Rw5G028930
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0007123
Physical Location & Seq
Reverse (-)
43987545 .. 43989039
1495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G028930.1

Sequence Viewer

Length: 777 bp
ATGGATCAAGCACTCACAACAGGCTTTCGTTTCTACCCAACTGAAGAAGAACTCGTCTCCTTCTACCTCCTCAACAAGCTCGAATCCAAGCACCAAGACAGCATTCGCCGCGTCATCCCAGACCTTGACATTTACAGCATCGAGCCATGGGAGCTCCCAAAGTATGCAGCGGAGCTGTGCCGTGGAGACACCGAGCAGTGGTTCTTCTTTACGCCGAGGCAGCAACGAGAAGTGCAAGGTGGGAGACCTAACCGGACTACGGCTTACGGCTACTGGAAGGCAACTGGCTCGCCTGGCTATGTTTACTCCTCGGATAATCGGGTCATTGGAGTGAAGAAAACCATGGTTTTCTACAAAGGGAAAGCTCCAACTGGAAGAAAGACCAAGTGGAAGATGAATGAGTACAGAGCCATTGAAGAAACAGCAGCTCCCTCAGCTTCCACTAGTAATAGTGCCAGTACTGCTATCATTCCCAAGTTGAGGCATGAATTCCGACTGTGCCGGGTGTACATAGTATCGGGGAGTTCTCGAGCATTTGACAGGCGCCCGCTGGAAGGAAGCAGAGATACATCACATCGACAAAGTGATTTAACGGGATCAAGTGCTTCTTCATCTCACCAGGCAGCAACGGTAGCAGAGAAAACAAGCTCATCATCGGATACTCATTCAAATTCAGGAGACCTAGCTGATTTCCAAGCAGGGAATAATAATGATTGGGAAATGAATGATGATCTTCAACAACCTCTATGGGAATGGGAGCAGCTAATCTTACTCTAA

Protein Analysis

258

Amino Acids

29.35

Weight (kDa)

6.54

Isoelectric Point (pI)

48.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 136 3.3e-39 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 543
AccII CGCG 1 cut(s) 111
AciI CCGC 3 cut(s) 109, 170, 548
AclWI GGATC 2 cut(s) 12, 604
AcsI RAATTY 2 cut(s) 488, 670
AcuI CTGAAG 1 cut(s) 63
AcyI GRCGYC 1 cut(s) 544
AfaI GTAC 3 cut(s) 404, 460, 509
AfiI CCNNNNNNNGG 4 cut(s) 198, 259, 480, 554
AgsI TTSAA 3 cut(s) 416, 669, 737
AhlI ACTAGT 1 cut(s) 443
AjnI CCWGG 2 cut(s) 292, 618
AjuI GAANNNNNNNTTGG 2 cut(s) 87, 119
AluBI AGCT 9 cut(s) 79, 154, 175, 365, 428, 437, 648, 686, 763
AluI AGCT 9 cut(s) 79, 154, 175, 365, 428, 437, 648, 686, 763
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 4 cut(s) 61, 180, 238, 672
AlwI GGATC 2 cut(s) 12, 604
Ama87I CYCGRG 1 cut(s) 528
ApeKI GCWGC 5 cut(s) 167, 220, 425, 623, 760
ApoI RAATTY 2 cut(s) 488, 670
AspLEI GCGC 1 cut(s) 546
AsuC2I CCSGG 1 cut(s) 503
AsuHPI GGTGA 1 cut(s) 608
AvaI CYCGRG 1 cut(s) 528
BanI GGYRCC 1 cut(s) 543
BanII GRGCYC 1 cut(s) 156
BarI GAAGNNNNNNTAC 2 cut(s) 550, 582
Bbv12I GWGCWC 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 433
BbvI GCAGC 5 cut(s) 179, 232, 437, 635, 772
BceAI ACGGC 3 cut(s) 165, 276, 283
BcgI CGANNNNNNTGC 2 cut(s) 270, 304
BciT130I CCWGG 2 cut(s) 294, 620
BciVI GTATCC 1 cut(s) 652
BcnI CCSGG 1 cut(s) 503
BcoDI GTCTC 4 cut(s) 61, 180, 238, 672
BcuI ACTAGT 1 cut(s) 443
BfaI CTAG 2 cut(s) 444, 683
BfoI RGCGCY 1 cut(s) 547
BfuI GTATCC 1 cut(s) 652
BisI GCNGC 6 cut(s) 109, 168, 221, 426, 624, 761
BlsI GCNGC 6 cut(s) 110, 169, 222, 427, 625, 762
BmcAI AGTACT 1 cut(s) 460
Bme1390I CCNGG 3 cut(s) 294, 503, 620
BmeT110I CYCGRG 1 cut(s) 528
BmiI GGNNCC 1 cut(s) 545
BmrFI CCNGG 3 cut(s) 294, 503, 620
BmsI GCATC 1 cut(s) 147
Bpu10I CCTNAGC 1 cut(s) 433
BpuMI CCSGG 1 cut(s) 503
BsaHI GRCGYC 1 cut(s) 544
BsaI GGTCTC 2 cut(s) 238, 672
BsaJI CCNNGG 5 cut(s) 146, 181, 215, 309, 342
BsaWI WCCGGW 1 cut(s) 252
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bsc4I CCNNNNNNNGG 4 cut(s) 198, 259, 480, 554
Bse1I ACTGG 4 cut(s) 278, 289, 376, 456
BseBI CCWGG 2 cut(s) 294, 620
BseDI CCNNGG 5 cut(s) 146, 181, 215, 309, 342
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 4 cut(s) 198, 259, 480, 554
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 4 cut(s) 278, 289, 376, 456
BseRI GAGGAG 2 cut(s) 59, 298
BseXI GCAGC 5 cut(s) 179, 232, 437, 635, 772
Bsh1236I CGCG 1 cut(s) 111
BshNI GGYRCC 1 cut(s) 543
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 528
BsiSI CCGG 2 cut(s) 253, 502
BslI CCNNNNNNNGG 4 cut(s) 198, 259, 480, 554
BsmAI GTCTC 4 cut(s) 61, 180, 238, 672
BsmBI CGTCTC 1 cut(s) 61
BsmI GAATGC 1 cut(s) 102
Bso31I GGTCTC 2 cut(s) 238, 672
BsoBI CYCGRG 1 cut(s) 528
Bsp1286I GDGCHC 1 cut(s) 156
Bsp1407I TGTACA 1 cut(s) 507
Bsp143I GATC 3 cut(s) 4, 596, 730
Bsp19I CCATGG 2 cut(s) 146, 342
BspACI CCGC 3 cut(s) 109, 170, 548
BspCNI CTCAG 1 cut(s) 446
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 545
BspPI GGATC 2 cut(s) 12, 604
BspT107I GGYRCC 1 cut(s) 543
BspTNI GGTCTC 2 cut(s) 238, 672
BsrGI TGTACA 1 cut(s) 507
BsrI ACTGG 4 cut(s) 278, 289, 376, 456
BssECI CCNNGG 5 cut(s) 146, 181, 215, 309, 342
BssMI GATC 3 cut(s) 4, 596, 730
BssNI GRCGYC 1 cut(s) 544
BssT1I CCWWGG 2 cut(s) 146, 342
Bst2UI CCWGG 2 cut(s) 294, 620
Bst4CI ACNGT 2 cut(s) 498, 631
BstACI GRCGYC 1 cut(s) 544
BstAUI TGTACA 1 cut(s) 507
BstC8I GCNNGC 2 cut(s) 290, 548
BstDEI CTNAG 1 cut(s) 433
BstDSI CCRYGG 3 cut(s) 146, 181, 342
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 111
BstH2I RGCGCY 1 cut(s) 547
BstHHI GCGC 1 cut(s) 546
BstKTI GATC 3 cut(s) 7, 599, 733
BstMAI GTCTC 4 cut(s) 61, 180, 238, 672
BstMBI GATC 3 cut(s) 4, 596, 730
BstMWI GCNNNNNNNGC 7 cut(s) 108, 151, 220, 294, 434, 461, 632
BstNI CCWGG 2 cut(s) 294, 620
BstSCI CCNGG 3 cut(s) 292, 501, 618
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 5 cut(s) 179, 232, 437, 635, 772
BsuI GTATCC 1 cut(s) 652
BtgI CCRYGG 3 cut(s) 146, 181, 342
BtsCI GGATG 1 cut(s) 114
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 203
Cac8I GCNNGC 2 cut(s) 290, 548
CfoI GCGC 1 cut(s) 546
CseI GACGC 1 cut(s) 100
Csp6I GTAC 3 cut(s) 403, 459, 508
CviAII CATG 3 cut(s) 147, 343, 485
CviQI GTAC 3 cut(s) 403, 459, 508
DdeI CTNAG 1 cut(s) 433
DinI GGCGCC 1 cut(s) 545
DpnI GATC 3 cut(s) 6, 598, 732
DpnII GATC 3 cut(s) 4, 596, 730
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 2 cut(s) 146, 342
Eco24I GRGCYC 1 cut(s) 156
Eco31I GGTCTC 2 cut(s) 238, 672
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 63
Eco88I CYCGRG 1 cut(s) 528
EcoICRI GAGCTC 1 cut(s) 154
EcoRI GAATTC 1 cut(s) 488
EcoRII CCWGG 2 cut(s) 292, 618
EcoT14I CCWWGG 2 cut(s) 146, 342
EcoT38I GRGCYC 1 cut(s) 156
EgeI GGCGCC 1 cut(s) 545
EheI GGCGCC 1 cut(s) 545
ErhI CCWWGG 2 cut(s) 146, 342
Esp3I CGTCTC 1 cut(s) 61
FaeI CATG 3 cut(s) 150, 346, 488
FaiI YATR 7 cut(s) 148, 165, 300, 344, 486, 512, 748
FalI AAGNNNNNCTT 2 cut(s) 592, 624
FatI CATG 3 cut(s) 146, 342, 484
FauI CCCGC 1 cut(s) 555
Fnu4HI GCNGC 6 cut(s) 109, 168, 221, 426, 624, 761
FokI GGATG 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 6 cut(s) 109, 168, 221, 426, 624, 761
FspBI CTAG 2 cut(s) 444, 683
GlaI GCGC 1 cut(s) 545
GluI GCNGC 6 cut(s) 109, 168, 221, 426, 624, 761
HaeII RGCGCY 1 cut(s) 547
HapII CCGG 2 cut(s) 253, 502
HgaI GACGC 1 cut(s) 100
HhaI GCGC 1 cut(s) 546
Hin1I GRCGYC 1 cut(s) 544
Hin1II CATG 3 cut(s) 150, 346, 488
Hin6I GCGC 1 cut(s) 544
HinP1I GCGC 1 cut(s) 544
HinfI GANTC 1 cut(s) 83
HpaII CCGG 2 cut(s) 253, 502
HphI GGTGA 1 cut(s) 608
Hpy166II GTNNAC 2 cut(s) 304, 508
Hpy188I TCNGA 3 cut(s) 313, 494, 658
Hpy188III TCNNGA 2 cut(s) 528, 675
Hpy8I GTNNAC 2 cut(s) 304, 508
HpyAV CCTTC 3 cut(s) 70, 271, 548
HpyCH4III ACNGT 2 cut(s) 498, 631
HpyCH4V TGCA 2 cut(s) 167, 235
HpyF10VI GCNNNNNNNGC 7 cut(s) 108, 151, 220, 294, 434, 461, 632
HpyF3I CTNAG 1 cut(s) 433
Hsp92I GRCGYC 1 cut(s) 544
Hsp92II CATG 3 cut(s) 150, 346, 488
HspAI GCGC 1 cut(s) 544
KasI GGCGCC 1 cut(s) 543
Kzo9I GATC 3 cut(s) 4, 596, 730
LmnI GCTCC 6 cut(s) 151, 159, 172, 370, 433, 757
Lsp1109I GCAGC 5 cut(s) 179, 232, 437, 635, 772
LweI GCATC 1 cut(s) 147
MaeI CTAG 2 cut(s) 444, 683
MalI GATC 3 cut(s) 6, 598, 732
MboI GATC 3 cut(s) 4, 596, 730
MboII GAAGA 9 cut(s) 56, 59, 196, 346, 387, 403, 428, 600, 725
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 2 cut(s) 488, 670
Mly113I GGCGCC 1 cut(s) 544
MmeI TCCRAC 2 cut(s) 392, 517
MnlI CCTC 7 cut(s) 77, 80, 210, 319, 442, 474, 753
MseI TTAA 1 cut(s) 590
MslI CAYNNNNRTG 1 cut(s) 329
MspA1I CMGCKG 2 cut(s) 170, 550
MspI CCGG 2 cut(s) 253, 502
MspR9I CCNGG 3 cut(s) 294, 503, 620
Mva1269I GAATGC 1 cut(s) 102
MvaI CCWGG 2 cut(s) 294, 620
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 7 cut(s) 108, 151, 220, 294, 434, 461, 632
NarI GGCGCC 1 cut(s) 544
NciI CCSGG 1 cut(s) 503
NcoI CCATGG 2 cut(s) 146, 342
NdeII GATC 3 cut(s) 4, 596, 730
NlaIII CATG 3 cut(s) 150, 346, 488
NlaIV GGNNCC 1 cut(s) 545
NmeAIII GCCGAG 1 cut(s) 240
PaeR7I CTCGAG 1 cut(s) 528
PctI GAATGC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 6 cut(s) 110, 169, 222, 427, 625, 762
PluTI GGCGCC 1 cut(s) 547
Psp124BI GAGCTC 1 cut(s) 156
Psp6I CCWGG 2 cut(s) 292, 618
PspGI CCWGG 2 cut(s) 292, 618
PspN4I GGNNCC 1 cut(s) 545
RsaI GTAC 3 cut(s) 404, 460, 509
RsaNI GTAC 3 cut(s) 403, 459, 508
RseI CAYNNNNRTG 1 cut(s) 329
SacI GAGCTC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 590
SatI GCNGC 6 cut(s) 109, 168, 221, 426, 624, 761
Sau3AI GATC 3 cut(s) 4, 596, 730
ScaI AGTACT 1 cut(s) 460
ScrFI CCNGG 3 cut(s) 294, 503, 620
SduI GDGCHC 1 cut(s) 156
SfaNI GCATC 1 cut(s) 147
SfoI GGCGCC 1 cut(s) 545
Sfr274I CTCGAG 1 cut(s) 528
SlaI CTCGAG 1 cut(s) 528
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 528
SmoI CTYRAG 1 cut(s) 528
SpeI ACTAGT 1 cut(s) 443
Sse9I AATT 2 cut(s) 488, 670
SsiI CCGC 3 cut(s) 109, 170, 548
SspDI GGCGCC 1 cut(s) 543
SspMI CTAG 2 cut(s) 444, 683
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 3 cut(s) 292, 501, 618
StyI CCWWGG 2 cut(s) 146, 342
TaaI ACNGT 2 cut(s) 498, 631
TaqI TCGA 4 cut(s) 81, 141, 529, 577
TasI AATT 2 cut(s) 488, 670
TatI WGTACW 3 cut(s) 402, 458, 507
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 590
Tru9I TTAA 1 cut(s) 590
TscAI CASTG 1 cut(s) 203
TseI GCWGC 5 cut(s) 167, 220, 425, 623, 760
TspDTI ATGAA 4 cut(s) 410, 501, 600, 737
TspRI CASTG 1 cut(s) 203
XapI RAATTY 2 cut(s) 488, 670
XhoI CTCGAG 1 cut(s) 528
XspI CTAG 2 cut(s) 444, 683
ZrmI AGTACT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.