Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013081

Physical Location & Seq

Genomic Coordinates Forward (+)

25467838 .. 25469783

Gene Structure 1946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1130300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTCTGTGTTTATTTGCTTCCTCTTCTTCTTCCTAATCTCCTCTGCAACCGCTTGTGATCGCTGTGTGAAGCAATCCAAGGCAGCCTTCTTCTCCAAATCCTCTGCACTTTCATCTGGGGCTTGTGGGTATGGCTCCTTGGCGTTGGGATTTAGTGGCGGACACCTTGCAGCTGGTGTTCCTTCCCTTTTCAAAGGTGGAGCTGGTTGTGGTGCATGCTTTCAGATAAGATGCAAGAACACAACTCTTTGTACAAAACAAGGGACTATAGTAACTTTGACTGATCTGAACCAAGGCAGCCAAACGGATTTTGTTCTCAGCAGCAGAGCTTTTGCGGCCATGGCTCAAAAGGGTTTGGGCCAAGACATTTTGCGACGTGGCATTGTGGATGTGGAGTATAAGAGAGTACCATGTGAGTACAAGAACCAAAATTTATCCTTACGTGTGGAAGAATCAAGCCAAAAGCCACATTACTTGGCAATCAAACTTTTGTACCAAGGTGGTCAGACAGAAATTGTAGGCATAGATGTTGCTCAGGTTGGATCTTCAAATTGGAGTTTCCTATCTCGAAACCACGGTGCGATCTGGGACACGAGTAGGGTTCCAGCTGGGGCGCTACAATTCCGGTTTGTGGTGACGGCTGGGTACGATGGGAAGACAGTTTGGGCACCGAATGTGCTTCCCGTTAACTGGAAGCCCGGGATGATATATGACACAAAGGTTCAAATCAGTGACATTGCACAAGAGGGTTGCTCTCACTGTGATCATGGGGGCTGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

261

Amino Acids

28.01

Weight (kDa)

8.95

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	57 - 133	9.8e-14	Lytic transglycolase
Expansin_C	PF01357	147 - 228	9.8e-18	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45970 AT3G45970 AT4G38400
fragaria_vesca	FvH4_2g16110
malus_domestica	MD05G1130300.v1.1 MD10G1133200.v1.1
prunus_persica	Prupe.8G174500_v2.0.a1
pyrus_communis	pycom05g12690 pycom10g11500
rosa_chinensis	RchiOBHm_Chr6g0279781
rosa_laevigata	RLG00000013120
rosa_multiflora	Rmu_sc0001719.1_g000021
rosa_roxburghii	Rroxscaffold_7G00188660
rosa_rugosa	Rorug06G0128000
rosa_samantha	Rh6AG236200 Rh6BG240400 Rh6DG234100
rosa_wichuraiana	Rw6G020590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	667
AciI	CCGC	3 cut(s)	51, 159, 335
AclWI	GGATC	1 cut(s)	550
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	430
AfaI	GTAC	5 cut(s)	253, 408, 419, 494, 647
AfiI	CCNNNNNNNGG	2 cut(s)	631, 690
AflIII	ACRYGT	1 cut(s)	442
AgsI	TTSAA	3 cut(s)	193, 549, 725
AjiI	CACGTC	1 cut(s)	377
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	4 cut(s)	173, 203, 329, 608
AluI	AGCT	4 cut(s)	173, 203, 329, 608
AlwI	GGATC	1 cut(s)	550
Ama87I	CYCGRG	1 cut(s)	698
AoxI	GGCC	2 cut(s)	336, 358
ApeKI	GCWGC	4 cut(s)	83, 170, 297, 321
ApoI	RAATTY	1 cut(s)	430
AspLEI	GCGC	1 cut(s)	616
AspS9I	GGNCC	1 cut(s)	358
AsuC2I	CCSGG	2 cut(s)	699, 700
AsuHPI	GGTGA	1 cut(s)	646
AvaI	CYCGRG	1 cut(s)	698
BaeGI	GKGCMC	1 cut(s)	670
BaeI	ACNNNNGTAYC	2 cut(s)	476, 509
BanI	GGYRCC	1 cut(s)	667
BauI	CACGAG	1 cut(s)	592
BbsI	GAAGAC	1 cut(s)	662
BbvI	GCAGC	4 cut(s)	95, 182, 309, 333
BccI	CCATC	1 cut(s)	644
BceAI	ACGGC	1 cut(s)	654
BclI	TGATCA	1 cut(s)	763
BcnI	CCSGG	2 cut(s)	699, 700
BfmI	CTRYAG	1 cut(s)	267
BfoI	RGCGCY	1 cut(s)	617
BisI	GCNGC	5 cut(s)	84, 171, 298, 322, 336
BlsI	GCNGC	5 cut(s)	85, 172, 299, 323, 337
Bme1390I	CCNGG	2 cut(s)	699, 700
BmeT110I	CYCGRG	1 cut(s)	698
BmgBI	CACGTC	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	3 cut(s)	136, 603, 669
BmrFI	CCNGG	2 cut(s)	699, 700
BmsI	GCATC	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	662
BplI	GAGNNNNNCTC	2 cut(s)	737, 769
Bpu10I	CCTNAGC	1 cut(s)	534
BpuMI	CCSGG	2 cut(s)	699, 700
BsaAI	YACGTR	1 cut(s)	443
BsaJI	CCNNGG	7 cut(s)	78, 138, 292, 339, 496, 574, 698
BsaWI	WCCGGW	1 cut(s)	624
Bsc4I	CCNNNNNNNGG	2 cut(s)	631, 690
Bse1I	ACTGG	1 cut(s)	695
Bse3DI	GCAATG	1 cut(s)	735
BseDI	CCNNGG	7 cut(s)	78, 138, 292, 339, 496, 574, 698
BseGI	GGATG	2 cut(s)	394, 708
BseLI	CCNNNNNNNGG	2 cut(s)	631, 690
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	2 cut(s)	331, 548
BseNI	ACTGG	1 cut(s)	695
BseRI	GAGGAG	1 cut(s)	31
BseSI	GKGCMC	1 cut(s)	670
BseXI	GCAGC	4 cut(s)	95, 182, 309, 333
BseYI	CCCAGC	2 cut(s)	608, 641
BsgI	GTGCAG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	338, 360
BshNI	GGYRCC	1 cut(s)	667
BsiHKCI	CYCGRG	1 cut(s)	698
BsiSI	CCGG	2 cut(s)	625, 699
BslFI	GGGAC	2 cut(s)	277, 602
BslI	CCNNNNNNNGG	2 cut(s)	631, 690
BsmFI	GGGAC	2 cut(s)	277, 602
BsnI	GGCC	2 cut(s)	338, 360
BsoBI	CYCGRG	1 cut(s)	698
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp1407I	TGTACA	1 cut(s)	251
Bsp143I	GATC	5 cut(s)	58, 283, 542, 582, 763
Bsp19I	CCATGG	1 cut(s)	339
BspACI	CCGC	3 cut(s)	51, 159, 335
BspANI	GGCC	2 cut(s)	338, 360
BspCNI	CTCAG	2 cut(s)	330, 547
BspLI	GGNNCC	3 cut(s)	136, 603, 669
BspPI	GGATC	1 cut(s)	550
BspT107I	GGYRCC	1 cut(s)	667
BsrDI	GCAATG	1 cut(s)	735
BsrGI	TGTACA	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	695
BssECI	CCNNGG	7 cut(s)	78, 138, 292, 339, 496, 574, 698
BssMI	GATC	5 cut(s)	58, 283, 542, 582, 763
BssSI	CACGAG	1 cut(s)	592
BssT1I	CCWWGG	5 cut(s)	78, 138, 292, 339, 496
Bst2BI	CACGAG	1 cut(s)	592
Bst4CI	ACNGT	3 cut(s)	578, 661, 761
Bst6I	CTCTTC	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	251
BstBAI	YACGTR	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	2 cut(s)	317, 534
BstDSI	CCRYGG	2 cut(s)	339, 574
BstF5I	GGATG	2 cut(s)	394, 708
BstH2I	RGCGCY	1 cut(s)	617
BstHHI	GCGC	1 cut(s)	616
BstKTI	GATC	5 cut(s)	61, 286, 545, 585, 766
BstMBI	GATC	5 cut(s)	58, 283, 542, 582, 763
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 341
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	2 cut(s)	697, 698
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	670
BstV1I	GCAGC	4 cut(s)	95, 182, 309, 333
BstV2I	GAAGAC	1 cut(s)	662
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
BsuRI	GGCC	2 cut(s)	338, 360
BtgI	CCRYGG	2 cut(s)	339, 574
BtrI	CACGTC	1 cut(s)	377
BtsCI	GGATG	2 cut(s)	394, 708
BtsIMutI	CAGTG	2 cut(s)	736, 757
Cac8I	GCNNGC	1 cut(s)	217
CfoI	GCGC	1 cut(s)	616
Cfr13I	GGNCC	1 cut(s)	358
Cfr9I	CCCGGG	1 cut(s)	698
Csp6I	GTAC	5 cut(s)	252, 407, 418, 493, 646
CspCI	CAANNNNNGTGG	2 cut(s)	456, 491
CviAII	CATG	4 cut(s)	216, 340, 411, 767
CviQI	GTAC	5 cut(s)	252, 407, 418, 493, 646
DdeI	CTNAG	2 cut(s)	317, 534
DpnI	GATC	5 cut(s)	60, 285, 544, 584, 765
DpnII	GATC	5 cut(s)	58, 283, 542, 582, 763
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
EciI	GGCGGA	1 cut(s)	174
Eco130I	CCWWGG	5 cut(s)	78, 138, 292, 339, 496
Eco88I	CYCGRG	1 cut(s)	698
EcoT14I	CCWWGG	5 cut(s)	78, 138, 292, 339, 496
ErhI	CCWWGG	5 cut(s)	78, 138, 292, 339, 496
FaeI	CATG	4 cut(s)	219, 343, 414, 770
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FaqI	GGGAC	2 cut(s)	277, 602
FatI	CATG	4 cut(s)	215, 339, 410, 766
FbaI	TGATCA	1 cut(s)	763
Fnu4HI	GCNGC	5 cut(s)	84, 171, 298, 322, 336
FokI	GGATG	2 cut(s)	401, 715
Fsp4HI	GCNGC	5 cut(s)	84, 171, 298, 322, 336
GlaI	GCGC	1 cut(s)	615
GluI	GCNGC	5 cut(s)	84, 171, 298, 322, 336
GsaI	CCCAGC	2 cut(s)	612, 645
HaeII	RGCGCY	1 cut(s)	617
HaeIII	GGCC	2 cut(s)	338, 360
HapII	CCGG	2 cut(s)	625, 699
HhaI	GCGC	1 cut(s)	616
Hin1II	CATG	4 cut(s)	219, 343, 414, 770
Hin6I	GCGC	1 cut(s)	614
HinP1I	GCGC	1 cut(s)	614
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HinfI	GANTC	1 cut(s)	452
HpaI	GTTAAC	1 cut(s)	688
HpaII	CCGG	2 cut(s)	625, 699
HphI	GGTGA	1 cut(s)	646
Hpy166II	GTNNAC	1 cut(s)	688
Hpy188I	TCNGA	3 cut(s)	225, 288, 507
Hpy188III	TCNNGA	1 cut(s)	567
Hpy8I	GTNNAC	1 cut(s)	688
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	2 cut(s)	97, 192
HpyCH4III	ACNGT	3 cut(s)	578, 661, 761
HpyCH4IV	ACGT	2 cut(s)	376, 442
HpyCH4V	TGCA	6 cut(s)	47, 107, 170, 215, 234, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 341
HpyF3I	CTNAG	2 cut(s)	317, 534
HpySE526I	ACGT	2 cut(s)	376, 442
Hsp92II	CATG	4 cut(s)	219, 343, 414, 770
HspAI	GCGC	1 cut(s)	614
Ksp22I	TGATCA	1 cut(s)	763
KspAI	GTTAAC	1 cut(s)	688
Kzo9I	GATC	5 cut(s)	58, 283, 542, 582, 763
LmnI	GCTCC	2 cut(s)	140, 200
Lsp1109I	GCAGC	4 cut(s)	95, 182, 309, 333
LweI	GCATC	1 cut(s)	221
MaeII	ACGT	2 cut(s)	376, 442
MaeIII	GTNAC	3 cut(s)	271, 634, 731
MalI	GATC	5 cut(s)	60, 285, 544, 584, 765
MboI	GATC	5 cut(s)	58, 283, 542, 582, 763
MboII	GAAGA	7 cut(s)	16, 19, 22, 82, 461, 537, 667
MflI	RGATCY	1 cut(s)	542
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	4 cut(s)	430, 513, 550, 620
MmeI	TCCRAC	1 cut(s)	520
MnlI	CCTC	4 cut(s)	32, 52, 112, 739
MseI	TTAA	1 cut(s)	687
MspA1I	CMGCKG	2 cut(s)	173, 608
MspI	CCGG	2 cut(s)	625, 699
MspR9I	CCNGG	2 cut(s)	699, 700
MwoI	GCNNNNNNNGC	2 cut(s)	335, 341
NciI	CCSGG	2 cut(s)	699, 700
NcoI	CCATGG	1 cut(s)	339
NdeII	GATC	5 cut(s)	58, 283, 542, 582, 763
NlaIII	CATG	4 cut(s)	219, 343, 414, 770
NlaIV	GGNNCC	3 cut(s)	136, 603, 669
NmuCI	GTSAC	2 cut(s)	634, 731
NspI	RCATGY	1 cut(s)	219
PaeI	GCATGC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	452
PkrI	GCNGC	5 cut(s)	85, 172, 299, 323, 337
Ppu21I	YACGTR	1 cut(s)	443
PspFI	CCCAGC	2 cut(s)	608, 641
PspN4I	GGNNCC	3 cut(s)	136, 603, 669
PspPI	GGNCC	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	542
PvuII	CAGCTG	2 cut(s)	173, 608
RsaI	GTAC	5 cut(s)	253, 408, 419, 494, 647
RsaNI	GTAC	5 cut(s)	252, 407, 418, 493, 646
SaqAI	TTAA	1 cut(s)	687
SatI	GCNGC	5 cut(s)	84, 171, 298, 322, 336
Sau3AI	GATC	5 cut(s)	58, 283, 542, 582, 763
Sau96I	GGNCC	1 cut(s)	358
ScrFI	CCNGG	2 cut(s)	699, 700
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	1 cut(s)	221
SfcI	CTRYAG	1 cut(s)	267
SmaI	CCCGGG	1 cut(s)	700
SphI	GCATGC	1 cut(s)	219
Sse9I	AATT	4 cut(s)	430, 513, 550, 620
SsiI	CCGC	3 cut(s)	51, 159, 335
StyD4I	CCNGG	2 cut(s)	697, 698
StyI	CCWWGG	5 cut(s)	78, 138, 292, 339, 496
TaaI	ACNGT	3 cut(s)	578, 661, 761
TaiI	ACGT	2 cut(s)	379, 445
TaqI	TCGA	1 cut(s)	568
TasI	AATT	4 cut(s)	430, 513, 550, 620
TatI	WGTACW	2 cut(s)	251, 417
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	1 cut(s)	687
Tru9I	TTAA	1 cut(s)	687
TscAI	CASTG	2 cut(s)	736, 764
TseFI	GTSAC	2 cut(s)	634, 731
TseI	GCWGC	4 cut(s)	83, 170, 297, 321
Tsp45I	GTSAC	2 cut(s)	634, 731
TspDTI	ATGAA	1 cut(s)	102
TspGWI	ACGGA	1 cut(s)	320
TspMI	CCCGGG	1 cut(s)	698
TspRI	CASTG	2 cut(s)	736, 764
XapI	RAATTY	1 cut(s)	430
XceI	RCATGY	1 cut(s)	219
XmaI	CCCGGG	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.