichuraiana	Rw5G028930 Rw5G028960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	662
AccI	GTMKAC	2 cut(s)	120, 414
AccII	CGCG	2 cut(s)	105, 208
AciI	CCGC	1 cut(s)	208
AcoI	YGGCCR	1 cut(s)	509
AcsI	RAATTY	4 cut(s)	452, 542, 628, 736
AcuI	CTGAAG	1 cut(s)	288
AcyI	GRCGYC	1 cut(s)	659
AfaI	GTAC	3 cut(s)	266, 473, 568
AfiI	CCNNNNNNNGG	2 cut(s)	443, 444
AgsI	TTSAA	3 cut(s)	580, 627, 707
AjnI	CCWGG	2 cut(s)	16, 286
AluBI	AGCT	6 cut(s)	10, 76, 227, 359, 606, 640
AluI	AGCT	6 cut(s)	10, 76, 227, 359, 606, 640
Alw26I	GTCTC	3 cut(s)	58, 174, 650
Ama87I	CYCGRG	1 cut(s)	492
AoxI	GGCC	3 cut(s)	239, 273, 509
ApoI	RAATTY	4 cut(s)	452, 542, 628, 736
AseI	ATTAAT	2 cut(s)	672, 693
AspS9I	GGNCC	2 cut(s)	145, 240
AsuC2I	CCSGG	1 cut(s)	653
AsuHPI	GGTGA	3 cut(s)	276, 328, 656
AvaI	CYCGRG	1 cut(s)	492
AvaII	GGWCC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	587
BceAI	ACGGC	2 cut(s)	159, 524
BciT130I	CCWGG	2 cut(s)	18, 288
BcnI	CCSGG	1 cut(s)	653
BcoDI	GTCTC	3 cut(s)	58, 174, 650
BfmI	CTRYAG	1 cut(s)	555
BmcAI	AGTACT	1 cut(s)	568
Bme1390I	CCNGG	3 cut(s)	18, 288, 653
Bme18I	GGWCC	1 cut(s)	145
BmeT110I	CYCGRG	1 cut(s)	492
BmgT120I	GGNCC	2 cut(s)	145, 240
BmiI	GGNNCC	2 cut(s)	146, 519
BmrFI	CCNGG	3 cut(s)	18, 288, 653
BmrI	ACTGGG	1 cut(s)	694
BmuI	ACTGGG	1 cut(s)	694
BpiI	GAAGAC	1 cut(s)	587
BpuEI	CTTGAG	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	653
BsaAI	YACGTR	1 cut(s)	475
BsaHI	GRCGYC	1 cut(s)	659
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	4 cut(s)	79, 140, 175, 336
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	2 cut(s)	443, 444
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	4 cut(s)	54, 272, 521, 689
Bse3DI	GCAATG	1 cut(s)	197
BseBI	CCWGG	2 cut(s)	18, 288
BseDI	CCNNGG	4 cut(s)	79, 140, 175, 336
BseLI	CCNNNNNNNGG	2 cut(s)	443, 444
BseMI	GCAATG	1 cut(s)	197
BseNI	ACTGG	4 cut(s)	54, 272, 521, 689
BseRI	GAGGAG	1 cut(s)	20
Bsh1236I	CGCG	2 cut(s)	105, 208
BshFI	GGCC	3 cut(s)	241, 275, 511
BsiHKCI	CYCGRG	1 cut(s)	492
BsiSI	CCGG	3 cut(s)	279, 366, 653
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	2 cut(s)	443, 444
BsmAI	GTCTC	3 cut(s)	58, 174, 650
BsmBI	CGTCTC	1 cut(s)	650
BsmFI	GGGAC	1 cut(s)	158
BsnI	GGCC	3 cut(s)	241, 275, 511
Bso31I	GGTCTC	1 cut(s)	58
BsoBI	CYCGRG	1 cut(s)	492
Bsp143I	GATC	1 cut(s)	646
Bsp19I	CCATGG	2 cut(s)	140, 336
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	3 cut(s)	241, 275, 511
BspFNI	CGCG	2 cut(s)	105, 208
BspLI	GGNNCC	2 cut(s)	146, 519
BspTNI	GGTCTC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	197
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	4 cut(s)	54, 272, 521, 689
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	4 cut(s)	79, 140, 175, 336
BssMI	GATC	1 cut(s)	646
BssNI	GRCGYC	1 cut(s)	659
BssT1I	CCWWGG	3 cut(s)	79, 140, 336
Bst2UI	CCWGG	2 cut(s)	18, 288
Bst6I	CTCTTC	1 cut(s)	307
BstACI	GRCGYC	1 cut(s)	659
BstBAI	YACGTR	1 cut(s)	475
BstC8I	GCNNGC	1 cut(s)	604
BstDSI	CCRYGG	3 cut(s)	140, 175, 336
BstFNI	CGCG	2 cut(s)	105, 208
BstKTI	GATC	1 cut(s)	649
BstMAI	GTCTC	3 cut(s)	58, 174, 650
BstMBI	GATC	1 cut(s)	646
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 288, 517
BstNI	CCWGG	2 cut(s)	18, 288
BstSCI	CCNGG	3 cut(s)	16, 286, 651
BstSFI	CTRYAG	1 cut(s)	555
BstUI	CGCG	2 cut(s)	105, 208
BstV2I	GAAGAC	1 cut(s)	587
BsuRI	GGCC	3 cut(s)	241, 275, 511
BtgI	CCRYGG	3 cut(s)	140, 175, 336
Cac8I	GCNNGC	1 cut(s)	604
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	2 cut(s)	145, 240
CsiI	ACCWGGT	1 cut(s)	16
Csp6I	GTAC	3 cut(s)	265, 472, 567
CviAII	CATG	3 cut(s)	141, 337, 449
CviQI	GTAC	3 cut(s)	265, 472, 567
DpnI	GATC	1 cut(s)	648
DpnII	GATC	1 cut(s)	646
EaeI	YGGCCR	1 cut(s)	509
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
Eco130I	CCWWGG	3 cut(s)	79, 140, 336
Eco31I	GGTCTC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	492
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	452
EcoRII	CCWGG	2 cut(s)	16, 286
EcoT14I	CCWWGG	3 cut(s)	79, 140, 336
ErhI	CCWWGG	3 cut(s)	79, 140, 336
Esp3I	CGTCTC	1 cut(s)	650
FaeI	CATG	3 cut(s)	144, 340, 452
FaiI	YATR	7 cut(s)	142, 338, 348, 399, 450, 463, 718
FalI	AAGNNNNNCTT	2 cut(s)	556, 588
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	3 cut(s)	140, 336, 448
FblI	GTMKAC	2 cut(s)	120, 414
HaeIII	GGCC	3 cut(s)	241, 275, 511
HapII	CCGG	3 cut(s)	279, 366, 653
Hin1I	GRCGYC	1 cut(s)	659
Hin1II	CATG	3 cut(s)	144, 340, 452
HinfI	GANTC	2 cut(s)	419, 551
HpaII	CCGG	3 cut(s)	279, 366, 653
HphI	GGTGA	3 cut(s)	276, 328, 656
Hpy166II	GTNNAC	4 cut(s)	121, 298, 415, 472
Hpy188I	TCNGA	4 cut(s)	307, 458, 527, 613
Hpy188III	TCNNGA	3 cut(s)	112, 492, 633
Hpy8I	GTNNAC	4 cut(s)	121, 298, 415, 472
Hpy99I	CGWCG	1 cut(s)	105
HpyAV	CCTTC	5 cut(s)	67, 158, 231, 265, 692
HpyCH4IV	ACGT	3 cut(s)	294, 474, 659
HpyCH4V	TGCA	1 cut(s)	67
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 288, 517
HpySE526I	ACGT	3 cut(s)	294, 474, 659
Hsp92I	GRCGYC	1 cut(s)	659
Hsp92II	CATG	3 cut(s)	144, 340, 452
Kzo9I	GATC	1 cut(s)	646
LmnI	GCTCC	5 cut(s)	7, 81, 364, 517, 560
MabI	ACCWGGT	1 cut(s)	16
MaeII	ACGT	3 cut(s)	294, 474, 659
MaeIII	GTNAC	2 cut(s)	548, 680
MalI	GATC	1 cut(s)	648
MboI	GATC	1 cut(s)	646
MluCI	AATT	4 cut(s)	452, 542, 628, 736
MlyI	GAGTC	2 cut(s)	413, 545
MmeI	TCCRAC	3 cut(s)	59, 386, 505
MnlI	CCTC	6 cut(s)	204, 227, 268, 403, 523, 723
MseI	TTAA	2 cut(s)	672, 693
MspI	CCGG	3 cut(s)	279, 366, 653
MspR9I	CCNGG	3 cut(s)	18, 288, 653
MvaI	CCWGG	2 cut(s)	18, 288
MvnI	CGCG	2 cut(s)	105, 208
MwoI	GCNNNNNNNGC	3 cut(s)	73, 288, 517
NciI	CCSGG	1 cut(s)	653
NcoI	CCATGG	2 cut(s)	140, 336
NdeII	GATC	1 cut(s)	646
NlaIII	CATG	3 cut(s)	144, 340, 452
NlaIV	GGNNCC	2 cut(s)	146, 519
NmuCI	GTSAC	1 cut(s)	548
PaeR7I	CTCGAG	1 cut(s)	492
PfoI	TCCNGGA	1 cut(s)	651
PleI	GAGTC	2 cut(s)	413, 545
PpsI	GAGTC	2 cut(s)	413, 545
Ppu21I	YACGTR	1 cut(s)	475
PpuMI	RGGWCCY	1 cut(s)	145
PshBI	ATTAAT	2 cut(s)	672, 693
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	2 cut(s)	16, 286
PspGI	CCWGG	2 cut(s)	16, 286
PspN4I	GGNNCC	2 cut(s)	146, 519
PspPI	GGNCC	2 cut(s)	145, 240
PspPPI	RGGWCCY	1 cut(s)	145
RsaI	GTAC	3 cut(s)	266, 473, 568
RsaNI	GTAC	3 cut(s)	265, 472, 567
SaqAI	TTAA	2 cut(s)	672, 693
Sau3AI	GATC	1 cut(s)	646
Sau96I	GGNCC	2 cut(s)	145, 240
ScaI	AGTACT	1 cut(s)	568
SchI	GAGTC	2 cut(s)	413, 545
ScrFI	CCNGG	3 cut(s)	18, 288, 653
SexAI	ACCWGGT	1 cut(s)	16
SfcI	CTRYAG	1 cut(s)	555
Sfr274I	CTCGAG	1 cut(s)	492
SinI	GGWCC	1 cut(s)	145
SlaI	CTCGAG	1 cut(s)	492
SmlI	CTYRAG	2 cut(s)	228, 492
SmoI	CTYRAG	2 cut(s)	228, 492
Sse9I	AATT	4 cut(s)	452, 542, 628, 736
SsiI	CCGC	1 cut(s)	208
StyD4I	CCNGG	3 cut(s)	16, 286, 651
StyI	CCWWGG	3 cut(s)	79, 140, 336
TaiI	ACGT	3 cut(s)	297, 477, 662
TaqI	TCGA	2 cut(s)	466, 493
TasI	AATT	4 cut(s)	452, 542, 628, 736
TatI	WGTACW	1 cut(s)	566
Tru1I	TTAA	2 cut(s)	672, 693
Tru9I	TTAA	2 cut(s)	672, 693
TseFI	GTSAC	1 cut(s)	548
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	4 cut(s)	404, 465, 630, 711
VpaK11BI	GGWCC	1 cut(s)	145
VspI	ATTAAT	2 cut(s)	672, 693
XapI	RAATTY	4 cut(s)	452, 542, 628, 736
XhoI	CTCGAG	1 cut(s)	492
XmiI	GTMKAC	2 cut(s)	120, 414
ZraI	GACGTC	1 cut(s)	660
ZrmI	AGTACT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.