Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007123

Physical Location & Seq

Genomic Coordinates Forward (+)

50467723 .. 50470243

Gene Structure 2521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00034720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGATCAAGCACCCACAACAGGCTTTCGTTTCTACCCAACTGAAGAAGAACTCGTCTCCTTCTACCTCCTCAACAAACTCGAATCCAAGCACCAAGACAGCATTCGCCGCGTCATCCCAGACCTTGACATTTACAGCACCGAGCCATGGGAGCTCCCAAAGTATGCAGCGGAGCTTTGCCGTGGAGACACCGAGCAGTGGTTCTTCTTTATGCCGAGGCAGCAACGAGAGGCGCAAGGTGGGAGACCTAACCGGACTACGGCTTCTGGCTACTGGAAGGCAACTGGCTCTCCTGGGTATGTTTACTCCTCGGATAATCGGGTCATTGGAGTGAAAAAAACCATGGTTTTCTACAAAGGGAAAGCTCCGACGGGAAGAAAGACCAAGTGGAAGATGAATGAGTACAGAGCCATTGAAGAAACAGCAGCTCCCTCAGCTACCACTAGTAGTAGTGCTAGTACAGCTATCATTCCCAAGTTGAGGCATGAATTCCGACTGTGCCGGGTGTACATAGTATCGGGGAGTTCTCGAGCATTTGACAGGCGCCCGCTAGAAGGAAGCGGAGAAGCATCACATCGACAAAGTGATTTAACGGGGGCAAGTGCTTCTTCATCTCACCAGGCAACAATGGTAGCAGAGAAAACAAGCTCATCTGATACTCGTTCAAATTCAGGAGATCGAGCTGATCTCCAAGCAGAGACTAATGATTGGGAAATGGATGATGATCTTCAACAACCTCTATGGGAATGGGAGCAGCTAAACTTACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

256

Amino Acids

29.05

Weight (kDa)

6.15

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 136	3e-40	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007123)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44350 AT3G44350 AT5G22380
fragaria_vesca	FvH4_3g25470
malus_domestica	MD03G1148500.v1.1 MD11G1167900.v1.1
prunus_persica	Prupe.6G134400_v2.0.a1
pyrus_communis	pycom03g10280 pycom11g14010
rosa_chinensis	RchiOBHm_Chr5g0046601 RchiOBHm_Chr5g0046631
rosa_laevigata	RLG00000034423 RLG00000034425
rosa_multiflora	Rmu_sc0003878.1_g000003 Rmu_sc0003878.1_g000016
rosa_roxburghii	Rroxscaffold_1G00034720 Rroxscaffold_1G00034750
rosa_rugosa	Rorug05G0229900 Rorug05G0230200
rosa_samantha	Rh5AG310400 Rh5BG318600 Rh5CG344500 Rh5DG329100
rosa_wichuraiana	Rw5G028930 Rw5G028960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	543
AccII	CGCG	1 cut(s)	111
AciI	CCGC	4 cut(s)	109, 170, 548, 561
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	488, 667
AcuI	CTGAAG	1 cut(s)	63
AcyI	GRCGYC	1 cut(s)	544
AfaI	GTAC	3 cut(s)	404, 460, 509
AfiI	CCNNNNNNNGG	6 cut(s)	20, 147, 198, 259, 480, 554
AgsI	TTSAA	3 cut(s)	416, 666, 731
AhlI	ACTAGT	1 cut(s)	443
AjnI	CCWGG	2 cut(s)	292, 618
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
AluBI	AGCT	9 cut(s)	154, 175, 365, 428, 437, 464, 648, 683, 757
AluI	AGCT	9 cut(s)	154, 175, 365, 428, 437, 464, 648, 683, 757
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	4 cut(s)	61, 180, 238, 692
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	528
ApeKI	GCWGC	4 cut(s)	167, 220, 425, 754
ApoI	RAATTY	2 cut(s)	488, 667
AspLEI	GCGC	2 cut(s)	235, 546
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	608
AvaI	CYCGRG	1 cut(s)	528
BanI	GGYRCC	1 cut(s)	543
BanII	GRGCYC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	156
BbvCI	CCTCAGC	1 cut(s)	433
BbvI	GCAGC	4 cut(s)	179, 232, 437, 766
BceAI	ACGGC	2 cut(s)	165, 276
BciT130I	CCWGG	2 cut(s)	294, 620
BcnI	CCSGG	1 cut(s)	503
BcoDI	GTCTC	4 cut(s)	61, 180, 238, 692
BcuI	ACTAGT	1 cut(s)	443
BfaI	CTAG	3 cut(s)	444, 456, 551
BfoI	RGCGCY	1 cut(s)	547
BisI	GCNGC	5 cut(s)	109, 168, 221, 426, 755
BlsI	GCNGC	5 cut(s)	110, 169, 222, 427, 756
Bme1390I	CCNGG	3 cut(s)	294, 503, 620
BmeT110I	CYCGRG	1 cut(s)	528
BmiI	GGNNCC	1 cut(s)	545
BmrFI	CCNGG	3 cut(s)	294, 503, 620
BmsI	GCATC	1 cut(s)	578
BplI	GAGNNNNNCTC	2 cut(s)	672, 704
Bpu10I	CCTNAGC	1 cut(s)	433
BpuMI	CCSGG	1 cut(s)	503
BsaBI	GATNNNNATC	1 cut(s)	723
BsaHI	GRCGYC	1 cut(s)	544
BsaI	GGTCTC	1 cut(s)	238
BsaJI	CCNNGG	6 cut(s)	146, 181, 215, 293, 309, 342
BsaWI	WCCGGW	1 cut(s)	252
BsaXI	ACNNNNNCTCC	4 cut(s)	274, 304, 412, 442
Bsc4I	CCNNNNNNNGG	6 cut(s)	20, 147, 198, 259, 480, 554
Bse1I	ACTGG	2 cut(s)	278, 289
Bse8I	GATNNNNATC	1 cut(s)	723
BseBI	CCWGG	2 cut(s)	294, 620
BseDI	CCNNGG	6 cut(s)	146, 181, 215, 293, 309, 342
BseGI	GGATG	2 cut(s)	114, 724
BseJI	GATNNNNATC	1 cut(s)	723
BseLI	CCNNNNNNNGG	6 cut(s)	20, 147, 198, 259, 480, 554
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	2 cut(s)	278, 289
BseRI	GAGGAG	2 cut(s)	59, 298
BseXI	GCAGC	4 cut(s)	179, 232, 437, 766
Bsh1236I	CGCG	1 cut(s)	111
BshNI	GGYRCC	1 cut(s)	543
BsiHKAI	GWGCWC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	528
BsiSI	CCGG	2 cut(s)	253, 502
BslI	CCNNNNNNNGG	6 cut(s)	20, 147, 198, 259, 480, 554
BsmAI	GTCTC	4 cut(s)	61, 180, 238, 692
BsmBI	CGTCTC	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	102
Bso31I	GGTCTC	1 cut(s)	238
BsoBI	CYCGRG	1 cut(s)	528
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp1407I	TGTACA	1 cut(s)	507
Bsp143I	GATC	4 cut(s)	4, 676, 685, 724
Bsp19I	CCATGG	2 cut(s)	146, 342
BspACI	CCGC	4 cut(s)	109, 170, 548, 561
BspCNI	CTCAG	1 cut(s)	446
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	545
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	543
BspTNI	GGTCTC	1 cut(s)	238
BsrGI	TGTACA	1 cut(s)	507
BsrI	ACTGG	2 cut(s)	278, 289
BssECI	CCNNGG	6 cut(s)	146, 181, 215, 293, 309, 342
BssMI	GATC	4 cut(s)	4, 676, 685, 724
BssNI	GRCGYC	1 cut(s)	544
BssT1I	CCWWGG	2 cut(s)	146, 342
Bst2UI	CCWGG	2 cut(s)	294, 620
Bst4CI	ACNGT	1 cut(s)	498
BstACI	GRCGYC	1 cut(s)	544
BstAUI	TGTACA	1 cut(s)	507
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	1 cut(s)	433
BstDSI	CCRYGG	3 cut(s)	146, 181, 342
BstF5I	GGATG	2 cut(s)	114, 724
BstFNI	CGCG	1 cut(s)	111
BstH2I	RGCGCY	1 cut(s)	547
BstHHI	GCGC	2 cut(s)	235, 546
BstKTI	GATC	4 cut(s)	7, 679, 688, 727
BstMAI	GTCTC	4 cut(s)	61, 180, 238, 692
BstMBI	GATC	4 cut(s)	4, 676, 685, 724
BstMWI	GCNNNNNNNGC	5 cut(s)	108, 151, 220, 434, 461
BstNI	CCWGG	2 cut(s)	294, 620
BstSCI	CCNGG	3 cut(s)	292, 501, 618
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	4 cut(s)	179, 232, 437, 766
BtgI	CCRYGG	3 cut(s)	146, 181, 342
BtsCI	GGATG	2 cut(s)	114, 724
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	548
CfoI	GCGC	2 cut(s)	235, 546
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	403, 459, 508
CviAII	CATG	3 cut(s)	147, 343, 485
CviQI	GTAC	3 cut(s)	403, 459, 508
DdeI	CTNAG	1 cut(s)	433
DinI	GGCGCC	1 cut(s)	545
DpnI	GATC	4 cut(s)	6, 678, 687, 726
DpnII	GATC	4 cut(s)	4, 676, 685, 724
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	146, 342
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	238
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	528
EcoICRI	GAGCTC	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	488
EcoRII	CCWGG	2 cut(s)	292, 618
EcoT14I	CCWWGG	2 cut(s)	146, 342
EcoT38I	GRGCYC	1 cut(s)	156
EgeI	GGCGCC	1 cut(s)	545
EheI	GGCGCC	1 cut(s)	545
ErhI	CCWWGG	2 cut(s)	146, 342
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	3 cut(s)	150, 346, 488
FaiI	YATR	8 cut(s)	148, 165, 212, 300, 344, 486, 512, 742
FalI	AAGNNNNNCTT	2 cut(s)	592, 624
FatI	CATG	3 cut(s)	146, 342, 484
FauI	CCCGC	1 cut(s)	555
Fnu4HI	GCNGC	5 cut(s)	109, 168, 221, 426, 755
FokI	GGATG	2 cut(s)	101, 731
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	5 cut(s)	109, 168, 221, 426, 755
FspBI	CTAG	3 cut(s)	444, 456, 551
GlaI	GCGC	2 cut(s)	234, 545
GluI	GCNGC	5 cut(s)	109, 168, 221, 426, 755
HaeII	RGCGCY	1 cut(s)	547
HapII	CCGG	2 cut(s)	253, 502
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	2 cut(s)	235, 546
Hin1I	GRCGYC	1 cut(s)	544
Hin1II	CATG	3 cut(s)	150, 346, 488
Hin6I	GCGC	2 cut(s)	233, 544
HinP1I	GCGC	2 cut(s)	233, 544
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	2 cut(s)	253, 502
HphI	GGTGA	1 cut(s)	608
Hpy166II	GTNNAC	2 cut(s)	304, 508
Hpy188I	TCNGA	4 cut(s)	313, 369, 494, 655
Hpy188III	TCNNGA	2 cut(s)	528, 672
Hpy8I	GTNNAC	2 cut(s)	304, 508
Hpy99I	CGWCG	1 cut(s)	373
HpyAV	CCTTC	3 cut(s)	70, 271, 548
HpyCH4III	ACNGT	1 cut(s)	498
HpyCH4V	TGCA	1 cut(s)	167
HpyF10VI	GCNNNNNNNGC	5 cut(s)	108, 151, 220, 434, 461
HpyF3I	CTNAG	1 cut(s)	433
Hsp92I	GRCGYC	1 cut(s)	544
Hsp92II	CATG	3 cut(s)	150, 346, 488
HspAI	GCGC	2 cut(s)	233, 544
KasI	GGCGCC	1 cut(s)	543
Kzo9I	GATC	4 cut(s)	4, 676, 685, 724
LmnI	GCTCC	6 cut(s)	151, 159, 172, 370, 433, 751
Lsp1109I	GCAGC	4 cut(s)	179, 232, 437, 766
LweI	GCATC	1 cut(s)	578
MaeI	CTAG	3 cut(s)	444, 456, 551
MalI	GATC	4 cut(s)	6, 678, 687, 726
MboI	GATC	4 cut(s)	4, 676, 685, 724
MboII	GAAGA	8 cut(s)	56, 59, 196, 387, 403, 428, 600, 719
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	2 cut(s)	488, 667
Mly113I	GGCGCC	1 cut(s)	544
MmeI	TCCRAC	2 cut(s)	392, 517
MnlI	CCTC	8 cut(s)	77, 80, 210, 223, 319, 442, 474, 747
MseI	TTAA	1 cut(s)	590
MslI	CAYNNNNRTG	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	2 cut(s)	253, 502
MspR9I	CCNGG	3 cut(s)	294, 503, 620
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	2 cut(s)	294, 620
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	5 cut(s)	108, 151, 220, 434, 461
NarI	GGCGCC	1 cut(s)	544
NciI	CCSGG	1 cut(s)	503
NcoI	CCATGG	2 cut(s)	146, 342
NdeII	GATC	4 cut(s)	4, 676, 685, 724
NlaIII	CATG	3 cut(s)	150, 346, 488
NlaIV	GGNNCC	1 cut(s)	545
NmeAIII	GCCGAG	1 cut(s)	240
PaeR7I	CTCGAG	1 cut(s)	528
PctI	GAATGC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	5 cut(s)	110, 169, 222, 427, 756
PluTI	GGCGCC	1 cut(s)	547
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	2 cut(s)	292, 618
PspGI	CCWGG	2 cut(s)	292, 618
PspN4I	GGNNCC	1 cut(s)	545
RsaI	GTAC	3 cut(s)	404, 460, 509
RsaNI	GTAC	3 cut(s)	403, 459, 508
RseI	CAYNNNNRTG	1 cut(s)	329
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	590
SatI	GCNGC	5 cut(s)	109, 168, 221, 426, 755
Sau3AI	GATC	4 cut(s)	4, 676, 685, 724
ScrFI	CCNGG	3 cut(s)	294, 503, 620
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	1 cut(s)	578
SfoI	GGCGCC	1 cut(s)	545
Sfr274I	CTCGAG	1 cut(s)	528
SlaI	CTCGAG	1 cut(s)	528
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	528
SmoI	CTYRAG	1 cut(s)	528
SpeI	ACTAGT	1 cut(s)	443
Sse9I	AATT	2 cut(s)	488, 667
SsiI	CCGC	4 cut(s)	109, 170, 548, 561
SspDI	GGCGCC	1 cut(s)	543
SspMI	CTAG	3 cut(s)	444, 456, 551
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	3 cut(s)	292, 501, 618
StyI	CCWWGG	2 cut(s)	146, 342
TaaI	ACNGT	1 cut(s)	498
TaqI	TCGA	4 cut(s)	81, 529, 577, 679
TasI	AATT	2 cut(s)	488, 667
TatI	WGTACW	3 cut(s)	402, 458, 507
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	590
Tru9I	TTAA	1 cut(s)	590
TscAI	CASTG	1 cut(s)	203
TseI	GCWGC	4 cut(s)	167, 220, 425, 754
TspDTI	ATGAA	3 cut(s)	410, 501, 600
TspRI	CASTG	1 cut(s)	203
XapI	RAATTY	2 cut(s)	488, 667
XhoI	CTCGAG	1 cut(s)	528
XspI	CTAG	3 cut(s)	444, 456, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.