Rh5CG344500
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0007123
Physical Location & Seq
Reverse (-)
39643570 .. 39695833
52264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG344500.1

Sequence Viewer

Length: 777 bp
ATGCATCAAGCACCCACAACTGGCTTTCGTTTCTACCCAACTGAAGAAGAACTCATCTCCTTCTACCTCCTCAACAAGCTCGAATCCAAGAACCAAGACAGCATTCGCCGCGTCATCCCAGACCTTGACATTTACAGCACCGAGCCATGGGAGCTCCCAAATTATGCAGCGGAGCTGTGCCGTGGAGACACCGAGCAGTGGTTCTTCTTTACGCCGAGGCAGCAACGAGAAGCGCAAGGTGGGAGACCTAACCGGACTACGGCTTCCGGCTACTGGAAGGCAACTGGCTCGCCTGGCTATGTTTACTCCTCGGATAATCGGGTCATTGGAGTGAAGAAAACCATGGTTTTCTACAAAGGGAAAGCTCCAACTGGAAGAAAGACCAAGTGGAAGATGAATGAGTACAGAGCCATTGAAGAAACAGCAGGCCCCTCAGCTACCACTAGTAACAGTGCCAGTACTGCTATCATTCCCAAGTTGAGGCATGAATTCCGACTGTGCCGGGTGTACATAGTATCGGGGAGTTCTCGAGCATTTGACAGGCGTCCGCTGGAAGGAAGCGGAGATGCATCACATCGACGAAGTGATTTAACGGGGACAAGTGCTTCTTCATCTCACCAGGCAGCAATAGTAACAGAGAAAACAAGCTCATCATCGGATACTCATTCAAATTCAGGAGACCTAGCTGATTTCCAAGCAGGGAATAATAATGATTGGGAAATGAATGATGATCTTCAACAACCTCTATGGGAATGGGAGCAGCTAATCTTACTCTAA

Protein Analysis

258

Amino Acids

29.17

Weight (kDa)

6.54

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 136 1.2e-40 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 111
AciI CCGC 4 cut(s) 109, 170, 548, 561
AcsI RAATTY 2 cut(s) 488, 670
AcuI CTGAAG 1 cut(s) 63
AcyI GRCGYC 1 cut(s) 544
AfaI GTAC 3 cut(s) 404, 460, 509
AfiI CCNNNNNNNGG 7 cut(s) 20, 147, 198, 259, 273, 480, 554
AgsI TTSAA 3 cut(s) 416, 669, 737
AhlI ACTAGT 1 cut(s) 443
AjnI CCWGG 2 cut(s) 292, 618
AjuI GAANNNNNNNTTGG 2 cut(s) 87, 119
AluBI AGCT 8 cut(s) 79, 154, 175, 365, 437, 648, 686, 763
AluI AGCT 8 cut(s) 79, 154, 175, 365, 437, 648, 686, 763
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 3 cut(s) 180, 238, 672
Ama87I CYCGRG 1 cut(s) 528
AoxI GGCC 1 cut(s) 427
ApeKI GCWGC 4 cut(s) 167, 220, 623, 760
ApoI RAATTY 2 cut(s) 488, 670
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 428
AsuC2I CCSGG 1 cut(s) 503
AsuHPI GGTGA 1 cut(s) 608
AvaI CYCGRG 1 cut(s) 528
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 433
BbvI GCAGC 4 cut(s) 179, 232, 635, 772
BceAI ACGGC 2 cut(s) 165, 276
BcgI CGANNNNNNTGC 2 cut(s) 270, 304
BciT130I CCWGG 2 cut(s) 294, 620
BciVI GTATCC 1 cut(s) 652
BcnI CCSGG 1 cut(s) 503
BcoDI GTCTC 3 cut(s) 180, 238, 672
BcuI ACTAGT 1 cut(s) 443
BfaI CTAG 2 cut(s) 444, 683
BfuI GTATCC 1 cut(s) 652
BisI GCNGC 5 cut(s) 109, 168, 221, 624, 761
BlsI GCNGC 5 cut(s) 110, 169, 222, 625, 762
BmcAI AGTACT 1 cut(s) 460
Bme1390I CCNGG 3 cut(s) 294, 503, 620
BmeT110I CYCGRG 1 cut(s) 528
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 1 cut(s) 430
BmrFI CCNGG 3 cut(s) 294, 503, 620
BmsI GCATC 3 cut(s) 13, 556, 578
BoxI GACNNNNGTC 1 cut(s) 543
Bpu10I CCTNAGC 1 cut(s) 433
BpuMI CCSGG 1 cut(s) 503
BsaHI GRCGYC 1 cut(s) 544
BsaI GGTCTC 2 cut(s) 238, 672
BsaJI CCNNGG 5 cut(s) 146, 181, 215, 309, 342
BsaWI WCCGGW 1 cut(s) 252
Bsc4I CCNNNNNNNGG 7 cut(s) 20, 147, 198, 259, 273, 480, 554
Bse1I ACTGG 5 cut(s) 25, 278, 289, 376, 456
BseBI CCWGG 2 cut(s) 294, 620
BseDI CCNNGG 5 cut(s) 146, 181, 215, 309, 342
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 7 cut(s) 20, 147, 198, 259, 273, 480, 554
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 5 cut(s) 25, 278, 289, 376, 456
BseRI GAGGAG 2 cut(s) 59, 298
BseXI GCAGC 4 cut(s) 179, 232, 635, 772
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 528
BsiSI CCGG 3 cut(s) 253, 267, 502
BslFI GGGAC 1 cut(s) 610
BslI CCNNNNNNNGG 7 cut(s) 20, 147, 198, 259, 273, 480, 554
BsmAI GTCTC 3 cut(s) 180, 238, 672
BsmFI GGGAC 1 cut(s) 610
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 1 cut(s) 429
Bso31I GGTCTC 2 cut(s) 238, 672
BsoBI CYCGRG 1 cut(s) 528
Bsp1286I GDGCHC 1 cut(s) 156
Bsp1407I TGTACA 1 cut(s) 507
Bsp143I GATC 1 cut(s) 730
Bsp19I CCATGG 2 cut(s) 146, 342
BspACI CCGC 4 cut(s) 109, 170, 548, 561
BspANI GGCC 1 cut(s) 429
BspCNI CTCAG 1 cut(s) 446
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 430
BspTNI GGTCTC 2 cut(s) 238, 672
BsrGI TGTACA 1 cut(s) 507
BsrI ACTGG 5 cut(s) 25, 278, 289, 376, 456
BssECI CCNNGG 5 cut(s) 146, 181, 215, 309, 342
BssMI GATC 1 cut(s) 730
BssNI GRCGYC 1 cut(s) 544
BssT1I CCWWGG 2 cut(s) 146, 342
Bst2UI CCWGG 2 cut(s) 294, 620
Bst4CI ACNGT 2 cut(s) 452, 498
BstACI GRCGYC 1 cut(s) 544
BstAUI TGTACA 1 cut(s) 507
BstC8I GCNNGC 2 cut(s) 290, 427
BstDEI CTNAG 1 cut(s) 433
BstDSI CCRYGG 3 cut(s) 146, 181, 342
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 111
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 1 cut(s) 733
BstMAI GTCTC 3 cut(s) 180, 238, 672
BstMBI GATC 1 cut(s) 730
BstMWI GCNNNNNNNGC 5 cut(s) 108, 151, 220, 294, 461
BstNI CCWGG 2 cut(s) 294, 620
BstPAI GACNNNNGTC 1 cut(s) 543
BstSCI CCNGG 3 cut(s) 292, 501, 618
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 4 cut(s) 179, 232, 635, 772
BsuI GTATCC 1 cut(s) 652
BsuRI GGCC 1 cut(s) 429
BtgI CCRYGG 3 cut(s) 146, 181, 342
BtsCI GGATG 1 cut(s) 114
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 2 cut(s) 203, 457
Cac8I GCNNGC 2 cut(s) 290, 427
CfoI GCGC 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 428
CseI GACGC 2 cut(s) 100, 533
Csp6I GTAC 3 cut(s) 403, 459, 508
CviAII CATG 3 cut(s) 147, 343, 485
CviQI GTAC 3 cut(s) 403, 459, 508
DdeI CTNAG 1 cut(s) 433
DpnI GATC 1 cut(s) 732
DpnII GATC 1 cut(s) 730
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 2 cut(s) 146, 342
Eco24I GRGCYC 1 cut(s) 156
Eco31I GGTCTC 2 cut(s) 238, 672
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 63
Eco88I CYCGRG 1 cut(s) 528
EcoICRI GAGCTC 1 cut(s) 154
EcoO109I RGGNCCY 1 cut(s) 428
EcoRI GAATTC 1 cut(s) 488
EcoRII CCWGG 2 cut(s) 292, 618
EcoT14I CCWWGG 2 cut(s) 146, 342
EcoT22I ATGCAT 2 cut(s) 6, 571
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 2 cut(s) 146, 342
FaeI CATG 3 cut(s) 150, 346, 488
FaiI YATR 7 cut(s) 148, 165, 300, 344, 486, 512, 748
FalI AAGNNNNNCTT 2 cut(s) 592, 624
FaqI GGGAC 1 cut(s) 610
FatI CATG 3 cut(s) 146, 342, 484
Fnu4HI GCNGC 5 cut(s) 109, 168, 221, 624, 761
FokI GGATG 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 5 cut(s) 109, 168, 221, 624, 761
FspBI CTAG 2 cut(s) 444, 683
GlaI GCGC 1 cut(s) 234
GluI GCNGC 5 cut(s) 109, 168, 221, 624, 761
HaeIII GGCC 1 cut(s) 429
HapII CCGG 3 cut(s) 253, 267, 502
HgaI GACGC 2 cut(s) 100, 533
HhaI GCGC 1 cut(s) 235
Hin1I GRCGYC 1 cut(s) 544
Hin1II CATG 3 cut(s) 150, 346, 488
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HinfI GANTC 1 cut(s) 83
HpaII CCGG 3 cut(s) 253, 267, 502
HphI GGTGA 1 cut(s) 608
Hpy166II GTNNAC 2 cut(s) 304, 508
Hpy188I TCNGA 3 cut(s) 313, 494, 658
Hpy188III TCNNGA 2 cut(s) 528, 675
Hpy8I GTNNAC 2 cut(s) 304, 508
Hpy99I CGWCG 1 cut(s) 582
HpyAV CCTTC 3 cut(s) 70, 271, 548
HpyCH4III ACNGT 2 cut(s) 452, 498
HpyCH4V TGCA 3 cut(s) 4, 167, 569
HpyF10VI GCNNNNNNNGC 5 cut(s) 108, 151, 220, 294, 461
HpyF3I CTNAG 1 cut(s) 433
Hsp92I GRCGYC 1 cut(s) 544
Hsp92II CATG 3 cut(s) 150, 346, 488
HspAI GCGC 1 cut(s) 233
Kzo9I GATC 1 cut(s) 730
LmnI GCTCC 5 cut(s) 151, 159, 172, 370, 757
Lsp1109I GCAGC 4 cut(s) 179, 232, 635, 772
LweI GCATC 3 cut(s) 13, 556, 578
MaeI CTAG 2 cut(s) 444, 683
MaeIII GTNAC 2 cut(s) 446, 631
MalI GATC 1 cut(s) 732
MboI GATC 1 cut(s) 730
MboII GAAGA 9 cut(s) 56, 59, 196, 346, 387, 403, 428, 600, 725
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 3 cut(s) 160, 488, 670
MmeI TCCRAC 2 cut(s) 392, 517
MnlI CCTC 7 cut(s) 77, 80, 210, 319, 442, 474, 753
Mph1103I ATGCAT 2 cut(s) 6, 571
MseI TTAA 1 cut(s) 590
MslI CAYNNNNRTG 1 cut(s) 329
MspA1I CMGCKG 2 cut(s) 170, 550
MspI CCGG 3 cut(s) 253, 267, 502
MspR9I CCNGG 3 cut(s) 294, 503, 620
Mva1269I GAATGC 1 cut(s) 102
MvaI CCWGG 2 cut(s) 294, 620
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 5 cut(s) 108, 151, 220, 294, 461
NciI CCSGG 1 cut(s) 503
NcoI CCATGG 2 cut(s) 146, 342
NdeII GATC 1 cut(s) 730
NlaIII CATG 3 cut(s) 150, 346, 488
NlaIV GGNNCC 1 cut(s) 430
NmeAIII GCCGAG 1 cut(s) 240
NsiI ATGCAT 2 cut(s) 6, 571
PaeR7I CTCGAG 1 cut(s) 528
PctI GAATGC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 5 cut(s) 110, 169, 222, 625, 762
PshAI GACNNNNGTC 1 cut(s) 543
Psp124BI GAGCTC 1 cut(s) 156
Psp6I CCWGG 2 cut(s) 292, 618
PspGI CCWGG 2 cut(s) 292, 618
PspN4I GGNNCC 1 cut(s) 430
PspPI GGNCC 1 cut(s) 428
RsaI GTAC 3 cut(s) 404, 460, 509
RsaNI GTAC 3 cut(s) 403, 459, 508
RseI CAYNNNNRTG 1 cut(s) 329
SacI GAGCTC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 590
SatI GCNGC 5 cut(s) 109, 168, 221, 624, 761
Sau3AI GATC 1 cut(s) 730
Sau96I GGNCC 1 cut(s) 428
ScaI AGTACT 1 cut(s) 460
ScrFI CCNGG 3 cut(s) 294, 503, 620
SduI GDGCHC 1 cut(s) 156
SfaNI GCATC 3 cut(s) 13, 556, 578
Sfr274I CTCGAG 1 cut(s) 528
SlaI CTCGAG 1 cut(s) 528
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 528
SmoI CTYRAG 1 cut(s) 528
SpeI ACTAGT 1 cut(s) 443
Sse9I AATT 3 cut(s) 160, 488, 670
SsiI CCGC 4 cut(s) 109, 170, 548, 561
SspMI CTAG 2 cut(s) 444, 683
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 3 cut(s) 292, 501, 618
StyI CCWWGG 2 cut(s) 146, 342
TaaI ACNGT 2 cut(s) 452, 498
TaqI TCGA 3 cut(s) 81, 529, 577
TasI AATT 3 cut(s) 160, 488, 670
TatI WGTACW 3 cut(s) 402, 458, 507
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 590
Tru9I TTAA 1 cut(s) 590
TscAI CASTG 2 cut(s) 203, 457
TseI GCWGC 4 cut(s) 167, 220, 623, 760
TspDTI ATGAA 4 cut(s) 410, 501, 600, 737
TspRI CASTG 2 cut(s) 203, 457
XapI RAATTY 2 cut(s) 488, 670
XhoI CTCGAG 1 cut(s) 528
XspI CTAG 2 cut(s) 444, 683
ZrmI AGTACT 1 cut(s) 460
Zsp2I ATGCAT 2 cut(s) 6, 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.