Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013081

Physical Location & Seq

Genomic Coordinates Forward (+)

16896166 .. 16897308

Gene Structure 1143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G45970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGAAGCTTTCTCTTCCTCATCGTAGTCATCTTCCTCTTCTCTTCATCCGTTAACGCTTGTGATCGATGTCTTCACCGTTCTAAAGCAGCTTATTTCTCCTCTGCCTCTGCTCTCTCTTCTGGAGCTTGTGCTTATGGCTCTATGGCTACGAGTTTCTTCGCCGGACATATCGCTGCAGCTATCCCTTCTATCTACAAAGACGGTGCTGGCTGTGGAGCTTGCTTTCAAGTCAGATGCAAGAACCCTAAGCTGTGTAGCACTAAAGGAACCATTGTGATGATCACAGACTTAAACAAGAGTAACCAAACCGATCTTGTCCTTAGTAGCAGAGCTTTTAGAGCTATGGCTAAACCTATTGTTGGTGCTGACAAAGACCTTCTCAAACAAGGCATTGTCGACATCGAATACCAAAGAGTTCCTTGCGATTACGGCAACAAGAACATGAACGTGAGAGTAGAAGAAGCAAGCAAGAAACCAAACTACTTAGAGATAAAGCTTTTATACCAAGGAGGTCAAACAGAAGTAGTATCCATCGACATTGCTCAAGTCGGTTCATCGCCAAATTGGGGTTACATGACAAGAAGCCACGGAGCTGTTTGGGTAACTGACAAAGTACCCACCGGAGCTATCCAGTTCAGGTTCGTAGTAACCGGTGGATACGACGGTAAAATGATTTGGTCACAGAGTGTTCTTCCATCCAATTGGGAAGCTGGGAAAATTTACGACGCCGGTGTTCAAATCACTGACATTGCTCAAGAAGGTTGTGATCCTTGCGATGCTCACATCTGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

265

Amino Acids

28.7

Weight (kDa)

8.28

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	32 - 110	4.8e-14	Lytic transglycolase
Expansin_C	PF01357	123 - 206	4.6e-16	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45970 AT3G45970 AT4G38400
fragaria_vesca	FvH4_2g16110
malus_domestica	MD05G1130300.v1.1 MD10G1133200.v1.1
prunus_persica	Prupe.8G174500_v2.0.a1
pyrus_communis	pycom05g12690 pycom10g11500
rosa_chinensis	RchiOBHm_Chr6g0279781
rosa_laevigata	RLG00000013120
rosa_multiflora	Rmu_sc0001719.1_g000021
rosa_roxburghii	Rroxscaffold_7G00188660
rosa_rugosa	Rorug06G0128000
rosa_samantha	Rh6AG236200 Rh6BG240400 Rh6DG234100
rosa_wichuraiana	Rw6G020590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	399
AclWI	GGATC	1 cut(s)	764
AcsI	RAATTY	1 cut(s)	720
AcyI	GRCGYC	1 cut(s)	729
AdeI	CACNNNGTG	1 cut(s)	689
AfaI	GTAC	1 cut(s)	618
AfiI	CCNNNNNNNGG	2 cut(s)	362, 569
AgeI	ACCGGT	1 cut(s)	653
AgsI	TTSAA	2 cut(s)	230, 740
AlwI	GGATC	1 cut(s)	764
ApeKI	GCWGC	3 cut(s)	89, 176, 179
ApoI	RAATTY	1 cut(s)	720
AsiGI	ACCGGT	1 cut(s)	653
AsuHPI	GGTGA	1 cut(s)	68
BaeI	ACNNNNGTAYC	2 cut(s)	652, 685
BbsI	GAAGAC	1 cut(s)	65
BbvI	GCAGC	3 cut(s)	101, 163, 191
BccI	CCATC	2 cut(s)	542, 706
BceAI	ACGGC	1 cut(s)	448
BciVI	GTATCC	2 cut(s)	541, 653
BclI	TGATCA	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	177
BfuI	GTATCC	2 cut(s)	541, 653
BisI	GCNGC	3 cut(s)	90, 177, 180
BlsI	GCNGC	3 cut(s)	91, 178, 181
BmiI	GGNNCC	1 cut(s)	271
BmsI	GCATC	2 cut(s)	227, 769
BpiI	GAAGAC	1 cut(s)	65
BpmI	CTGGAG	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	2 cut(s)	531, 741
Bsa29I	ATCGAT	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	729
BsaJI	CCNNGG	2 cut(s)	508, 589
BsaWI	WCCGGW	2 cut(s)	623, 653
Bsc4I	CCNNNNNNNGG	2 cut(s)	362, 569
Bse118I	RCCGGY	2 cut(s)	653, 731
Bse1I	ACTGG	1 cut(s)	634
Bse3DI	GCAATG	2 cut(s)	540, 750
BseCI	ATCGAT	1 cut(s)	67
BseDI	CCNNGG	2 cut(s)	508, 589
BseGI	GGATG	2 cut(s)	47, 698
BseLI	CCNNNNNNNGG	2 cut(s)	362, 569
BseMI	GCAATG	2 cut(s)	540, 750
BseNI	ACTGG	1 cut(s)	634
BseRI	GAGGAG	1 cut(s)	91
BseXI	GCAGC	3 cut(s)	101, 163, 191
BseYI	CCCAGC	1 cut(s)	713
BshTI	ACCGGT	1 cut(s)	653
BshVI	ATCGAT	1 cut(s)	67
BsiSI	CCGG	4 cut(s)	165, 624, 654, 732
BslI	CCNNNNNNNGG	2 cut(s)	362, 569
Bsp143I	GATC	4 cut(s)	64, 282, 313, 769
BspDI	ATCGAT	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	271
BspMAI	CTGCAG	1 cut(s)	181
BspPI	GGATC	1 cut(s)	764
BsrDI	GCAATG	2 cut(s)	540, 750
BsrFI	RCCGGY	2 cut(s)	653, 731
BsrI	ACTGG	1 cut(s)	634
BssAI	RCCGGY	2 cut(s)	653, 731
BssECI	CCNNGG	2 cut(s)	508, 589
BssMI	GATC	4 cut(s)	64, 282, 313, 769
BssNI	GRCGYC	1 cut(s)	729
BssT1I	CCWWGG	1 cut(s)	508
Bst4CI	ACNGT	3 cut(s)	80, 206, 668
Bst6I	CTCTTC	4 cut(s)	20, 44, 49, 124
BstACI	GRCGYC	1 cut(s)	729
BstC8I	GCNNGC	3 cut(s)	211, 223, 469
BstDEI	CTNAG	3 cut(s)	249, 323, 487
BstDSI	CCRYGG	1 cut(s)	589
BstF5I	GGATG	2 cut(s)	47, 698
BstKTI	GATC	4 cut(s)	67, 285, 316, 772
BstMBI	GATC	4 cut(s)	64, 282, 313, 769
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 432
BstSFI	CTRYAG	1 cut(s)	177
BstV1I	GCAGC	3 cut(s)	101, 163, 191
BstV2I	GAAGAC	1 cut(s)	65
BstXI	CCANNNNNNTGG	1 cut(s)	705
Bsu15I	ATCGAT	1 cut(s)	67
BsuI	GTATCC	2 cut(s)	541, 653
BsuTUI	ATCGAT	1 cut(s)	67
BtgI	CCRYGG	1 cut(s)	589
BtgZI	GCGATG	2 cut(s)	543, 792
BtsCI	GGATG	2 cut(s)	47, 698
BtsIMutI	CAGTG	1 cut(s)	744
Cac8I	GCNNGC	3 cut(s)	211, 223, 469
Cfr10I	RCCGGY	2 cut(s)	653, 731
ClaI	ATCGAT	1 cut(s)	67
CseI	GACGC	1 cut(s)	737
Csp6I	GTAC	1 cut(s)	617
CspAI	ACCGGT	1 cut(s)	653
CviAII	CATG	2 cut(s)	445, 577
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	3 cut(s)	249, 323, 487
DpnI	GATC	4 cut(s)	66, 284, 315, 771
DpnII	GATC	4 cut(s)	64, 282, 313, 769
DraIII	CACNNNGTG	1 cut(s)	689
Eam1104I	CTCTTC	4 cut(s)	20, 44, 49, 124
EarI	CTCTTC	4 cut(s)	20, 44, 49, 124
Eco130I	CCWWGG	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	2 cut(s)	448, 580
FaiI	YATR	7 cut(s)	138, 146, 171, 347, 446, 505, 578
FalI	AAGNNNNNCTT	2 cut(s)	406, 438
FatI	CATG	2 cut(s)	444, 576
FbaI	TGATCA	1 cut(s)	282
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	3 cut(s)	90, 177, 180
FokI	GGATG	2 cut(s)	34, 685
Fsp4HI	GCNGC	3 cut(s)	90, 177, 180
GluI	GCNGC	3 cut(s)	90, 177, 180
GsaI	CCCAGC	1 cut(s)	717
GsuI	CTGGAG	1 cut(s)	144
HapII	CCGG	4 cut(s)	165, 624, 654, 732
HgaI	GACGC	1 cut(s)	737
Hin1I	GRCGYC	1 cut(s)	729
Hin1II	CATG	2 cut(s)	448, 580
HincII	GTYRAC	2 cut(s)	55, 400
HindII	GTYRAC	2 cut(s)	55, 400
HindIII	AAGCTT	2 cut(s)	7, 497
HpaI	GTTAAC	1 cut(s)	55
HpaII	CCGG	4 cut(s)	165, 624, 654, 732
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	55, 400
Hpy188I	TCNGA	1 cut(s)	236
Hpy188III	TCNNGA	3 cut(s)	123, 758, 790
Hpy8I	GTNNAC	2 cut(s)	55, 400
Hpy99I	CGWCG	2 cut(s)	668, 731
HpyAV	CCTTC	3 cut(s)	198, 389, 755
HpyCH4III	ACNGT	3 cut(s)	80, 206, 668
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	2 cut(s)	179, 240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 432
HpyF3I	CTNAG	3 cut(s)	249, 323, 487
HpySE526I	ACGT	1 cut(s)	450
Hsp92I	GRCGYC	1 cut(s)	729
Hsp92II	CATG	2 cut(s)	448, 580
Ksp22I	TGATCA	1 cut(s)	282
KspAI	GTTAAC	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	64, 282, 313, 769
LmnI	GCTCC	4 cut(s)	125, 218, 593, 626
Lsp1109I	GCAGC	3 cut(s)	101, 163, 191
LweI	GCATC	2 cut(s)	227, 769
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	5 cut(s)	302, 572, 604, 649, 681
MalI	GATC	4 cut(s)	66, 284, 315, 771
MboI	GATC	4 cut(s)	64, 282, 313, 769
MboII	GAAGA	9 cut(s)	7, 25, 31, 36, 65, 111, 151, 473, 686
MfeI	CAATTG	1 cut(s)	703
MluCI	AATT	3 cut(s)	565, 703, 720
MnlI	CCTC	5 cut(s)	29, 47, 112, 118, 506
MseI	TTAA	2 cut(s)	54, 293
MslI	CAYNNNNRTG	2 cut(s)	278, 449
MspI	CCGG	4 cut(s)	165, 624, 654, 732
MunI	CAATTG	1 cut(s)	703
MwoI	GCNNNNNNNGC	2 cut(s)	341, 432
NdeII	GATC	4 cut(s)	64, 282, 313, 769
NlaIII	CATG	2 cut(s)	448, 580
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	681
PinAI	ACCGGT	1 cut(s)	653
PkrI	GCNGC	3 cut(s)	91, 178, 181
PspFI	CCCAGC	1 cut(s)	713
PspN4I	GGNNCC	1 cut(s)	271
PstI	CTGCAG	1 cut(s)	181
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
RseI	CAYNNNNRTG	2 cut(s)	278, 449
SalI	GTCGAC	1 cut(s)	398
SaqAI	TTAA	2 cut(s)	54, 293
SatI	GCNGC	3 cut(s)	90, 177, 180
Sau3AI	GATC	4 cut(s)	64, 282, 313, 769
SfaNI	GCATC	2 cut(s)	227, 769
SfcI	CTRYAG	1 cut(s)	177
SgrAI	CRCCGGYG	1 cut(s)	731
SmiMI	CAYNNNNRTG	2 cut(s)	278, 449
SmlI	CTYRAG	2 cut(s)	546, 756
SmoI	CTYRAG	2 cut(s)	546, 756
Sse9I	AATT	3 cut(s)	565, 703, 720
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	3 cut(s)	80, 206, 668
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	4 cut(s)	67, 399, 405, 537
TasI	AATT	3 cut(s)	565, 703, 720
Tru1I	TTAA	2 cut(s)	54, 293
Tru9I	TTAA	2 cut(s)	54, 293
TscAI	CASTG	1 cut(s)	751
TseFI	GTSAC	1 cut(s)	681
TseI	GCWGC	3 cut(s)	89, 176, 179
Tsp45I	GTSAC	1 cut(s)	681
TspDTI	ATGAA	3 cut(s)	36, 461, 546
TspGWI	ACGGA	2 cut(s)	40, 606
TspRI	CASTG	1 cut(s)	751
XapI	RAATTY	1 cut(s)	720
XmiI	GTMKAC	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.