Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0013081

Physical Location & Seq

Genomic Coordinates Forward (+)

40983163 .. 40984851

Gene Structure 1689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G020590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGTTTTCTCTTCCTTTTCATATTACTACACTTCGTGGATTCTGATGATCAGCAAAATCAAAATGGCTTTGTTTCTTTGCACATTCTTCTTCTTTCTCGCCTCCTCTGCTACTGCCTGTGATCGCTGTGTGCATCAAACCAAGACAGCTTACTTCTCCAAAGCCGCTGCACTCTCTTCTGGGGCTTGTGGGTATGGTTCTTTAGCTTTGGGACTTAGTGGTGGACACCTTGCTGCTGCTGTGCCTTCAATTTATAAAGATGGAGCTGGTTGTGGTTCATGTTTTCAGATAAGATGTAAGAATGCAACACTCTGTACAAAACAAGGGACTAGAGTGATCACAAGTGATCTCAATCACAATAACCAAACAGATTTTGTTCTAAGCAGCAGAGCTTTCATGGCCATGGCTCAAAAGGGTTTGGGCCAGGACATTTTGAAACATGGAATTGTGGATGTGGAGTATAAAAGGGTACCATGTGAATACAAGAACCAAAACTTAGCCTTACGTGTGGAAGAATCAAGCAAGAAGCCGCATTACTTAGCAGTTAAAGTTCTATACCAAGGTGGTCAGACAGAGATAGTAGCCATTGATGTTGCTCAGGTTGGTTCTTCTAACTGGAGTTTCCTGACTCGAAATTACGGGGCAGTATGGGACACCAGTAGGGTTCCGACTGGAGCGCTGCAATTCCGGTTCGTGGTGACTGGCGGGTTCGATGGAAAGATGGTTTGGGCAAAGAATGTGCTTCCTTCTGACTGGAAGCCTGGGATGGTATATGACACAAAGGTTCAAATCAGTGATATTGCACAGGAAGGTTGCTCTCCGTGTGACGATGGGATTTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

281

Amino Acids

30.77

Weight (kDa)

8.89

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	79 - 154	1.2e-10	Lytic transglycolase
Expansin_C	PF01357	168 - 249	8e-20	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45970 AT3G45970 AT4G38400
fragaria_vesca	FvH4_2g16110
malus_domestica	MD05G1130300.v1.1 MD10G1133200.v1.1
prunus_persica	Prupe.8G174500_v2.0.a1
pyrus_communis	pycom05g12690 pycom10g11500
rosa_chinensis	RchiOBHm_Chr6g0279781
rosa_laevigata	RLG00000013120
rosa_multiflora	Rmu_sc0001719.1_g000021
rosa_roxburghii	Rroxscaffold_7G00188660
rosa_rugosa	Rorug06G0128000
rosa_samantha	Rh6AG236200 Rh6BG240400 Rh6DG234100
rosa_wichuraiana	Rw6G020590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	255
Acc65I	GGTACC	1 cut(s)	469
AccB1I	GGYRCC	1 cut(s)	469
AciI	CCGC	3 cut(s)	165, 530, 705
AcoI	YGGCCR	1 cut(s)	399
AdeI	CACNNNGTG	1 cut(s)	36
AfaI	GTAC	2 cut(s)	316, 471
AfeI	AGCGCT	1 cut(s)	678
AfiI	CCNNNNNNNGG	1 cut(s)	694
AflIII	ACRYGT	1 cut(s)	505
AgsI	TTSAA	3 cut(s)	249, 436, 788
AjnI	CCWGG	2 cut(s)	423, 760
AjuI	GAANNNNNNNTTGG	2 cut(s)	709, 741
AluBI	AGCT	4 cut(s)	149, 206, 266, 392
AluI	AGCT	4 cut(s)	149, 206, 266, 392
Aor51HI	AGCGCT	1 cut(s)	678
AoxI	GGCC	2 cut(s)	399, 421
ApeKI	GCWGC	5 cut(s)	167, 233, 236, 384, 679
Asp718I	GGTACC	1 cut(s)	469
AspLEI	GCGC	1 cut(s)	679
AspS9I	GGNCC	1 cut(s)	421
AsuHPI	GGTGA	1 cut(s)	709
BalI	TGGCCA	1 cut(s)	401
BanI	GGYRCC	1 cut(s)	469
BarI	GAAGNNNNNNTAC	2 cut(s)	518, 550
BbvI	GCAGC	5 cut(s)	154, 220, 223, 396, 666
BccI	CCATC	5 cut(s)	254, 707, 715, 760, 824
BciT130I	CCWGG	2 cut(s)	425, 762
BclI	TGATCA	2 cut(s)	48, 336
BfaI	CTAG	1 cut(s)	330
BfoI	RGCGCY	1 cut(s)	680
BisI	GCNGC	7 cut(s)	165, 168, 234, 237, 385, 530, 680
BlsI	GCNGC	7 cut(s)	166, 169, 235, 238, 386, 531, 681
Bme1390I	CCNGG	2 cut(s)	425, 762
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	2 cut(s)	471, 666
BmrFI	CCNGG	2 cut(s)	425, 762
BmsI	GCATC	1 cut(s)	142
BpmI	CTGGAG	2 cut(s)	637, 693
Bpu10I	CCTNAGC	1 cut(s)	597
BsaAI	YACGTR	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	351
BsaJI	CCNNGG	3 cut(s)	402, 559, 761
BsaWI	WCCGGW	1 cut(s)	687
Bsc4I	CCNNNNNNNGG	1 cut(s)	694
Bse1I	ACTGG	5 cut(s)	620, 657, 676, 706, 758
Bse8I	GATNNNNATC	1 cut(s)	351
BseBI	CCWGG	2 cut(s)	425, 762
BseDI	CCNNGG	3 cut(s)	402, 559, 761
BseGI	GGATG	2 cut(s)	457, 771
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	1 cut(s)	694
BseMII	CTCAG	1 cut(s)	611
BseNI	ACTGG	5 cut(s)	620, 657, 676, 706, 758
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	5 cut(s)	154, 220, 223, 396, 666
BsgI	GTGCAG	1 cut(s)	153
BshFI	GGCC	2 cut(s)	401, 423
BshNI	GGYRCC	1 cut(s)	469
BsiSI	CCGG	1 cut(s)	688
BslFI	GGGAC	3 cut(s)	225, 340, 665
BslI	CCNNNNNNNGG	1 cut(s)	694
BsmFI	GGGAC	3 cut(s)	225, 340, 665
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	401, 423
Bsp1407I	TGTACA	1 cut(s)	314
Bsp143I	GATC	4 cut(s)	48, 121, 336, 346
Bsp19I	CCATGG	1 cut(s)	402
BspACI	CCGC	3 cut(s)	165, 530, 705
BspANI	GGCC	2 cut(s)	401, 423
BspCNI	CTCAG	1 cut(s)	610
BspLI	GGNNCC	2 cut(s)	471, 666
BspT107I	GGYRCC	1 cut(s)	469
BsrGI	TGTACA	1 cut(s)	314
BsrI	ACTGG	5 cut(s)	620, 657, 676, 706, 758
BssECI	CCNNGG	3 cut(s)	402, 559, 761
BssMI	GATC	4 cut(s)	48, 121, 336, 346
BssT1I	CCWWGG	2 cut(s)	402, 559
Bst2UI	CCWGG	2 cut(s)	425, 762
Bst6I	CTCTTC	2 cut(s)	16, 181
BstAUI	TGTACA	1 cut(s)	314
BstBAI	YACGTR	1 cut(s)	506
BstDEI	CTNAG	5 cut(s)	215, 380, 496, 538, 597
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	2 cut(s)	457, 771
BstH2I	RGCGCY	1 cut(s)	680
BstHHI	GCGC	1 cut(s)	679
BstKTI	GATC	4 cut(s)	51, 124, 339, 349
BstMBI	GATC	4 cut(s)	48, 121, 336, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 398
BstNI	CCWGG	2 cut(s)	425, 762
BstSCI	CCNGG	2 cut(s)	423, 760
BstV1I	GCAGC	5 cut(s)	154, 220, 223, 396, 666
BsuRI	GGCC	2 cut(s)	401, 423
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	2 cut(s)	457, 771
BtsIMutI	CAGTG	1 cut(s)	799
CfoI	GCGC	1 cut(s)	679
Cfr13I	GGNCC	1 cut(s)	421
Csp6I	GTAC	2 cut(s)	315, 470
CviAII	CATG	5 cut(s)	279, 397, 403, 440, 474
CviQI	GTAC	2 cut(s)	315, 470
DdeI	CTNAG	5 cut(s)	215, 380, 496, 538, 597
DpnI	GATC	4 cut(s)	50, 123, 338, 348
DpnII	GATC	4 cut(s)	48, 121, 336, 346
DraIII	CACNNNGTG	1 cut(s)	36
EaeI	YGGCCR	1 cut(s)	399
Eam1104I	CTCTTC	2 cut(s)	16, 181
EarI	CTCTTC	2 cut(s)	16, 181
Eco130I	CCWWGG	2 cut(s)	402, 559
Eco47III	AGCGCT	1 cut(s)	678
EcoRII	CCWGG	2 cut(s)	423, 760
EcoT14I	CCWWGG	2 cut(s)	402, 559
ErhI	CCWWGG	2 cut(s)	402, 559
FaeI	CATG	5 cut(s)	282, 400, 406, 443, 477
FaqI	GGGAC	3 cut(s)	225, 340, 665
FatI	CATG	5 cut(s)	278, 396, 402, 439, 473
FauI	CCCGC	1 cut(s)	698
FbaI	TGATCA	2 cut(s)	48, 336
Fnu4HI	GCNGC	7 cut(s)	165, 168, 234, 237, 385, 530, 680
FokI	GGATG	2 cut(s)	464, 778
Fsp4HI	GCNGC	7 cut(s)	165, 168, 234, 237, 385, 530, 680
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	1 cut(s)	678
GluI	GCNGC	7 cut(s)	165, 168, 234, 237, 385, 530, 680
GsuI	CTGGAG	2 cut(s)	637, 693
HaeII	RGCGCY	1 cut(s)	680
HaeIII	GGCC	2 cut(s)	401, 423
HapII	CCGG	1 cut(s)	688
HhaI	GCGC	1 cut(s)	679
Hin1II	CATG	5 cut(s)	282, 400, 406, 443, 477
Hin6I	GCGC	1 cut(s)	677
HinP1I	GCGC	1 cut(s)	677
HinfI	GANTC	3 cut(s)	40, 515, 628
HpaII	CCGG	1 cut(s)	688
HphI	GGTGA	1 cut(s)	709
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	5 cut(s)	45, 288, 570, 669, 751
Hpy188III	TCNNGA	1 cut(s)	625
Hpy8I	GTNNAC	1 cut(s)	224
HpyAV	CCTTC	3 cut(s)	255, 756, 803
HpyCH4IV	ACGT	1 cut(s)	505
HpyCH4V	TGCA	6 cut(s)	81, 133, 170, 305, 682, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 398
HpyF3I	CTNAG	5 cut(s)	215, 380, 496, 538, 597
HpySE526I	ACGT	1 cut(s)	505
Hsp92II	CATG	5 cut(s)	282, 400, 406, 443, 477
HspAI	GCGC	1 cut(s)	677
KpnI	GGTACC	1 cut(s)	473
Ksp22I	TGATCA	2 cut(s)	48, 336
Kzo9I	GATC	4 cut(s)	48, 121, 336, 346
LmnI	GCTCC	2 cut(s)	263, 674
Lsp1109I	GCAGC	5 cut(s)	154, 220, 223, 396, 666
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	1 cut(s)	505
MaeIII	GTNAC	2 cut(s)	697, 824
MalI	GATC	4 cut(s)	50, 123, 338, 348
MboI	GATC	4 cut(s)	48, 121, 336, 346
MboII	GAAGA	6 cut(s)	3, 79, 82, 168, 524, 600
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	4 cut(s)	249, 444, 634, 683
MluNI	TGGCCA	1 cut(s)	401
MlyI	GAGTC	1 cut(s)	622
MmeI	TCCRAC	1 cut(s)	692
MnlI	CCTC	2 cut(s)	112, 115
Mox20I	TGGCCA	1 cut(s)	401
MscI	TGGCCA	1 cut(s)	401
MseI	TTAA	1 cut(s)	546
MslI	CAYNNNNRTG	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	401
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	1 cut(s)	688
MspR9I	CCNGG	2 cut(s)	425, 762
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	2 cut(s)	425, 762
MwoI	GCNNNNNNNGC	2 cut(s)	107, 398
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	4 cut(s)	48, 121, 336, 346
NlaIII	CATG	5 cut(s)	282, 400, 406, 443, 477
NlaIV	GGNNCC	2 cut(s)	471, 666
NmuCI	GTSAC	2 cut(s)	697, 824
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	2 cut(s)	40, 515
PkrI	GCNGC	7 cut(s)	166, 169, 235, 238, 386, 531, 681
PleI	GAGTC	1 cut(s)	622
PpsI	GAGTC	1 cut(s)	622
Ppu21I	YACGTR	1 cut(s)	506
PsiI	TTATAA	1 cut(s)	255
Psp6I	CCWGG	2 cut(s)	423, 760
PspGI	CCWGG	2 cut(s)	423, 760
PspN4I	GGNNCC	2 cut(s)	471, 666
PspPI	GGNCC	1 cut(s)	421
RsaI	GTAC	2 cut(s)	316, 471
RsaNI	GTAC	2 cut(s)	315, 470
RseI	CAYNNNNRTG	1 cut(s)	401
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	7 cut(s)	165, 168, 234, 237, 385, 530, 680
Sau3AI	GATC	4 cut(s)	48, 121, 336, 346
Sau96I	GGNCC	1 cut(s)	421
SchI	GAGTC	1 cut(s)	622
ScrFI	CCNGG	2 cut(s)	425, 762
SfaNI	GCATC	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	401
Sse9I	AATT	4 cut(s)	249, 444, 634, 683
SsiI	CCGC	3 cut(s)	165, 530, 705
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	2 cut(s)	423, 760
StyI	CCWWGG	2 cut(s)	402, 559
TaiI	ACGT	1 cut(s)	508
TaqI	TCGA	2 cut(s)	631, 711
TasI	AATT	4 cut(s)	249, 444, 634, 683
TatI	WGTACW	1 cut(s)	314
TauI	GCSGC	2 cut(s)	167, 532
TfiI	GAWTC	2 cut(s)	40, 515
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TscAI	CASTG	1 cut(s)	799
TseFI	GTSAC	2 cut(s)	697, 824
TseI	GCWGC	5 cut(s)	167, 233, 236, 384, 679
Tsp45I	GTSAC	2 cut(s)	697, 824
TspDTI	ATGAA	3 cut(s)	9, 267, 385
TspGWI	ACGGA	1 cut(s)	810
TspRI	CASTG	1 cut(s)	799
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.